Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G2251 Fragaria x ananassa HOM05D006712 ORTHO05D008219 5.0e-34 147.1 71 100.0
FAN11G0164 Fragaria x ananassa HOM05D006712 ORTHO05D008219 9.8e-30 132.9 65 100.0
FAN16G2749 Fragaria x ananassa HOM05D006712 ORTHO05D008219 9.8e-30 132.9 65 100.0
FvH4_3g26410 Fragaria vesca HOM05D006712 ORTHO05D008219 1.3e-29 132.5 64 100.0
RcHm_v2.0_Chr5g0048501 Rosa chinensis HOM05D006712 ORTHO05D008219 8.3e-29 129.8 65 96.9
MD14G1087800 Malus domestica HOM05D006712 ORTHO05D008219 1.5e-25 119.0 64 89.1
Prupe.7G038700 Prunus persica HOM05D006712 ORTHO05D008219 9.5e-25 116.3 64 87.5
HanXRQChr04g0096771 Helianthus annuus HOM05D006712 ORTHO05D008219 1.5e-22 109.0 61 82.0
Potri.001G216500 Populus trichocarpa HOM05D006712 ORTHO05D008219 2.6e-22 108.2 63 84.1
VMungo1127G0962 Vigna mungo HOM05D006712 ORTHO05D008219 5.8e-22 107.1 63 79.4
Duzib168G2384 Durio zibethinus HOM05D006712 ORTHO05D008219 7.5e-22 106.7 63 79.4
Rhsim13G0196500 Rhododendron simsii HOM05D006712 ORTHO05D008219 1.3e-21 105.9 63 76.2
Atru.chr3.3110 Acer truncatum HOM05D006712 ORTHO05D008219 1.7e-21 105.5 64 79.7
Lsat_1_v5_gn_2_34521 Lactuca sativa HOM05D006712 ORTHO05D008219 1.7e-21 105.5 62 80.6
ClCG03G012180 Citrullus lanatus HOM05D006712 ORTHO05D008219 2.2e-21 105.1 66 75.8
Sabra16G0127300 Salix brachista HOM05D006712 ORTHO05D008219 2.2e-21 105.1 68 77.9
QL01p019587 Quercus lobata HOM05D006712 ORTHO05D008219 2.9e-21 104.8 63 77.8
Thecc.09G272000 Theobroma cacao HOM05D006712 ORTHO05D008219 2.9e-21 104.8 63 79.4
THA.LOC104810933 Tarenaya hassleriana HOM05D006712 ORTHO05D008219 4.9e-21 104.0 65 75.4
BcaB01g04741 Brassica carinata HOM05D006712 ORTHO05D008219 8.3e-21 103.2 65 73.8
BcaC01g06601 Brassica carinata HOM05D006712 ORTHO05D008219 8.3e-21 103.2 65 73.8
A03p10600 Brassica napus HOM05D006712 ORTHO05D008219 8.3e-21 103.2 65 73.8
C03p12200 Brassica napus HOM05D006712 ORTHO05D008219 8.3e-21 103.2 65 73.8
BolC3t13693H Brassica oleracea HOM05D006712 ORTHO05D008219 8.3e-21 103.2 65 73.8
BraA03t10372Z Brassica rapa HOM05D006712 ORTHO05D008219 8.3e-21 103.2 65 73.8
Hma1.2p1_0101F.1_g049490 Hydrangea macrophylla HOM05D006712 ORTHO05D008219 1.1e-20 102.8 70 68.6
BcaC04g19541 Brassica carinata HOM05D002527 ORTHO05D002865 1.4e-20 102.4 65 72.3
BcaC04g19542 Brassica carinata HOM05D006712 ORTHO05D008219 1.4e-20 102.4 65 72.3
C09p54580 Brassica napus HOM05D006712 ORTHO05D008219 1.4e-20 102.4 65 72.3
BolC9t58325H Brassica oleracea HOM05D006712 ORTHO05D008219 1.4e-20 102.4 65 72.3
COL.COLO4_25432 Corchorus olitorius HOM05D006712 ORTHO05D008219 1.4e-20 102.4 63 81.0
Sed0013977 Sechium edule HOM05D006712 ORTHO05D008219 1.4e-20 102.4 66 72.7
CSS0013127 Camellia sinensis var. sinensis HOM05D006712 ORTHO05D008219 1.9e-20 102.1 63 74.6
Sp6g23080 Schrenkiella parvula HOM05D006712 ORTHO05D008219 1.9e-20 102.1 65 72.3
arahy.Tifrunner.gnm1.ann1.4CVW1F Arachis hypogaea HOM05D006712 ORTHO05D008219 2.4e-20 101.7 63 76.2
MELO3C015061.2 Cucumis melo HOM05D006712 ORTHO05D008219 3.2e-20 101.3 66 72.7
CsaV3_1G043820 Cucumis sativus L. HOM05D006712 ORTHO05D008219 3.2e-20 101.3 66 72.7
