Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G2110 Fragaria x ananassa HOM05D005227 ORTHO05D006379 6.7e-48 193.7 102 100.0
FvH4_3g13100 Fragaria vesca HOM05D005227 ORTHO05D006379 2.0e-47 192.2 102 99.0
FAN11G3694 Fragaria x ananassa HOM05D005227 ORTHO05D006379 2.0e-47 192.2 102 99.0
FAN16G1292 Fragaria x ananassa HOM05D005227 ORTHO05D006379 5.7e-47 190.7 102 98.0
RcHm_v2.0_Chr3g0492041 Rosa chinensis HOM05D005227 ORTHO05D006379 6.3e-46 187.2 102 96.1
RcHm_v2.0_Chr5g0021361 Rosa chinensis HOM05D005227 ORTHO05D006379 2.4e-45 185.3 102 95.1
ClCG03G004140 Citrullus lanatus HOM05D005227 ORTHO05D006379 4.5e-36 154.5 101 74.3
GSVIVG01012160001 Vitis vinifera HOM05D005227 ORTHO05D006379 4.5e-36 154.5 101 77.2
Prupe.1G101300 Prunus persica HOM05D005227 ORTHO05D006379 1.0e-35 153.3 101 75.2
Cc09_g04960 Coffea canephora HOM05D005227 ORTHO05D006379 1.7e-35 152.5 101 76.2
Sed0019581 Sechium edule HOM05D005227 ORTHO05D006379 1.7e-35 152.5 101 73.3
Atru.chr9.939 Acer truncatum HOM05D005227 ORTHO05D006379 2.2e-35 152.1 101 74.3
PGR004G2312 Punica granatum HOM05D005227 ORTHO05D006379 2.2e-35 152.1 101 75.2
CsaV3_1G010070 Cucumis sativus L. HOM05D005227 ORTHO05D006379 2.9e-35 151.8 101 73.3
Nn7g38372 Nelumbo nucifera HOM05D005227 ORTHO05D006379 2.9e-35 151.8 99 77.8
PGSC0003DMG400031097 Solanum tuberosum HOM05D005227 ORTHO05D006379 2.9e-35 151.8 96 77.1
CSS0013199 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 3.8e-35 151.4 101 77.2
Dinv32750 Davidia involucrata HOM05D005227 ORTHO05D006379 3.8e-35 151.4 96 79.2
SGA_v2.0_scaffold1G00678 Striga asiatica HOM05D005227 ORTHO05D006379 3.8e-35 151.4 97 78.4
MSTRG.21442 Avicennia marina HOM05D005227 ORTHO05D006379 5.0e-35 151.0 95 80.0
MELO3C002397.2 Cucumis melo HOM05D005227 ORTHO05D006379 5.0e-35 151.0 101 73.3
Lalb_Chr10g0097141 Lupinus albus HOM05D005227 ORTHO05D006379 5.0e-35 151.0 101 75.2
Peaxi162Scf00254g00421 Petunia axillaris HOM05D005227 ORTHO05D006379 5.0e-35 151.0 96 76.0
CAN.G585.8 Capsicum annuum HOM05D005227 ORTHO05D006379 6.5e-35 150.6 96 77.1
Peaxi162Scf00890g00011 Petunia axillaris HOM05D005227 ORTHO05D006379 6.5e-35 150.6 101 73.3
Glyma.03G013100 Glycine max HOM05D005227 ORTHO05D006379 8.5e-35 150.2 101 73.3
Sed0010668 Sechium edule HOM05D005227 ORTHO05D006379 8.5e-35 150.2 101 72.3
Migut.D00502 Erythranthe guttata HOM05D005227 ORTHO05D006379 1.1e-34 149.8 97 77.3
MD05G1245000 Malus domestica HOM05D005227 ORTHO05D006379 1.1e-34 149.8 93 78.5
QL08p045548 Quercus lobata HOM05D005227 ORTHO05D006379 1.1e-34 149.8 100 74.0
Sopen07g029430 Solanum pennellii HOM05D005227 ORTHO05D006379 1.1e-34 149.8 96 76.0
Nitab4.5_0000743g0160 Nicotiana tabacum HOM05D005227 ORTHO05D006379 1.5e-34 149.4 96 76.0
Atru.chr8.505 Acer truncatum HOM05D005227 ORTHO05D006379 1.9e-34 149.1 101 72.3
PGR142G0063 Punica granatum HOM05D005227 ORTHO05D006379 2.5e-34 148.7 101 73.3
