Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G2202 Fragaria x ananassa HOM05D040940 ORTHO05D035723 2.7e-67 258.5 126 100.0
FAN16G1407 Fragaria x ananassa HOM05D040940 ORTHO05D035723 1.0e-66 256.5 126 99.2
FvH4_3g11710 Fragaria vesca HOM05D040940 ORTHO05D035723 6.3e-64 247.3 126 96.8
RcHm_v2.0_Chr3g0455001 Rosa chinensis HOM05D000519 ORTHO05D000959 2.1e-11 72.8 112 37.5
RcHm_v2.0_Chr5g0010621 Rosa chinensis HOM05D000519 ORTHO05D000959 8.1e-11 70.9 91 44.0
RcHm_v2.0_Chr1g0361291 Rosa chinensis HOM05D000519 ORTHO05D000959 1.8e-10 69.7 85 45.9
FvH4_3g07950 Fragaria vesca HOM05D000519 ORTHO05D000959 3.1e-10 68.9 122 39.3
FAN16G1004 Fragaria x ananassa HOM05D000519 ORTHO05D000959 3.1e-10 68.9 122 39.3
Gohir.A06G153900 Gossypium hirsutum HOM05D000519 ORTHO05D000959 6.9e-10 67.8 91 44.0
FAN25G0271 Fragaria x ananassa HOM05D000519 ORTHO05D000959 9.0e-10 67.4 115 39.1
FAN11G3787 Fragaria x ananassa HOM05D000519 ORTHO05D000959 2.0e-09 66.2 122 40.2
Nn3g21163 Nelumbo nucifera HOM05D000519 ORTHO05D000959 2.0e-09 66.2 119 32.8
CiPaw.09G103500 Carya illinoinensis HOM05D000519 ORTHO05D000959 2.6e-09 65.9 110 38.2
MD10G1333500 Malus domestica HOM05D000519 ORTHO05D000959 2.6e-09 65.9 113 37.2
Nn3g21162 Nelumbo nucifera HOM05D000519 ORTHO05D000959 2.6e-09 65.9 119 32.8
Thecc.06G234700 Theobroma cacao HOM05D000519 ORTHO05D000959 3.4e-09 65.5 114 37.7
Eucgr.E03923 Eucalyptus grandis HOM05D000519 ORTHO05D000959 4.5e-09 65.1 92 39.1
FvH4_3g00830 Fragaria vesca HOM05D000519 ORTHO05D000959 1.3e-08 63.5 112 39.3
Prupe.4G009000 Prunus persica HOM05D000519 ORTHO05D000959 1.3e-08 63.5 105 37.1
Duzib205G0308 Durio zibethinus HOM05D000519 ORTHO05D000959 1.7e-08 63.2 92 39.1
GSVIVG01003320001 Vitis vinifera HOM05D000519 ORTHO05D000959 1.7e-08 63.2 111 36.9
Lalb_Chr15g0088031 Lupinus albus HOM05D000519 ORTHO05D000959 2.2e-08 62.8 115 34.8
QL04p088239 Quercus lobata HOM05D000519 ORTHO05D000959 2.2e-08 62.8 65 46.2
Cfa000088 Carpinus fangiana HOM05D000519 ORTHO05D000959 3.8e-08 62.0 114 36.0
DCAR_002223 Daucus carota HOM05D000519 ORTHO05D000959 3.8e-08 62.0 115 34.8
Gohir.D06G160700 Gossypium hirsutum HOM05D000519 ORTHO05D000959 3.8e-08 62.0 120 34.2
unitig_32.g11374 Utricularia gibba HOM05D000519 ORTHO05D000959 3.8e-08 62.0 85 37.6
Atru.chr1.2387 Acer truncatum HOM05D000519 ORTHO05D000959 4.9e-08 61.6 105 40.0
COL.COLO4_31900 Corchorus olitorius HOM05D000919 ORTHO05D001187 4.9e-08 61.6 85 43.5
Duzib192G0996 Durio zibethinus HOM05D000519 ORTHO05D000959 4.9e-08 61.6 116 37.1
Gohir.A06G154000 Gossypium hirsutum HOM05D000519 ORTHO05D000959 4.9e-08 61.6 117 35.0
Gorai.010G187500 Gossypium raimondii HOM05D000519 ORTHO05D000959 4.9e-08 61.6 120 34.2
MD05G1358900 Malus domestica HOM05D000519 ORTHO05D000959 4.9e-08 61.6 117 37.6
Prupe.7G005600 Prunus persica HOM05D000519 ORTHO05D000959 4.9e-08 61.6 116 33.6