Aa31LG1G13310 Aethionema arabicum HOM05D006712 ORTHO05D008219 4.1e-20 100.9 65 70.8
Hma1.2p1_0101F.1_g049480 Hydrangea macrophylla HOM05D006712 ORTHO05D008219 4.1e-20 100.9 64 73.4
GSVIVG01037582001 Vitis vinifera HOM05D006712 ORTHO05D008219 4.1e-20 100.9 64 73.4
AL6G33100 Arabidopsis lyrata HOM05D006712 ORTHO05D008219 5.4e-20 100.5 65 70.8
Carub.0006s1976 Capsella rubella HOM05D006712 ORTHO05D008219 5.4e-20 100.5 65 70.8
CiPaw.13G129200 Carya illinoinensis HOM05D006712 ORTHO05D008219 5.4e-20 100.5 63 71.4
Manes.11G101400 Manihot esculenta HOM05D006712 ORTHO05D008219 5.4e-20 100.5 64 73.4
CARHR191410 Cardamine hirsuta HOM05D006712 ORTHO05D008219 7.0e-20 100.1 65 69.2
Lj3g0027754 Lotus japonicus HOM05D006712 ORTHO05D008219 7.0e-20 100.1 63 76.2
TAR623G0680 Trochodendron aralioides HOM05D006712 ORTHO05D008219 7.0e-20 100.1 64 73.4
EL10Ac7g16293 Beta vulgaris HOM05D006712 ORTHO05D008219 1.2e-19 99.4 64 76.6
Ciclev10028702m.g Citrus clementina HOM05D006712 ORTHO05D008219 1.2e-19 99.4 64 76.6
Glyma.11G178255 Glycine max HOM05D006712 ORTHO05D008219 1.2e-19 99.4 63 74.6
Actinidia24254 Actinidia chinensis HOM05D006712 ORTHO05D008219 1.6e-19 99.0 63 71.4
TWI31G0890 Tripterygium wilfordii HOM05D006712 ORTHO05D008219 1.6e-19 99.0 63 74.6
GSVIVG01024643001 Vitis vinifera HOM05D006712 ORTHO05D008219 1.6e-19 99.0 64 73.4
Phvul.011G099200 Phaseolus vulgaris HOM05D006712 ORTHO05D008219 2.7e-19 98.2 63 74.6
Sopen06g030560 Solanum pennellii HOM05D006712 ORTHO05D008219 2.7e-19 98.2 65 72.3
unitig_27.g25124 Utricularia gibba HOM05D006712 ORTHO05D008219 2.7e-19 98.2 63 73.0
Cc01_g07690 Coffea canephora HOM05D006712 ORTHO05D008219 3.5e-19 97.8 64 71.9
Dinv18839 Davidia involucrata HOM05D006712 ORTHO05D008219 3.5e-19 97.8 63 71.4
Peaxi162Scf00098g00079 Petunia axillaris HOM05D006712 ORTHO05D008219 3.5e-19 97.8 63 71.4
Hund20948 Selenicereus undatus HOM05D006712 ORTHO05D008219 3.5e-19 97.8 64 71.9
Cfa010172 Carpinus fangiana HOM05D006712 ORTHO05D008219 6.0e-19 97.1 63 73.0
Glyma.12G094900 Glycine max HOM05D006712 ORTHO05D008219 6.0e-19 97.1 61 75.4
DCAR_014052 Daucus carota HOM05D006712 ORTHO05D008219 7.8e-19 96.7 63 71.4
Gohir.A09G099400 Gossypium hirsutum HOM05D006712 ORTHO05D008219 7.8e-19 96.7 63 76.2
CAN.G919.48 Capsicum annuum HOM05D006712 ORTHO05D008219 1.0e-18 96.3 64 68.8
MSTRG.17680 Avicennia marina HOM05D006712 ORTHO05D008219 1.3e-18 95.9 63 73.0
PGSC0003DMG400005929 Solanum tuberosum HOM05D006712 ORTHO05D008219 1.7e-18 95.5 64 68.8
AUR62020228 Chenopodium quinoa HOM05D006712 ORTHO05D008219 2.3e-18 95.1 64 71.9
Migut.N02451 Erythranthe guttata HOM05D006712 ORTHO05D008219 2.3e-18 95.1 64 65.6
Gohir.D09G098800 Gossypium hirsutum HOM05D006712 ORTHO05D008219 2.3e-18 95.1 63 74.6
Gorai.006G115800 Gossypium raimondii HOM05D006712 ORTHO05D008219 2.3e-18 95.1 63 74.6
Sc21g0006790 Simmondsia chinensis HOM05D006712 ORTHO05D008219 2.3e-18 95.1 64 70.3
Aqoxy1G00652 Aquilegia oxysepala HOM05D006712 ORTHO05D008219 3.0e-18 94.7 65 70.8
Nitab4.5_0000380g0060 Nicotiana tabacum HOM05D006712 ORTHO05D008219 5.1e-18 94.0 63 68.3
