Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G2280 Fragaria x ananassa HOM05D007418 ORTHO05D009419 3.0e-137 491.9 252 100.0
FAN11G0209 Fragaria x ananassa HOM05D007418 ORTHO05D009419 2.6e-133 478.8 252 97.6
FvH4_3g45540 Fragaria vesca HOM05D007418 ORTHO05D009419 2.3e-126 455.7 252 94.4
FAN25G3222 Fragaria x ananassa HOM05D007418 ORTHO05D009419 6.6e-121 437.6 281 85.4
RcHm_v2.0_Chr5g0083721 Rosa chinensis HOM05D007418 ORTHO05D009419 1.0e-113 413.7 260 84.2
Prupe.6G003800 Prunus persica HOM05D007418 ORTHO05D009419 2.2e-92 342.8 260 70.4
MD11G1003800 Malus domestica HOM05D007418 ORTHO05D009419 4.1e-78 295.4 253 61.3
CANSAT11G2630 Cannabis sativa HOM05D007418 ORTHO05D009419 3.4e-77 292.4 247 61.9
ClCG03G014480 Citrullus lanatus HOM05D007418 ORTHO05D009419 2.0e-72 276.6 251 59.4
MELO3C029305.2 Cucumis melo HOM05D007418 ORTHO05D009419 6.3e-71 271.6 252 57.1
CsaV3_1G041690 Cucumis sativus L. HOM05D007418 ORTHO05D009419 1.0e-68 264.2 252 55.6
QL01p009000 Quercus lobata HOM05D007418 ORTHO05D009419 5.7e-64 248.4 261 52.1
Ca_16377_v3 Cicer arietinum L. HOM05D007418 ORTHO05D009419 1.7e-63 246.9 239 52.3
Phvul.001G269400 Phaseolus vulgaris HOM05D007418 ORTHO05D009419 1.5e-61 240.4 208 53.8
Lj6g0008878 Lotus japonicus HOM05D007418 ORTHO05D009419 3.5e-61 239.2 230 53.0
Glyma.04G122600 Glycine max HOM05D007418 ORTHO05D009419 1.0e-60 237.7 235 53.2
TPR.G19319 Trifolium pratense HOM05D007418 ORTHO05D009419 5.5e-59 231.9 229 52.0
arahy.Tifrunner.gnm1.ann1.ZH41ZF Arachis hypogaea HOM05D007418 ORTHO05D009419 2.1e-58 229.9 226 51.3
Psat5g101120 Pisum sativum HOM05D007418 ORTHO05D009419 4.7e-58 228.8 242 50.0
Cfa019012 Carpinus fangiana HOM05D000059 ORTHO05D000528 6.1e-58 228.4 256 48.4
FAN16G1782 Fragaria x ananassa HOM05D007418 ORTHO05D009419 6.1e-58 228.4 124 96.0
Medtr3g083530 Medicago truncatula HOM05D007418 ORTHO05D009419 8.0e-58 228.0 210 51.0
Sed0010168 Sechium edule HOM05D007418 ORTHO05D009419 3.9e-57 225.7 197 60.4
Lalb_Chr11g0075981 Lupinus albus HOM05D007418 ORTHO05D009419 7.4e-56 221.5 193 56.0
VMungo0464G0510 Vigna mungo HOM05D007418 ORTHO05D009419 9.7e-56 221.1 241 47.7
arahy.Tifrunner.gnm1.ann1.WR82LC Arachis hypogaea HOM05D007418 ORTHO05D009419 1.8e-54 216.9 258 45.3
PGR119G2313 Punica granatum HOM05D007418 ORTHO05D009419 7.0e-54 214.9 259 46.3
CiPaw.13G176700 Carya illinoinensis HOM05D007418 ORTHO05D009419 5.9e-53 211.8 214 51.9
COL.COLO4_22858 Corchorus olitorius HOM05D007418 ORTHO05D009419 1.0e-52 211.1 226 51.3
Duzib160G0534 Durio zibethinus HOM05D007418 ORTHO05D009419 3.8e-52 209.1 224 50.0
Nn7g35872 Nelumbo nucifera HOM05D007418 ORTHO05D009419 3.8e-52 209.1 244 46.3
Thecc.06G017000 Theobroma cacao HOM05D007418 ORTHO05D009419 6.5e-52 208.4 227 49.3