RcHm_v2.0_Chr5g0010541 Rosa chinensis HOM05D000519 ORTHO05D019175 4.9e-08 61.6 122 38.5
Sed0007435 Sechium edule HOM05D000519 ORTHO05D000959 4.9e-08 61.6 80 40.0
CAN.G1263.20 Capsicum annuum HOM05D000519 ORTHO05D000959 6.4e-08 61.2 91 37.4
Haze_09252 Corylus avellana HOM05D000519 ORTHO05D000959 6.4e-08 61.2 114 34.2
DCAR_002225 Daucus carota HOM05D000519 ORTHO05D000959 6.4e-08 61.2 117 34.2
Thhalv10001076m.g Eutrema salsugineum HOM05D000519 ORTHO05D000959 6.4e-08 61.2 92 39.1
MD12G1005200 Malus domestica HOM05D000519 ORTHO05D000959 6.4e-08 61.2 133 35.3
MD14G1003700 Malus domestica HOM05D000519 ORTHO05D000959 6.4e-08 61.2 117 37.6
RcHm_v2.0_Chr4g0409301 Rosa chinensis HOM05D000054 ORTHO05D000171 6.4e-08 61.2 74 45.9
Sopen04g006920 Solanum pennellii HOM05D000519 ORTHO05D000959 6.4e-08 61.2 121 34.7
Haze_06945 Corylus avellana HOM05D000519 ORTHO05D000959 8.4e-08 60.8 118 33.9
Prupe.4G008900 Prunus persica HOM05D000519 ORTHO05D000959 8.4e-08 60.8 129 35.7
Sc17g0007820 Simmondsia chinensis HOM05D000519 ORTHO05D000959 8.4e-08 60.8 81 39.5
Ca_00730_v3 Cicer arietinum L. HOM05D000519 ORTHO05D000959 1.1e-07 60.5 79 41.8
Eucgr.E03921 Eucalyptus grandis HOM05D000519 ORTHO05D000959 1.1e-07 60.5 89 37.1
RcHm_v2.0_Chr3g0476921 Rosa chinensis HOM05D000519 ORTHO05D000959 1.1e-07 60.5 84 42.9
RcHm_v2.0_Chr3g0476961 Rosa chinensis HOM05D000519 ORTHO05D000959 1.1e-07 60.5 84 42.9
RcHm_v2.0_Chr5g0040441 Rosa chinensis HOM05D000054 ORTHO05D000171 1.4e-07 60.1 74 44.6
Solyc04g014790.1 Solanum lycopersicum HOM05D000519 ORTHO05D000959 1.4e-07 60.1 121 33.9
Aa31sc118G120 Aethionema arabicum HOM05D000519 ORTHO05D000959 1.9e-07 59.7 90 37.8
A06p44980 Brassica napus HOM05D000519 ORTHO05D000959 1.9e-07 59.7 123 32.5
BraA06t27369Z Brassica rapa HOM05D000519 ORTHO05D000959 1.9e-07 59.7 123 32.5
Oeu047064.1 Olea europaea HOM05D000519 ORTHO05D000959 1.9e-07 59.7 111 34.2
Sc24g0000290 Simmondsia chinensis HOM05D000519 ORTHO05D000959 1.9e-07 59.7 121 33.9
Thecc.03G313400 Theobroma cacao HOM05D000519 ORTHO05D000959 1.9e-07 59.7 81 42.0
Aqoxy1G04038 Aquilegia oxysepala HOM05D000519 ORTHO05D000959 2.4e-07 59.3 83 41.0
Duzib160G0143 Durio zibethinus HOM05D000519 ORTHO05D000959 2.4e-07 59.3 121 35.5
MD12G1006000 Malus domestica HOM05D000519 ORTHO05D000959 2.4e-07 59.3 115 37.4
RcHm_v2.0_Chr5g0001051 Rosa chinensis HOM05D000519 ORTHO05D000959 2.4e-07 59.3 109 38.5
AL4G28250 Arabidopsis lyrata HOM05D000519 ORTHO05D000959 3.2e-07 58.9 117 35.0
CANSAT56G2160 Cannabis sativa HOM05D000519 ORTHO05D000959 3.2e-07 58.9 114 34.2
Hma1.2p1_0657F.1_g197050 Hydrangea macrophylla HOM05D000519 ORTHO05D000959 3.2e-07 58.9 93 36.6
Manes.08G041000 Manihot esculenta HOM05D000519 ORTHO05D000959 3.2e-07 58.9 85 34.1
Nn1g07421 Nelumbo nucifera HOM05D000519 ORTHO05D000959 3.2e-07 58.9 116 30.2
RcHm_v2.0_Chr5g0010601 Rosa chinensis HOM05D000519 ORTHO05D019175 3.2e-07 58.9 126 37.3