QL07p000144 Quercus lobata HOM05D005227 ORTHO05D006379 2.5e-34 148.7 100 73.0
HanXRQChr01g0006251 Helianthus annuus HOM05D005227 ORTHO05D006379 3.2e-34 148.3 99 74.7
TWI81G0571 Tripterygium wilfordii HOM05D005227 ORTHO05D006379 3.2e-34 148.3 101 76.2
Sopen07g027180 Solanum pennellii HOM05D005227 ORTHO05D006379 4.2e-34 147.9 96 74.0
PGSC0003DMG401020444 Solanum tuberosum HOM05D005227 ORTHO05D006379 4.2e-34 147.9 96 74.0
Solyc07g056070.2 Solanum lycopersicum HOM05D005227 ORTHO05D006379 5.5e-34 147.5 96 74.0
CANSAT21G1070 Cannabis sativa HOM05D005227 ORTHO05D006379 7.2e-34 147.1 101 74.3
Phvul.010G097600 Phaseolus vulgaris HOM05D005227 ORTHO05D006379 1.2e-33 146.4 97 75.3
Solyc07g055030.1 Solanum lycopersicum HOM05D005227 ORTHO05D006379 1.2e-33 146.4 96 72.9
unitig_8.g3748 Utricularia gibba HOM05D005227 ORTHO05D006379 1.2e-33 146.4 99 73.7
Manes.03G071400 Manihot esculenta HOM05D005227 ORTHO05D006379 1.6e-33 146.0 101 73.3
Glyma.07G072800 Glycine max HOM05D005227 ORTHO05D006379 2.1e-33 145.6 101 71.3
TWI15G1171 Tripterygium wilfordii HOM05D005227 ORTHO05D006379 2.1e-33 145.6 101 73.3
CiPaw.09G138800 Carya illinoinensis HOM05D005227 ORTHO05D006379 2.7e-33 145.2 100 71.0
MD10G1226300 Malus domestica HOM05D005227 ORTHO05D006379 3.6e-33 144.8 93 76.3
Ciclev10017275m.g Citrus clementina HOM05D005227 ORTHO05D006379 8.0e-33 143.7 96 74.0
Lalb_Chr17g0339811 Lupinus albus HOM05D005227 ORTHO05D006379 8.0e-33 143.7 101 70.3
Sc15g0005680 Simmondsia chinensis HOM05D005227 ORTHO05D006379 1.0e-32 143.3 96 76.0
Thecc.03G046200 Theobroma cacao HOM05D005227 ORTHO05D006379 1.0e-32 143.3 101 70.3
arahy.Tifrunner.gnm1.ann1.59GI1K Arachis hypogaea HOM05D005227 ORTHO05D006379 1.4e-32 142.9 96 74.0
arahy.Tifrunner.gnm1.ann1.GL2DWM Arachis hypogaea HOM05D005227 ORTHO05D006379 1.4e-32 142.9 96 74.0
COL.COLO4_36891 Corchorus olitorius HOM05D005227 ORTHO05D006379 1.4e-32 142.9 101 72.3
Duzib084G1247 Durio zibethinus HOM05D005227 ORTHO05D006379 1.4e-32 142.9 101 69.3
HanXRQChr01g0006241 Helianthus annuus HOM05D005227 ORTHO05D006379 1.4e-32 142.9 101 69.3
Medtr8g031320 Medicago truncatula HOM05D005227 ORTHO05D006379 1.4e-32 142.9 101 71.3
BcaC06g31592 Brassica carinata HOM05D005227 ORTHO05D006379 1.8e-32 142.5 101 69.3
BcaC06g31593 Brassica carinata HOM05D005227 ORTHO05D006379 1.8e-32 142.5 101 69.3
Cpa.g.c40334 Carica papaya HOM05D005227 ORTHO05D006379 1.8e-32 142.5 101 70.3
Eucgr.D00008 Eucalyptus grandis HOM05D005227 ORTHO05D006379 1.8e-32 142.5 96 69.8
Actinidia33652 Actinidia chinensis HOM05D005227 ORTHO05D006379 2.3e-32 142.1 101 72.3
AT5G44710 Arabidopsis thaliana HOM05D005227 ORTHO05D006379 2.3e-32 142.1 101 69.3
Lj3g0019179 Lotus japonicus HOM05D005227 ORTHO05D006379 2.3e-32 142.1 101 72.3
Cfa001143 Carpinus fangiana HOM05D005227 ORTHO05D006379 3.0e-32 141.7 100 71.0
