Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G2234 Fragaria x ananassa HOM05D007120 ORTHO05D008881 1.2e-32 142.5 69 100.0
FAN11G0923 Fragaria x ananassa HOM05D007120 ORTHO05D008881 7.3e-30 133.3 69 94.2
Prupe.6G040200 Prunus persica HOM05D007120 ORTHO05D008881 3.4e-19 97.8 59 76.3
MD03G1050700 Malus domestica HOM05D007120 ORTHO05D008881 6.6e-15 83.6 59 69.5
TAR369G0939 Trochodendron aralioides HOM05D007120 ORTHO05D008881 1.1e-14 82.8 63 68.3
Nn2g10275 Nelumbo nucifera HOM05D007120 ORTHO05D008881 5.6e-14 80.5 61 65.6
Aqoxy4G03269 Aquilegia oxysepala HOM05D007120 ORTHO05D008881 4.8e-13 77.4 63 60.3
CiPaw.14G049800 Carya illinoinensis HOM05D007120 ORTHO05D008881 1.1e-12 76.3 62 59.7
Cfa001199 Carpinus fangiana HOM05D007120 ORTHO05D008881 2.4e-12 75.1 61 60.7
Cfa011840 Carpinus fangiana HOM05D007120 ORTHO05D008881 4.0e-12 74.3 60 56.7
Haze_17366 Corylus avellana HOM05D006907 ORTHO05D008598 4.0e-12 74.3 61 60.7
Nn5g26831 Nelumbo nucifera HOM05D007120 ORTHO05D008881 1.2e-11 72.8 43 72.1
Lj1A968T57 Lonicera japonica HOM05D007120 ORTHO05D008881 2.0e-11 72.0 61 65.6
Gohir.D06G187000 Gossypium hirsutum HOM05D007120 ORTHO05D008881 3.4e-11 71.2 56 60.7
Gorai.010G219300 Gossypium raimondii HOM05D007120 ORTHO05D008881 3.4e-11 71.2 56 60.7
Hma1.2p1_0264F.1_g105975 Hydrangea macrophylla HOM05D007120 ORTHO05D008881 3.4e-11 71.2 55 61.8
Hma1.2p1_1805F.1_g303200 Hydrangea macrophylla HOM05D007120 ORTHO05D008881 3.4e-11 71.2 55 61.8
MD07G1234900 Malus domestica HOM05D007120 ORTHO05D008881 4.5e-11 70.9 43 69.8
Gohir.A06G180100 Gossypium hirsutum HOM05D007120 ORTHO05D008881 5.8e-11 70.5 55 61.8
Gohir.D13G008000 Gossypium hirsutum HOM05D007120 ORTHO05D008881 5.8e-11 70.5 57 57.9
MSTRG.27254 Avicennia marina HOM05D007120 ORTHO05D008881 7.6e-11 70.1 62 58.1
Gorai.013G008400 Gossypium raimondii HOM05D007120 ORTHO05D008881 9.9e-11 69.7 57 57.9
Prupe.2G265200 Prunus persica HOM05D007120 ORTHO05D008881 1.3e-10 69.3 43 67.4
Duzib128G0262 Durio zibethinus HOM05D007120 ORTHO05D008881 1.7e-10 68.9 59 57.6
Nitab4.5_0000171g0210 Nicotiana tabacum HOM05D007120 ORTHO05D008881 1.7e-10 68.9 62 53.2
Potri.019G059500 Populus trichocarpa HOM05D007120 ORTHO05D008881 1.7e-10 68.9 48 64.6
FAN03G2745 Fragaria x ananassa HOM05D007120 ORTHO05D008881 2.2e-10 68.6 59 55.9
Peaxi162Scf00073g02342 Petunia axillaris HOM05D007120 ORTHO05D008881 2.2e-10 68.6 62 54.8
CSS0015321 Camellia sinensis var. sinensis HOM05D007120 ORTHO05D008881 2.9e-10 68.2 51 62.7