GSVIVG01025464001 Vitis vinifera HOM05D007418 ORTHO05D009419 6.5e-52 208.4 253 45.8
Dinv13469 Davidia involucrata HOM05D007418 ORTHO05D009419 1.5e-51 207.2 259 46.7
Actinidia16244 Actinidia chinensis HOM05D007418 ORTHO05D009419 1.9e-51 206.8 247 48.2
Gohir.A05G110100 Gossypium hirsutum HOM05D007418 ORTHO05D009419 2.5e-51 206.5 225 48.9
Gorai.009G114600 Gossypium raimondii HOM05D007418 ORTHO05D009419 5.5e-51 205.3 225 48.4
Zm00001eb061520 Zea mays HOM05D007418 ORTHO05D009419 7.2e-51 204.9 205 50.2
Eucgr.J01769 Eucalyptus grandis HOM05D007418 ORTHO05D009419 2.1e-50 203.4 215 46.5
HanXRQChr01g0021361 Helianthus annuus HOM05D007418 ORTHO05D009419 2.7e-50 203.0 197 49.7
PSO339G6348 Papaver somniferum HOM05D007418 ORTHO05D009419 5.2e-49 198.7 197 48.7
Gohir.D05G110400 Gossypium hirsutum HOM05D007418 ORTHO05D009419 1.5e-48 197.2 224 46.9
Solyc01g044490.4 Solanum lycopersicum HOM05D007418 ORTHO05D009419 1.5e-48 197.2 237 45.1
AL7G26640 Arabidopsis lyrata HOM05D007418 ORTHO05D009419 3.4e-48 196.1 221 45.7
Sopen01g018620 Solanum pennellii HOM05D007418 ORTHO05D009419 3.4e-48 196.1 237 45.1
PSO384G4713 Papaver somniferum HOM05D007418 ORTHO05D009419 5.7e-48 195.3 226 45.6
Carub.0007s1463 Capsella rubella HOM05D007418 ORTHO05D009419 9.7e-48 194.5 201 47.3
CARHR233880 Cardamine hirsuta HOM05D007418 ORTHO05D009419 9.7e-48 194.5 201 47.3
ECA248G1985 Erigeron canadensis HOM05D007418 ORTHO05D009419 9.7e-48 194.5 256 41.4
AUR62019167 Chenopodium quinoa HOM05D007418 ORTHO05D009419 3.7e-47 192.6 196 46.9
Migut.D02561 Erythranthe guttata HOM05D007418 ORTHO05D009419 4.8e-47 192.2 206 48.5
AT4G26310 Arabidopsis thaliana HOM05D007418 ORTHO05D009419 1.1e-46 191.0 228 44.7
Manes.05G202800 Manihot esculenta HOM05D007418 ORTHO05D009419 1.4e-46 190.7 235 45.1
ATR0737G157 Amborella trichopoda HOM05D007418 ORTHO05D009419 1.8e-46 190.3 194 49.0
TWI60G0114 Tripterygium wilfordii HOM05D007418 ORTHO05D009419 1.8e-46 190.3 238 46.2
Haze_07392 Corylus avellana HOM05D007418 ORTHO05D009419 3.1e-46 189.5 387 33.9
BolC5t33821H Brassica oleracea HOM05D007418 ORTHO05D009419 5.3e-46 188.7 194 47.4
CAN.G752.2 Capsicum annuum HOM05D007418 ORTHO05D009419 5.3e-46 188.7 239 43.5
Thhalv10021419m.g Eutrema salsugineum HOM05D007418 ORTHO05D009419 1.2e-45 187.6 242 43.4
Aa31LG11G8030 Aethionema arabicum HOM05D007418 ORTHO05D009419 1.6e-45 187.2 192 47.4
Aqoxy1G00469 Aquilegia oxysepala HOM05D002514 ORTHO05D002761 2.0e-45 186.8 197 45.7
BcaC05g28944 Brassica carinata HOM05D007418 ORTHO05D006651 2.0e-45 186.8 193 47.2
C05p50730 Brassica napus HOM05D007418 ORTHO05D006651 2.0e-45 186.8 193 47.2
TAR369G1115 Trochodendron aralioides HOM05D007418 ORTHO05D009419 2.0e-45 186.8 251 42.6