A02p28550 Brassica napus HOM05D005227 ORTHO05D006379 4.0e-32 141.4 101 69.3
BraA02t07892Z Brassica rapa HOM05D005227 ORTHO05D006379 4.0e-32 141.4 101 69.3
Dinv26307 Davidia involucrata HOM05D005227 ORTHO05D006379 4.0e-32 141.4 101 69.3
TPR.G4382 Trifolium pratense HOM05D005227 ORTHO05D006379 4.0e-32 141.4 101 70.3
AL8G14830 Arabidopsis lyrata HOM05D005227 ORTHO05D006379 5.2e-32 141.0 101 68.3
SalBow2G2250 Salvia bowleyana HOM05D005227 ORTHO05D006379 5.2e-32 141.0 94 73.4
Nitab4.5_0001904g0080 Nicotiana tabacum HOM05D005227 ORTHO05D006379 6.8e-32 140.6 96 71.9
Haze_05241 Corylus avellana HOM05D005227 ORTHO05D006379 8.8e-32 140.2 100 71.0
THA.LOC104806226 Tarenaya hassleriana HOM05D005227 ORTHO05D006379 8.8e-32 140.2 101 68.3
HPP92_006340 Vanilla planifolia HOM05D005227 ORTHO05D006379 8.8e-32 140.2 97 75.3
EL10Ac4g09705 Beta vulgaris HOM05D005227 ORTHO05D006379 1.2e-31 139.8 100 73.0
BcaC06g34520 Brassica carinata HOM05D005227 ORTHO05D006379 1.5e-31 139.4 101 67.3
C07p27610 Brassica napus HOM05D005227 ORTHO05D006379 1.5e-31 139.4 101 67.3
BolC7t43294H Brassica oleracea HOM05D003109 ORTHO05D003578 1.5e-31 139.4 101 67.3
Glyma.03G084100 Glycine max HOM05D005227 ORTHO05D006379 1.5e-31 139.4 101 69.3
BcaB07g30501 Brassica carinata HOM05D005227 ORTHO05D006379 2.6e-31 138.7 101 67.3
arahy.Tifrunner.gnm1.ann1.BUN8CC Arachis hypogaea HOM05D005227 ORTHO05D006379 3.4e-31 138.3 96 71.9
BolC2t10561H Brassica oleracea HOM05D005227 ORTHO05D006379 3.4e-31 138.3 100 68.0
Carub.0001s3436 Capsella rubella HOM05D005227 ORTHO05D006379 3.4e-31 138.3 101 66.3
Lsat_1_v5_gn_5_150700 Lactuca sativa HOM05D005227 ORTHO05D006379 3.4e-31 138.3 97 72.2
ATR0752G166 Amborella trichopoda HOM05D005227 ORTHO05D006379 4.4e-31 137.9 97 71.1
BcaB07g30937 Brassica carinata HOM05D005227 ORTHO05D006379 4.4e-31 137.9 101 67.3
BraA06t27572Z Brassica rapa HOM05D005227 ORTHO05D006379 4.4e-31 137.9 101 67.3
CARHR178190 Cardamine hirsuta HOM05D005227 ORTHO05D006379 4.4e-31 137.9 101 66.3
Duzib205G0364 Durio zibethinus HOM05D005227 ORTHO05D006379 4.4e-31 137.9 101 66.3
Oeu041343.1 Olea europaea HOM05D005227 ORTHO05D006379 4.4e-31 137.9 94 73.4
Aqoxy1G01370 Aquilegia oxysepala HOM05D005227 ORTHO05D006379 5.7e-31 137.5 96 70.8
Potri.003G155000 Populus trichocarpa HOM05D005227 ORTHO05D006379 5.7e-31 137.5 99 72.7
Sp2g09520 Schrenkiella parvula HOM05D005227 ORTHO05D006379 5.7e-31 137.5 101 67.3
BcaC03g16691 Brassica carinata HOM05D005227 ORTHO05D006379 7.5e-31 137.1 100 68.0
Thhalv10001080m.g Eutrema salsugineum HOM05D005227 ORTHO05D006379 7.5e-31 137.1 101 66.3
Os05g0148300 Oryza sativa ssp. japonica HOM05D005227 ORTHO05D006379 7.5e-31 137.1 96 68.8
TPR.G1285 Trifolium pratense HOM05D005227 ORTHO05D006379 7.5e-31 137.1 101 65.3
Gohir.A11G165700 Gossypium hirsutum HOM05D005227 ORTHO05D006379 9.8e-31 136.7 101 67.3
