Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G2135 Fragaria x ananassa HOM05D005193 ORTHO05D006316 0.0e+00 1760.3 924 100.0
FAN11G0281 Fragaria x ananassa HOM05D005193 ORTHO05D006316 0.0e+00 1666.7 939 92.9
FAN16G1885 Fragaria x ananassa HOM05D005193 ORTHO05D006316 0.0e+00 1577.8 887 92.4
RcHm_v2.0_Chr5g0040821 Rosa chinensis HOM05D005193 ORTHO05D006316 0.0e+00 1558.1 924 89.5
FAN25G0346 Fragaria x ananassa HOM05D005193 ORTHO05D006316 0.0e+00 1509.6 1007 81.6
FAN25G2894 Fragaria x ananassa HOM05D005193 ORTHO05D006316 0.0e+00 1393.3 957 79.9
MD03G1197400 Malus domestica HOM05D005193 ORTHO05D006316 0.0e+00 1328.5 919 75.2
FvH4_3g23170 Fragaria vesca HOM05D005193 ORTHO05D006316 0.0e+00 1326.2 741 93.7
Prupe.4G218100 Prunus persica HOM05D005193 ORTHO05D006316 0.0e+00 1290.4 854 77.0
QL08p009116 Quercus lobata HOM05D005193 ORTHO05D006316 0.0e+00 1204.9 909 68.6
CiPaw.11G192300 Carya illinoinensis HOM05D005193 ORTHO05D006316 0.0e+00 1104.7 916 63.5
Ciclev10007388m.g Citrus clementina HOM05D005193 ORTHO05D006316 3.2e-311 1071.6 916 61.2
Dinv40781 Davidia involucrata HOM05D005193 ORTHO05D006316 9.5e-311 1070.1 880 64.2
TAR627G0707 Trochodendron aralioides HOM05D005193 ORTHO05D006316 2.1e-310 1068.9 877 63.6
Thecc.07G032100 Theobroma cacao HOM05D005193 ORTHO05D006316 3.1e-309 1065.1 913 62.2
Atru.chr2.3490 Acer truncatum HOM05D005193 ORTHO05D006316 1.6e-305 1052.7 880 63.0
CANSAT11G2467 Cannabis sativa HOM05D005193 ORTHO05D006316 5.1e-304 1047.7 909 59.8
Actinidia10743 Actinidia chinensis HOM05D005193 ORTHO05D006316 4.3e-303 1044.6 916 60.3
Gohir.D01G069100 Gossypium hirsutum HOM05D005193 ORTHO05D006316 1.4e-301 1039.6 930 58.9
Potri.001G356700 Populus trichocarpa HOM05D005193 ORTHO05D006316 1.2e-300 1036.6 919 59.3
Hma1.2p1_0036F.1_g023390 Hydrangea macrophylla HOM05D005193 ORTHO05D006316 1.3e-299 1033.1 890 59.4
Gohir.A01G082500 Gossypium hirsutum HOM05D005193 ORTHO05D006316 6.5e-299 1030.8 930 58.7
TWI38G1184 Tripterygium wilfordii HOM05D005193 ORTHO05D006316 9.4e-298 1026.9 917 57.8
Duzib268G1225 Durio zibethinus HOM05D005193 ORTHO05D006316 2.7e-297 1025.4 923 58.7
Gorai.002G091400 Gossypium raimondii HOM05D005193 ORTHO05D006316 4.3e-295 1018.1 915 58.9
Sabra16G0234700 Salix brachista HOM05D005193 ORTHO05D006316 7.4e-295 1017.3 936 56.9
Glyma.14G021300 Glycine max HOM05D005193 ORTHO05D006316 1.7e-294 1016.1 917 58.0
RhsimUnG0248800 Rhododendron simsii HOM05D005193 ORTHO05D006316 2.2e-294 1015.8 969 56.3