Dinv13973 Davidia involucrata HOM05D000519 ORTHO05D000959 4.2e-07 58.5 109 36.7
Potri.006G014500 Populus trichocarpa HOM05D000519 ORTHO05D000959 4.2e-07 58.5 112 34.8
Prupe.4G009200 Prunus persica HOM05D000519 ORTHO05D000959 4.2e-07 58.5 121 34.7
PGR042G1719 Punica granatum HOM05D000519 ORTHO05D000959 4.2e-07 58.5 92 37.0
Sed0023459 Sechium edule HOM05D000519 ORTHO05D000959 4.2e-07 58.5 89 33.7
arahy.Tifrunner.gnm1.ann1.4ZS9PZ Arachis hypogaea HOM05D000519 ORTHO05D000959 5.5e-07 58.2 109 33.9
Cfa019521 Carpinus fangiana HOM05D000519 ORTHO05D000959 5.5e-07 58.2 114 35.1
CsaV3_6G052130 Cucumis sativus L. HOM05D000060 ORTHO05D000959 5.5e-07 58.2 91 34.1
Nitab4.5_0001109g0080 Nicotiana tabacum HOM05D000519 ORTHO05D000959 5.5e-07 58.2 89 37.1
BcaB01g03103 Brassica carinata HOM05D000519 ORTHO05D000959 7.1e-07 57.8 110 35.5
CsaV3_7G013890 Cucumis sativus L. HOM05D000519 ORTHO05D000959 7.1e-07 57.8 85 34.1
Eucgr.E03920 Eucalyptus grandis HOM05D000519 ORTHO05D000959 7.1e-07 57.8 80 40.0
Gohir.D06G160800 Gossypium hirsutum HOM05D000519 ORTHO05D000959 7.1e-07 57.8 115 32.2
Gorai.010G187700 Gossypium raimondii HOM05D000519 ORTHO05D000959 7.1e-07 57.8 115 32.2
Lsat_1_v5_gn_1_114780 Lactuca sativa HOM05D000519 ORTHO05D000959 7.1e-07 57.8 119 33.6
SalBow8G3278 Salvia bowleyana HOM05D000519 ORTHO05D000959 7.1e-07 57.8 84 38.1
AL8G10420 Arabidopsis lyrata HOM05D000519 ORTHO05D000959 9.3e-07 57.4 85 41.2
AUR62012807 Chenopodium quinoa HOM05D000519 ORTHO05D000959 9.3e-07 57.4 115 34.8
FAN21G0953 Fragaria x ananassa HOM05D000919 ORTHO05D001187 9.3e-07 57.4 87 44.8
MD05G1359200 Malus domestica HOM05D000519 ORTHO05D000959 9.3e-07 57.4 94 42.6
Psat4g004080 Pisum sativum HOM05D000519 ORTHO05D000959 9.3e-07 57.4 102 35.3
Gohir.A06G153800 Gossypium hirsutum HOM05D000519 ORTHO05D000959 1.2e-06 57.0 116 34.5
Gohir.A06G154100 Gossypium hirsutum HOM05D000519 ORTHO05D000959 1.2e-06 57.0 115 32.2
Sp2g12280 Schrenkiella parvula HOM05D000519 ORTHO05D000959 1.2e-06 57.0 123 34.1
Carub.0004s1417 Capsella rubella HOM05D000519 ORTHO05D000959 1.6e-06 56.6 118 33.1
Ciclev10009506m.g Citrus clementina HOM05D000519 ORTHO05D000959 1.6e-06 56.6 113 34.5
Gohir.D06G160600 Gossypium hirsutum HOM05D000519 ORTHO05D000959 1.6e-06 56.6 118 33.1
Gorai.010G187300 Gossypium raimondii HOM05D000519 ORTHO05D000959 1.6e-06 56.6 118 33.1
Manes.03G153900 Manihot esculenta HOM05D000519 ORTHO05D000959 1.6e-06 56.6 85 32.9
Nitab4.5_0004646g0100 Nicotiana tabacum HOM05D000519 ORTHO05D000959 1.6e-06 56.6 89 34.8
Rhsim02G0101200 Rhododendron simsii HOM05D000519 ORTHO05D000959 1.6e-06 56.6 82 37.8
TPR.G30458 Trifolium pratense HOM05D000519 ORTHO05D000959 1.6e-06 56.6 105 33.3
HPP92_024483 Vanilla planifolia HOM05D000519 ORTHO05D000959 1.6e-06 56.6 89 37.1
C07p31200 Brassica napus HOM05D000519 ORTHO05D000959 2.1e-06 56.2 123 32.5
Psat4g004120 Pisum sativum HOM05D000519 ORTHO05D000959 2.1e-06 56.2 102 34.3