BraA05t22194Z Brassica rapa HOM05D007418 ORTHO05D009419 5.9e-45 185.3 236 43.6
SalBow2G0815 Salvia bowleyana HOM05D007418 ORTHO05D009419 7.7e-45 184.9 239 46.4
MSTRG.20939 Avicennia marina HOM05D007418 ORTHO05D009419 2.2e-44 183.3 248 41.5
THA.LOC104817736 Tarenaya hassleriana HOM05D007418 ORTHO05D009419 2.2e-44 183.3 196 45.9
Sp3g14020 Schrenkiella parvula HOM05D007418 ORTHO05D009419 2.9e-44 183.0 236 42.8
Ciclev10016443m.g Citrus clementina HOM05D007418 ORTHO05D009419 5.0e-44 182.2 246 44.7
Potri.001G004300 Populus trichocarpa HOM05D007418 ORTHO05D009419 2.5e-43 179.9 246 44.7
Oeu023704.1 Olea europaea HOM05D007418 ORTHO05D009419 5.5e-43 178.7 167 51.5
AUR62040906 Chenopodium quinoa HOM05D007418 ORTHO05D009419 1.6e-42 177.2 166 49.4
CAN.G782.23 Capsicum annuum HOM05D007418 ORTHO05D009419 2.1e-42 176.8 220 41.8
A05p33720 Brassica napus HOM05D007418 ORTHO05D006651 4.7e-42 175.6 242 42.1
Pp3c1_29390 Physcomitrium patens HOM05D007418 ORTHO05D009419 1.5e-40 170.6 190 45.8
MBI04_g37007_MAGBIO Magnolia biondii HOM05D007418 ORTHO05D009419 4.4e-40 169.1 250 40.0
Peaxi162Scf00005g00613 Petunia axillaris HOM05D007418 ORTHO05D009419 5.7e-40 168.7 178 46.1
Cc01_g03260 Coffea canephora HOM05D007418 ORTHO05D009419 1.3e-39 167.5 168 45.8
Lsat_1_v5_gn_1_67260 Lactuca sativa HOM05D007418 ORTHO05D009419 1.3e-39 167.5 245 39.6
Mapoly0009s0101 Marchantia polymorpha HOM05D007418 ORTHO05D009419 2.8e-39 166.4 197 44.2
Cc01_g00020 Coffea canephora HOM05D007418 ORTHO05D009419 6.3e-39 165.2 166 45.8
DCAR_025361 Daucus carota HOM05D007418 ORTHO05D009419 2.4e-38 163.3 160 48.8
SMO172G0180 Selaginella moellendorffii HOM05D007418 ORTHO05D009419 2.7e-37 159.8 195 41.0
Sabra01G0003000 Salix brachista HOM05D007418 ORTHO05D009419 4.5e-37 159.1 244 42.2
Atru.chr3.2092 Acer truncatum HOM05D007418 ORTHO05D009419 1.7e-36 157.1 224 44.2
AagrBONN_evm.TU.Sc2ySwM_344.2531 Anthoceros agrestis HOM05D007418 ORTHO05D009419 1.7e-36 157.1 166 46.4
MD03G1004200 Malus domestica HOM05D007418 ORTHO05D009419 8.0e-34 148.3 242 39.3
HPP92_000821 Vanilla planifolia HOM05D007418 ORTHO05D009419 1.4e-33 147.5 169 45.0
unitig_899.g15026 Utricularia gibba HOM05D007418 ORTHO05D009419 4.0e-33 146.0 195 39.5
CBR_g28818 Chara braunii HOM05D007418 ORTHO05D009419 1.7e-31 140.6 198 38.9
CAN.G132.16 Capsicum annuum HOM05D007418 ORTHO05D009419 2.2e-31 140.2 207 37.7
vmacro04241 Vaccinium macrocarpon HOM05D007418 ORTHO05D009419 3.7e-31 139.4 324 32.4
Hma1.2p1_0062F.1_g034220 Hydrangea macrophylla HOM05D007418 ORTHO05D009419 4.9e-31 139.0 135 47.4
SGA_v2.0_scaffold6G03369 Striga asiatica HOM05D007418 ORTHO05D009419 2.0e-29 133.7 204 40.2
QL04p006930 Quercus lobata HOM05D007418 ORTHO05D009419 4.3e-27 125.9 93 61.3