VMungo0647G2043 Vigna mungo HOM05D005193 ORTHO05D006316 1.4e-293 1013.1 919 57.7
Nn1g03454 Nelumbo nucifera HOM05D005193 ORTHO05D006316 1.8e-293 1012.7 916 58.6
arahy.Tifrunner.gnm1.ann1.K04HM7 Arachis hypogaea HOM05D005193 ORTHO05D006316 1.5e-292 1009.6 908 57.4
Haze_09711 Corylus avellana HOM05D005193 ORTHO05D006316 1.3e-291 1006.5 892 59.8
LjContig00272g0004657 Lotus japonicus HOM05D005193 ORTHO05D006316 6.1e-289 997.7 925 57.2
Ca_11685_v3 Cicer arietinum L. HOM05D005193 ORTHO05D006316 1.7e-286 989.6 912 57.0
Phvul.008G270200 Phaseolus vulgaris HOM05D005193 ORTHO05D006316 1.5e-284 983.0 910 57.0
COL.COLO4_09693 Corchorus olitorius HOM05D005193 ORTHO05D006316 5.9e-284 981.1 962 57.1
Medtr1g056460 Medicago truncatula HOM05D005193 ORTHO05D006316 6.5e-283 977.6 912 57.2
arahy.Tifrunner.gnm1.ann1.J5TE7C Arachis hypogaea HOM05D005193 ORTHO05D006316 2.1e-281 972.6 908 56.1
Psat6g078440 Pisum sativum HOM05D005193 ORTHO05D006316 2.2e-278 962.6 909 56.1
MELO3C013149.2 Cucumis melo HOM05D005193 ORTHO05D006316 1.4e-272 943.3 909 55.6
GSVIVG01037690001 Vitis vinifera HOM05D005193 ORTHO05D006316 5.9e-268 927.9 733 65.1
CsaV3_7G021980 Cucumis sativus L. HOM05D005193 ORTHO05D006316 1.3e-267 926.8 909 54.2
Manes.15G068700 Manihot esculenta HOM05D005193 ORTHO05D006316 2.3e-264 916.0 786 60.3
TPR.G2822 Trifolium pratense HOM05D005193 ORTHO05D006316 8.3e-262 907.5 918 53.7
Aqoxy4G01697 Aquilegia oxysepala HOM05D005193 ORTHO05D006316 3.3e-258 895.6 918 52.2
MBI07_g09089_MAGBIO Magnolia biondii HOM05D005193 ORTHO05D006316 4.2e-258 895.2 933 53.2
Aqoxy1G03394 Aquilegia oxysepala HOM05D005193 ORTHO05D006316 7.2e-258 894.4 926 52.6
PGR031G1204 Punica granatum HOM05D005193 ORTHO05D006316 1.5e-255 886.7 911 53.2
PSO832G1529 Papaver somniferum HOM05D005193 ORTHO05D006316 2.2e-254 882.9 912 51.8
PSO210G7537 Papaver somniferum HOM05D005193 ORTHO05D006316 2.8e-254 882.5 913 52.2
Lsat_1_v5_gn_7_111080 Lactuca sativa HOM05D005193 ORTHO05D006316 9.2e-253 877.5 916 51.4
Sed0015549 Sechium edule HOM05D005193 ORTHO05D006316 3.5e-252 875.5 904 53.3
ECA236G2682 Erigeron canadensis HOM05D005193 ORTHO05D006316 4.0e-248 862.1 914 49.5
AT1G50730 Arabidopsis thaliana HOM05D005193 ORTHO05D006316 1.4e-245 853.6 908 50.1
MSTRG.6941 Avicennia marina HOM05D005193 ORTHO05D006316 1.4e-245 853.6 915 50.4
Cc05_g14020 Coffea canephora HOM05D005193 ORTHO05D006316 6.0e-244 848.2 911 50.1