Cc02_g05250 Coffea canephora HOM05D007120 ORTHO05D008881 3.8e-10 67.8 58 55.2
Gohir.A13G007800 Gossypium hirsutum HOM05D007120 ORTHO05D008881 3.8e-10 67.8 56 55.4
FvH4_7g26050 Fragaria vesca HOM05D007120 ORTHO05D008881 4.9e-10 67.4 59 54.2
FAN10G2835 Fragaria x ananassa HOM05D007120 ORTHO05D008881 4.9e-10 67.4 59 54.2
MD01G1169000 Malus domestica HOM05D007120 ORTHO05D008881 4.9e-10 67.4 43 65.1
Oeu006064.1 Olea europaea HOM05D007120 ORTHO05D008881 4.9e-10 67.4 62 50.0
Migut.F00570 Erythranthe guttata HOM05D007120 ORTHO05D008881 1.1e-09 66.2 59 57.6
Lsat_1_v5_gn_6_11060 Lactuca sativa HOM05D007120 ORTHO05D008881 1.1e-09 66.2 56 51.8
Thecc.10G184500 Theobroma cacao HOM05D007120 ORTHO05D008881 1.1e-09 66.2 56 53.6
Sp4g23080 Schrenkiella parvula HOM05D007120 ORTHO05D008881 1.4e-09 65.9 53 52.8
C04p16380 Brassica napus HOM05D007120 ORTHO05D008881 1.9e-09 65.5 50 50.0
Atru.chr12.199 Acer truncatum HOM05D007120 ORTHO05D008881 2.4e-09 65.1 44 59.1
A03p22930 Brassica napus HOM05D007120 ORTHO05D008881 2.4e-09 65.1 55 50.9
BolC3t15101H Brassica oleracea HOM05D007120 ORTHO05D008881 2.4e-09 65.1 55 50.9
BraA03t11516Z Brassica rapa HOM05D007120 ORTHO05D008881 2.4e-09 65.1 55 50.9
Os07g0680300 Oryza sativa ssp. japonica HOM05D007120 ORTHO05D008881 2.4e-09 65.1 56 57.1
CANSAT56G4069 Cannabis sativa HOM05D007120 ORTHO05D008881 5.4e-09 63.9 57 54.4
Glyma.06G141900 Glycine max HOM05D007120 ORTHO05D008881 5.4e-09 63.9 44 63.6
RcHm_v2.0_Chr1g0372461 Rosa chinensis HOM05D007120 ORTHO05D008881 5.4e-09 63.9 43 60.5
RcHm_v2.0_Chr7g0235281 Rosa chinensis HOM05D007120 ORTHO05D008881 5.4e-09 63.9 43 60.5
RcHm_v2.0_Chr7g0235311 Rosa chinensis HOM05D007120 ORTHO05D008881 5.4e-09 63.9 43 60.5
GSVIVG01032659001 Vitis vinifera HOM05D007120 ORTHO05D008881 5.4e-09 63.9 48 60.4
BcaC02g12732 Brassica carinata HOM05D007120 ORTHO05D008881 7.1e-09 63.5 51 51.0
A05p01890 Brassica napus HOM05D007120 ORTHO05D008881 7.1e-09 63.5 51 51.0
C04p68540 Brassica napus HOM05D007120 ORTHO05D008881 7.1e-09 63.5 53 49.1
BolC4t28353H Brassica oleracea HOM05D007120 ORTHO05D008881 7.1e-09 63.5 53 49.1
Dinv34497 Davidia involucrata HOM05D006907 ORTHO05D008598 7.1e-09 63.5 44 63.6
PGSC0003DMG400020601 Solanum tuberosum HOM05D007120 ORTHO05D008881 7.1e-09 63.5 62 51.6
A04p31140 Brassica napus HOM05D007120 ORTHO05D008881 9.3e-09 63.2 53 49.1
C04p02230 Brassica napus HOM05D007120 ORTHO05D008881 9.3e-09 63.2 51 51.0
BolC4t21869H Brassica oleracea HOM05D007120 ORTHO05D008881 9.3e-09 63.2 51 51.0