Nitab4.5_0004630g0080 Nicotiana tabacum HOM05D007418 ORTHO05D009419 2.3e-25 120.2 175 42.3
Nitab4.5_0002351g0010 Nicotiana tabacum HOM05D007418 ORTHO05D009419 1.9e-22 110.5 177 41.2
Sc06g0004180 Simmondsia chinensis HOM05D007418 ORTHO05D009419 1.9e-22 110.5 121 45.5
MCO01G577 Micromonas commoda HOM05D005727 ORTHO05D009419 3.3e-19 99.8 188 33.0
Rhsim13G0232600 Rhododendron simsii HOM05D007418 ORTHO05D009419 6.8e-17 92.0 76 56.6
Ah.15g090030 Amaranthus hybridus HOM05D005727 ORTHO05D007324 8.3e-15 85.1 197 26.9
CiPaw.09G221300 Carya illinoinensis HOM05D005727 ORTHO05D007324 1.9e-14 84.0 170 29.4
Sed0002775 Sechium edule HOM05D005727 ORTHO05D007324 3.2e-14 83.2 168 29.8
Nn2g10300 Nelumbo nucifera HOM05D005727 ORTHO05D007324 4.1e-14 82.8 168 28.6
ATR1127G235 Amborella trichopoda HOM05D005727 ORTHO05D007324 5.4e-14 82.4 168 29.2
Cre06.g263050 Chlamydomonas reinhardtii HOM05D007418 ORTHO05D009419 7.1e-14 82.0 202 28.7
Mapoly0080s0087 Marchantia polymorpha HOM05D005727 ORTHO05D007324 1.2e-13 81.3 169 28.4
Manes.08G171300 Manihot esculenta HOM05D005727 ORTHO05D007324 2.1e-13 80.5 170 29.4
EL10Ac7g17100 Beta vulgaris HOM05D005727 ORTHO05D007324 2.7e-13 80.1 238 26.1
Nitab4.5_0004630g0090 Nicotiana tabacum HOM05D007418 ORTHO05D009419 2.7e-13 80.1 82 42.7
MELO3C009104.2 Cucumis melo HOM05D005727 ORTHO05D007324 6.0e-13 79.0 240 28.8
SalBow8G0913 Salvia bowleyana HOM05D005727 ORTHO05D007324 7.8e-13 78.6 182 26.9
Haze_21174 Corylus avellana HOM05D005727 ORTHO05D007324 1.7e-12 77.4 241 24.9
CsaV3_3G033100 Cucumis sativus L. HOM05D005727 ORTHO05D007324 1.7e-12 77.4 239 27.2
SalBow1G7101 Salvia bowleyana HOM05D005727 ORTHO05D007324 3.9e-12 76.3 161 28.0
Cfa017035 Carpinus fangiana HOM05D005727 ORTHO05D007324 6.6e-12 75.5 241 24.9
Pp3c23_18430 Physcomitrium patens HOM05D005727 ORTHO05D007324 6.6e-12 75.5 243 25.1
SalBow1G5580 Salvia bowleyana HOM05D005727 ORTHO05D007324 1.1e-11 74.7 161 27.3
SalBow5G2514 Salvia bowleyana HOM05D005727 ORTHO05D007324 1.1e-11 74.7 161 28.0
DCAR_023975 Daucus carota HOM05D005727 ORTHO05D007324 1.5e-11 74.3 216 25.9
MCO07G614 Micromonas commoda HOM05D005727 ORTHO05D007324 3.3e-11 73.2 182 26.4
Peaxi162Scf01238g00221 Petunia axillaris HOM05D005727 ORTHO05D007324 3.3e-11 73.2 220 26.4
Nitab4.5_0010794g0010 Nicotiana tabacum HOM05D005727 ORTHO05D007324 7.3e-11 72.0 236 28.0
ClCG10G022720 Citrullus lanatus HOM05D005727 ORTHO05D007324 3.1e-09 66.6 103 35.9
SHI31291 Sapria himalayana HOM05D007418 ORTHO05D009419 3.1e-09 66.6 82 42.7
FAN16G3177 Fragaria x ananassa HOM05D001582 ORTHO05D001598 2.4e-06 57.0 89 40.4
Duzib268G0979 Durio zibethinus HOM05D005727 ORTHO05D007324 7.1e-06 55.5 133 25.6


User provided reference genes

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