HanXRQChr11g0335911 Helianthus annuus HOM05D005193 ORTHO05D006316 7.8e-244 847.8 872 50.9
THA.LOC104816145 Tarenaya hassleriana HOM05D005193 ORTHO05D006316 3.0e-243 845.9 920 48.5
Sopen12g001090 Solanum pennellii HOM05D005193 ORTHO05D006316 1.5e-242 843.6 915 50.6
Carub.0001s3976 Capsella rubella HOM05D005193 ORTHO05D006316 1.9e-242 843.2 909 49.1
Sp1g37570 Schrenkiella parvula HOM05D005193 ORTHO05D006316 2.5e-242 842.8 909 50.1
BraA06t23495Z Brassica rapa HOM05D005193 ORTHO05D006316 1.6e-236 823.5 910 49.1
Ah.06g182590 Amaranthus hybridus HOM05D005193 ORTHO05D006316 2.3e-235 819.7 921 48.6
Migut.M01736 Erythranthe guttata HOM05D005193 ORTHO05D006316 1.6e-233 813.5 898 49.0
Eucgr.F03483 Eucalyptus grandis HOM05D005193 ORTHO05D006316 1.4e-232 810.4 797 55.6
BcaC08g43253 Brassica carinata HOM05D005193 ORTHO05D006316 1.5e-231 807.0 906 48.5
BcaB07g33512 Brassica carinata HOM05D005193 ORTHO05D006316 4.1e-229 798.9 898 48.7
C06p05990 Brassica napus HOM05D005193 ORTHO05D006316 7.1e-229 798.1 911 48.4
A06p02890 Brassica napus HOM05D005193 ORTHO05D006316 5.1e-227 792.0 907 47.9
CARHR040830 Cardamine hirsuta HOM05D005193 ORTHO05D006316 8.9e-224 781.2 846 50.5
Oeu041839.1 Olea europaea HOM05D005193 ORTHO05D006316 2.6e-223 779.6 765 53.2
Thhalv10011218m.g Eutrema salsugineum HOM05D005193 ORTHO05D006316 1.1e-221 774.2 931 47.0
Aa31LG10G3620 Aethionema arabicum HOM05D005193 ORTHO05D006316 8.7e-219 764.6 910 46.6
ClCG09G010950 Citrullus lanatus HOM05D005193 ORTHO05D006316 6.6e-211 738.4 962 46.0
BolC6t35712H Brassica oleracea HOM05D005193 ORTHO05D006316 3.3e-210 736.1 941 45.4
AUR62020399 Chenopodium quinoa HOM05D005193 ORTHO05D006316 2.8e-209 733.0 840 49.4
AUR62015820 Chenopodium quinoa HOM05D005193 ORTHO05D006316 1.6e-201 707.2 909 46.2
Cpa.g.sc12.274 Carica papaya HOM05D005193 ORTHO05D006316 2.9e-198 696.4 651 57.8
HPP92_008858 Vanilla planifolia HOM05D005193 ORTHO05D006316 6.7e-179 632.1 876 42.2
Peaxi162Scf00660g00118 Petunia axillaris HOM05D005193 ORTHO05D006316 1.5e-178 630.9 687 50.8
Hund02018 Selenicereus undatus HOM05D005193 ORTHO05D006316 6.1e-172 609.0 964 38.2
vmacro09699 Vaccinium macrocarpon HOM05D005193 ORTHO05D006316 2.5e-165 587.0 501 59.7
Lalb_Chr17g0348621 Lupinus albus HOM05D005193 ORTHO05D006316 2.0e-154 550.8 514 57.0
Mapoly0038s0063 Marchantia polymorpha HOM05D005193 ORTHO05D006316 7.0e-152 542.3 861 36.8
Pp3c16_8580 Physcomitrium patens HOM05D005193 ORTHO05D006316 4.0e-147 526.6 861 36.2