Nitab4.5_0008897g0020 Nicotiana tabacum HOM05D006712 ORTHO05D008219 5.1e-18 94.0 63 68.3
Os01g0965600 Oryza sativa ssp. japonica HOM05D006712 ORTHO05D008219 5.1e-18 94.0 65 72.3
AUR62001554 Chenopodium quinoa HOM05D006712 ORTHO05D008219 6.6e-18 93.6 64 70.3
AT5G22120 Arabidopsis thaliana HOM05D006712 ORTHO05D008219 8.6e-18 93.2 65 67.7
Lalb_Chr03g0028431 Lupinus albus HOM05D006712 ORTHO05D008219 8.6e-18 93.2 63 73.0
Ca_19473_v3 Cicer arietinum L. HOM05D006712 ORTHO05D008219 1.5e-17 92.4 64 71.9
Oeu009041.1 Olea europaea HOM05D006712 ORTHO05D008219 1.9e-17 92.0 63 68.3
Eucgr.B03815 Eucalyptus grandis HOM05D006712 ORTHO05D008219 2.5e-17 91.7 64 65.6
Lalb_Chr19g0136261 Lupinus albus HOM05D006712 ORTHO05D008219 4.3e-17 90.9 64 70.3
PSO384G4991 Papaver somniferum HOM05D006712 ORTHO05D008219 7.3e-17 90.1 63 68.3
SalBow3G4582 Salvia bowleyana HOM05D006712 ORTHO05D008219 7.3e-17 90.1 64 64.1
BcaB08g36451 Brassica carinata HOM05D002527 ORTHO05D008219 9.5e-17 89.7 63 66.7
MBI17_g02433_MAGBIO Magnolia biondii HOM05D006712 ORTHO05D008219 9.5e-17 89.7 64 67.2
PSO339G1919 Papaver somniferum HOM05D006712 ORTHO05D008219 1.2e-16 89.4 63 68.3
Zm00001eb282230 Zea mays HOM05D006712 ORTHO05D008219 1.2e-16 89.4 65 66.2
Lj1A268G10 Lonicera japonica HOM05D006712 ORTHO05D008219 8.1e-16 86.7 63 68.3
BraA10t43946Z Brassica rapa HOM05D006712 ORTHO05D008219 2.3e-15 85.1 63 65.1
Medtr4g051435 Medicago truncatula HOM05D000445 ORTHO05D000314 2.3e-15 85.1 65 64.6
Medtr4g051518 Medicago truncatula HOM05D006712 ORTHO05D008219 2.3e-15 85.1 65 64.6
CDE06G0581 Ceratophyllum demersum HOM05D006712 ORTHO05D008219 5.2e-15 84.0 64 62.5
CDE07G1644 Ceratophyllum demersum HOM05D006712 ORTHO05D008219 2.0e-14 82.0 63 63.5
SHI25255 Sapria himalayana HOM05D000265 ORTHO05D000161 4.4e-14 80.9 61 57.4
ECA238G0730 Erigeron canadensis HOM05D006712 ORTHO05D008219 5.8e-14 80.5 46 82.6
Nn6g34683 Nelumbo nucifera HOM05D006712 ORTHO05D008219 5.8e-14 80.5 63 66.7
TPR.G4637 Trifolium pratense HOM05D006712 ORTHO05D008219 5.8e-14 80.5 62 64.5
ATR0772G219 Amborella trichopoda HOM05D006712 ORTHO05D008219 1.7e-13 79.0 64 60.9
BcaC01g06603 Brassica carinata HOM05D006712 ORTHO05D008219 4.9e-13 77.4 72 58.3
arahy.Tifrunner.gnm1.ann1.UJS8TC Arachis hypogaea HOM05D006712 ORTHO05D008219 6.4e-13 77.0 56 67.9
vmacro03955 Vaccinium macrocarpon HOM05D006712 ORTHO05D008219 6.4e-13 77.0 49 69.4
Actinidia07277 Actinidia chinensis HOM05D006712 ORTHO05D008219 3.2e-12 74.7 62 61.3
Psat7g204400 Pisum sativum HOM05D006712 ORTHO05D008219 3.2e-12 74.7 65 56.9
HPP92_002650 Vanilla planifolia HOM05D006712 ORTHO05D008219 1.7e-10 68.9 61 57.4
SEGI_35195 Sequoiadendron giganteum HOM05D006712 ORTHO05D008219 3.9e-10 67.8 74 51.4
A10p18660 Brassica napus HOM05D002527 ORTHO05D002865 1.9e-09 65.5 40 75.0
Mapoly0027s0100 Marchantia polymorpha HOM05D006712 ORTHO05D008219 2.4e-07 58.5 70 42.9
BcaC04g19543 Brassica carinata HOM05D006712 ORTHO05D008219 6.8e-07 57.0 39 61.5
AagrBONN_evm.TU.Sc2ySwM_117.1746 Anthoceros agrestis HOM05D006712 ORTHO05D008219 1.5e-06 55.8 68 45.6


User provided reference genes

Program Settings