PGSC0003DMG402023603 Solanum tuberosum HOM05D000519 ORTHO05D000959 2.1e-06 56.2 121 33.1
Aa31LG2G12610 Aethionema arabicum HOM05D000519 ORTHO05D000959 2.7e-06 55.8 89 36.0
BcaC06g31374 Brassica carinata HOM05D000519 ORTHO05D000959 2.7e-06 55.8 123 31.7
BcaC06g34241 Brassica carinata HOM05D000519 ORTHO05D000959 2.7e-06 55.8 123 32.5
BolC7t43661H Brassica oleracea HOM05D000519 ORTHO05D000959 2.7e-06 55.8 123 32.5
CSS0008277 Camellia sinensis var. sinensis HOM05D000519 ORTHO05D000959 2.7e-06 55.8 92 35.9
CSS0041609 Camellia sinensis var. sinensis HOM05D000519 ORTHO05D000959 2.7e-06 55.8 92 35.9
CDE06G2330 Ceratophyllum demersum HOM05D000519 ORTHO05D000959 2.7e-06 55.8 91 36.3
AUR62021846 Chenopodium quinoa HOM05D000519 ORTHO05D000959 2.7e-06 55.8 115 33.9
MELO3C008183.2 Cucumis melo HOM05D000519 ORTHO05D000959 2.7e-06 55.8 92 35.9
Eucgr.E03919 Eucalyptus grandis HOM05D000519 ORTHO05D000959 2.7e-06 55.8 92 35.9
Gohir.D01G221401 Gossypium hirsutum HOM05D000519 ORTHO05D000959 2.7e-06 55.8 89 37.1
Gorai.002G268000 Gossypium raimondii HOM05D000519 ORTHO05D000959 2.7e-06 55.8 89 37.1
Lalb_Chr18g0057041 Lupinus albus HOM05D000519 ORTHO05D000959 2.7e-06 55.8 105 34.3
Lalb_Chr20g0119301 Lupinus albus HOM05D000519 ORTHO05D000959 2.7e-06 55.8 93 37.6
RcHm_v2.0_Chr5g0001251 Rosa chinensis HOM05D000054 ORTHO05D000171 2.7e-06 55.8 74 43.2
arahy.Tifrunner.gnm1.ann1.WI67VP Arachis hypogaea HOM05D000519 ORTHO05D000959 3.5e-06 55.5 113 31.0
QL05p069227 Quercus lobata HOM05D000519 ORTHO05D000959 3.5e-06 55.5 112 32.1
TAR629G0911 Trochodendron aralioides HOM05D000519 ORTHO05D000959 3.5e-06 55.5 121 34.7
EL10Ac8g20214 Beta vulgaris HOM05D000519 ORTHO05D000959 4.6e-06 55.1 104 32.7
Carub.0008s0023 Capsella rubella HOM05D000519 ORTHO05D000959 4.6e-06 55.1 89 34.8
AUR62021847 Chenopodium quinoa HOM05D000519 ORTHO05D000959 4.6e-06 55.1 118 34.7
DCAR_004907 Daucus carota HOM05D000519 ORTHO05D000959 4.6e-06 55.1 77 39.0
Oeu009405.1 Olea europaea HOM05D000519 ORTHO05D000959 4.6e-06 55.1 100 35.0
RcHm_v2.0_Chr5g0009781 Rosa chinensis HOM05D000519 ORTHO05D000959 4.6e-06 55.1 97 41.2
HPP92_014276 Vanilla planifolia HOM05D000519 ORTHO05D000959 4.6e-06 55.1 79 41.8
MELO3C008065.2 Cucumis melo HOM05D000519 ORTHO05D000959 6.0e-06 54.7 88 34.1
HPP92_014273 Vanilla planifolia HOM05D000519 ORTHO05D000959 6.0e-06 54.7 89 37.1
ClCG09G021860 Citrullus lanatus HOM05D000519 ORTHO05D000959 7.9e-06 54.3 111 35.1
Medtr4g133540 Medicago truncatula HOM05D000519 ORTHO05D000959 7.9e-06 54.3 115 32.2
Phvul.003G084300 Phaseolus vulgaris HOM05D000519 ORTHO05D000959 7.9e-06 54.3 112 32.1
QL04p088219 Quercus lobata HOM05D000519 ORTHO05D000959 7.9e-06 54.3 82 37.8
RcHm_v2.0_Chr5g0001151 Rosa chinensis HOM05D000519 ORTHO05D000959 7.9e-06 54.3 85 37.6
RcHm_v2.0_Chr5g0009751 Rosa chinensis HOM05D000519 ORTHO05D000959 7.9e-06 54.3 107 37.4


User provided reference genes

Program Settings