SMO115G0237 Selaginella moellendorffii HOM05D005193 ORTHO05D006316 6.6e-142 509.2 804 37.7
Nitab4.5_0000168g0220 Nicotiana tabacum HOM05D005193 ORTHO05D006316 5.9e-135 486.1 518 51.4
arahy.Tifrunner.gnm1.ann1.6PV7EE Arachis hypogaea HOM05D005193 ORTHO05D006316 5.8e-130 469.5 433 57.5
CBR_g49709 Chara braunii HOM05D005193 ORTHO05D000048 2.1e-124 451.1 858 34.7
CSS0020168 Camellia sinensis var. sinensis HOM05D005193 ORTHO05D006316 1.7e-121 441.4 480 51.5
Nitab4.5_0003450g0040 Nicotiana tabacum HOM05D005193 ORTHO05D006316 1.4e-107 395.2 466 47.6
Lj1C877G15 Lonicera japonica HOM05D005193 ORTHO05D006316 2.2e-105 387.9 415 50.6
Lalb_Chr17g0348631 Lupinus albus HOM05D005193 ORTHO05D006316 5.4e-104 383.3 384 53.6
AagrBONN_evm.TU.Sc2ySwM_344.2169 Anthoceros agrestis HOM05D005193 ORTHO05D006316 3.6e-100 370.5 644 36.6
ATR0585G046 Amborella trichopoda HOM05D005193 ORTHO05D006316 6.6e-94 349.7 357 49.0
arahy.Tifrunner.gnm1.ann1.89LBMG Arachis hypogaea HOM05D005193 ORTHO05D006316 1.9e-93 348.2 333 55.0
Nitab4.5_0003450g0030 Nicotiana tabacum HOM05D005193 ORTHO05D006316 8.4e-81 306.2 406 43.1
Lj1C877G9 Lonicera japonica HOM05D005193 ORTHO05D006316 5.5e-80 303.5 269 59.9
CDE02G4624 Ceratophyllum demersum HOM05D005193 ORTHO05D006316 4.6e-79 300.4 381 47.5
SalBow8G4471 Salvia bowleyana HOM05D005193 ORTHO05D006316 1.4e-62 245.7 477 34.8
arahy.Tifrunner.gnm1.ann1.DP08C5 Arachis hypogaea HOM05D005193 ORTHO05D006316 1.1e-56 226.1 263 50.2
arahy.Tifrunner.gnm1.ann1.SW2PFC Arachis hypogaea HOM05D005193 ORTHO05D006316 1.1e-56 226.1 263 50.2
AUR62015822 Chenopodium quinoa HOM05D005193 ORTHO05D006316 6.7e-54 216.9 536 30.4
CDE02G0254 Ceratophyllum demersum HOM05D005193 ORTHO05D006316 2.2e-52 211.8 286 41.3
Nitab4.5_0000168g0230 Nicotiana tabacum HOM05D005193 ORTHO05D006316 1.7e-49 202.2 209 48.3
Solyc12g005090.3 Solanum lycopersicum HOM05D005193 ORTHO05D006316 3.3e-45 188.0 202 46.5
Lsat_1_v5_gn_6_67380 Lactuca sativa HOM05D005193 ORTHO05D006316 9.1e-43 179.9 204 49.0
Lsat_1_v5_gn_9_67960 Lactuca sativa HOM05D005193 ORTHO05D006316 9.1e-43 179.9 204 49.0
CAN.G1219.3 Capsicum annuum HOM05D005193 ORTHO05D006316 1.0e-41 176.4 207 46.4
CDE02G0065 Ceratophyllum demersum HOM05D005193 ORTHO05D006316 1.8e-35 155.6 212 40.6
Peaxi162Scf00660g00119 Petunia axillaris HOM05D005193 ORTHO05D006316 1.5e-32 146.0 152 46.7
Gorai.011G223800 Gossypium raimondii HOM05D005193 ORTHO05D006316 1.2e-31 142.9 169 47.9