BraA04t18569Z Brassica rapa HOM05D007120 ORTHO05D008881 9.3e-09 63.2 53 49.1
HanXRQChr02g0048061 Helianthus annuus HOM05D007120 ORTHO05D008881 9.3e-09 63.2 55 56.4
Lj1g0003388 Lotus japonicus HOM05D007120 ORTHO05D008881 1.6e-08 62.4 44 63.6
Lalb_Chr11g0067731 Lupinus albus HOM05D007120 ORTHO05D008881 1.6e-08 62.4 44 63.6
Solyc03g095730.4 Solanum lycopersicum HOM05D007120 ORTHO05D008881 1.6e-08 62.4 57 54.4
BcaB01g03516 Brassica carinata HOM05D007120 ORTHO05D008881 2.1e-08 62.0 50 54.0
CAN.G1229.12 Capsicum annuum HOM05D007120 ORTHO05D008881 2.1e-08 62.0 62 50.0
CARHR135860 Cardamine hirsuta HOM05D007120 ORTHO05D008881 2.1e-08 62.0 55 49.1
HanXRQChr10g0312991 Helianthus annuus HOM05D007120 ORTHO05D008881 2.1e-08 62.0 42 61.9
Phvul.009G043000 Phaseolus vulgaris HOM05D007120 ORTHO05D008881 2.1e-08 62.0 44 63.6
C01p26040 Brassica napus HOM05D007120 ORTHO05D008881 2.7e-08 61.6 51 49.0
Glyma.04G223400 Glycine max HOM05D007120 ORTHO05D008881 3.5e-08 61.2 44 61.4
MBI15_g39383_MAGBIO Magnolia biondii HOM05D007120 ORTHO05D008881 3.5e-08 61.2 57 56.1
Medtr3g093810 Medicago truncatula HOM05D007120 ORTHO05D008881 3.5e-08 61.2 44 61.4
ATR1127G135 Amborella trichopoda HOM05D007120 ORTHO05D008881 6.0e-08 60.5 56 48.2
Thhalv10017507m.g Eutrema salsugineum HOM05D007120 ORTHO05D008881 6.0e-08 60.5 55 52.7
Lalb_Chr23g0272151 Lupinus albus HOM05D007120 ORTHO05D008881 6.0e-08 60.5 44 61.4
CiPaw.09G151000 Carya illinoinensis HOM05D007120 ORTHO05D008881 1.0e-07 59.7 60 46.7
Manes.10G002800 Manihot esculenta HOM05D007120 ORTHO05D008881 1.0e-07 59.7 52 53.8
Hund13439 Selenicereus undatus HOM05D007120 ORTHO05D008881 1.0e-07 59.7 60 48.3
Manes.07G142200 Manihot esculenta HOM05D007120 ORTHO05D008881 1.3e-07 59.3 45 57.8
C01p18970 Brassica napus HOM05D007120 ORTHO05D008881 3.0e-07 58.2 48 52.1
Lalb_Chr08g0239241 Lupinus albus HOM05D007120 ORTHO05D008881 3.9e-07 57.8 44 56.8
AL4G38650 Arabidopsis lyrata HOM05D007120 ORTHO05D008881 5.1e-07 57.4 55 43.6
AT2G40765 Arabidopsis thaliana HOM05D007120 ORTHO05D008881 5.1e-07 57.4 55 43.6
Carub.0004s2306 Capsella rubella HOM05D007120 ORTHO05D008881 5.1e-07 57.4 55 41.8
FAN01G0895 Fragaria x ananassa HOM05D007120 ORTHO05D008881 6.7e-07 57.0 76 42.1
Nitab4.5_0000375g0220 Nicotiana tabacum HOM05D007120 ORTHO05D008881 1.1e-06 56.2 59 49.2
DCAR_014662 Daucus carota HOM05D007120 ORTHO05D008881 1.5e-06 55.8 55 45.5


User provided reference genes

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