ATR0585G123 Amborella trichopoda HOM05D005193 ORTHO05D006316 1.5e-29 136.0 169 45.6
CDE02G4589 Ceratophyllum demersum HOM05D005193 ORTHO05D006316 4.4e-29 134.4 246 36.2
Sabra06G0024500 Salix brachista HOM05D005193 ORTHO05D006316 7.0e-27 127.1 84 70.2
Sabra16G0098300 Salix brachista HOM05D005193 ORTHO05D006316 4.5e-26 124.4 82 70.7
EL10Ac4g07765 Beta vulgaris HOM05D005193 ORTHO05D006316 2.3e-25 122.1 185 41.1
MD16G1253600 Malus domestica HOM05D005193 ORTHO05D006316 1.2e-23 116.3 65 83.1
Cpa.g.sc12.275 Carica papaya HOM05D005193 ORTHO05D006316 8.0e-23 113.6 95 55.8
Gohir.D10G199632 Gossypium hirsutum HOM05D005193 ORTHO05D006316 8.0e-23 113.6 140 45.7
CSS0028155 Camellia sinensis var. sinensis HOM05D005193 ORTHO05D006316 1.0e-22 113.2 90 63.3
CSS0039097 Camellia sinensis var. sinensis HOM05D005193 ORTHO05D006316 1.0e-22 113.2 90 63.3
CAN.G1219.2 Capsicum annuum HOM05D005193 ORTHO05D006316 1.8e-22 112.5 96 55.2
AagrBONN_evm.TU.Sc2ySwM_362.1473 Anthoceros agrestis HOM05D005193 ORTHO05D006316 5.2e-22 110.9 110 51.8
arahy.Tifrunner.gnm1.ann1.BLY3DW Arachis hypogaea HOM05D005193 ORTHO05D006316 1.7e-20 105.9 90 56.7
Haze_09712 Corylus avellana HOM05D005193 ORTHO05D006316 7.0e-19 100.5 113 55.8
CSS0047254 Camellia sinensis var. sinensis HOM05D005193 ORTHO05D006316 3.5e-18 98.2 192 35.9
Gorai.001G274400 Gossypium raimondii HOM05D005193 ORTHO05D006316 3.3e-16 91.7 121 43.8
Aqoxy4G00029 Aquilegia oxysepala HOM05D002071 ORTHO05D002109 1.6e-15 89.4 97 42.3
Cpa.g.sc12.273 Carica papaya HOM05D005193 ORTHO05D006316 2.1e-15 89.0 123 46.3
Gohir.D08G017066 Gossypium hirsutum HOM05D005193 ORTHO05D006316 2.1e-15 89.0 75 60.0
GSVIVG01037691001 Vitis vinifera HOM05D005193 ORTHO05D006316 8.0e-15 87.0 113 49.6
ATR0585G071 Amborella trichopoda HOM05D005193 ORTHO05D006316 1.8e-14 85.9 128 35.2
TPR.G2800 Trifolium pratense HOM05D005193 ORTHO05D006316 1.8e-14 85.9 118 47.5
SalBow8G0199 Salvia bowleyana HOM05D005193 ORTHO05D006316 9.8e-13 80.1 87 47.1
Oeu041837.1 Olea europaea HOM05D005193 ORTHO05D006316 1.1e-11 76.6 91 42.9
Eucgr.F03486 Eucalyptus grandis HOM05D005193 ORTHO05D006316 7.0e-11 73.9 113 45.1
SEGI_35263 Sequoiadendron giganteum HOM05D005193 ORTHO05D006316 8.6e-09 67.0 60 50.0
SEGI_10601 Sequoiadendron giganteum HOM05D005193 ORTHO05D006316 2.5e-08 65.5 79 40.5
SEGI_12195 Sequoiadendron giganteum HOM05D005193 ORTHO05D006316 7.3e-08 63.9 92 35.9


User provided reference genes

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