TAR627G1207 Trochodendron aralioides HOM05D005227 ORTHO05D006379 1.3e-30 136.3 101 68.3
A09p21240 Brassica napus HOM05D005227 ORTHO05D006379 1.7e-30 136.0 101 66.3
BraA09t37729Z Brassica rapa HOM05D005227 ORTHO05D006379 1.7e-30 136.0 101 66.3
Gohir.D11G171900 Gossypium hirsutum HOM05D005227 ORTHO05D006379 1.7e-30 136.0 101 66.3
Gorai.007G184300 Gossypium raimondii HOM05D005227 ORTHO05D006379 1.7e-30 136.0 101 66.3
Sabra03G0112200 Salix brachista HOM05D005861 ORTHO05D007151 2.2e-30 135.6 96 69.8
Aa31LG9G8450 Aethionema arabicum HOM05D003109 ORTHO05D003578 2.8e-30 135.2 99 67.7
Carub.0008s0355 Capsella rubella HOM05D005227 ORTHO05D006379 3.7e-30 134.8 101 64.4
Rhsim13G0134700 Rhododendron simsii HOM05D005227 ORTHO05D006379 3.7e-30 134.8 99 71.7
RhsimUnG0177600 Rhododendron simsii HOM05D005227 ORTHO05D006379 3.7e-30 134.8 99 71.7
Zm00001eb354280 Zea mays HOM05D005227 ORTHO05D006379 3.7e-30 134.8 100 66.0
CDE05G2352 Ceratophyllum demersum HOM05D005227 ORTHO05D006379 4.8e-30 134.4 97 74.2
Cfa001148 Carpinus fangiana HOM05D005227 ORTHO05D006379 6.3e-30 134.0 100 67.0
Ciclev10010372m.g Citrus clementina HOM05D005227 ORTHO05D006379 6.3e-30 134.0 96 71.9
FAN25G2025 Fragaria x ananassa HOM05D005227 ORTHO05D006379 1.4e-29 132.9 91 80.2
ECA248G3549 Erigeron canadensis HOM05D005227 ORTHO05D006379 4.1e-29 131.3 101 67.3
AUR62042297 Chenopodium quinoa HOM05D005227 ORTHO05D006379 1.6e-28 129.4 100 60.0
PSO832G3358 Papaver somniferum HOM05D005227 ORTHO05D006379 3.5e-28 128.3 97 69.1
PSO198G0154 Papaver somniferum HOM05D005227 ORTHO05D006379 1.0e-27 126.7 97 68.0
PSO541G1361 Papaver somniferum HOM05D005227 ORTHO05D006379 1.7e-27 125.9 97 68.0
PSO541G0222 Papaver somniferum HOM05D005227 ORTHO05D006379 1.5e-26 122.9 97 66.0
PSO675G1867 Papaver somniferum HOM05D005227 ORTHO05D006379 1.5e-26 122.9 97 66.0
Ah.06g187780 Amaranthus hybridus HOM05D005227 ORTHO05D006379 2.4e-21 105.5 160 41.9
VMungo0859G0001 Vigna mungo HOM05D005227 ORTHO05D006379 4.1e-21 104.8 69 73.9
CSS0027348 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 7.0e-21 104.0 101 60.4
CSS0030749 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 7.0e-21 104.0 101 60.4
Dinv26329 Davidia involucrata HOM05D005227 ORTHO05D006379 1.6e-20 102.8 74 66.2
Psat4g202600 Pisum sativum HOM05D005227 ORTHO05D006379 1.6e-20 102.8 73 68.5
Psat0s277g0080 Pisum sativum HOM05D005227 ORTHO05D006379 2.0e-20 102.4 73 67.1
DCAR_003751 Daucus carota HOM05D005861 ORTHO05D007151 2.7e-20 102.1 72 65.3
Ca_23647_v3 Cicer arietinum L. HOM05D005227 ORTHO05D006379 1.0e-19 100.1 73 65.8
CDE02G3990 Ceratophyllum demersum HOM05D001323 ORTHO05D001223 2.3e-19 99.0 69 71.0
arahy.Tifrunner.gnm1.ann1.RE1YA1 Arachis hypogaea HOM05D005227 ORTHO05D006379 5.0e-19 97.8 68 69.1
AagrBONN_evm.TU.Sc2ySwM_228.4328 Anthoceros agrestis HOM05D005227 ORTHO05D006379 1.5e-18 96.3 89 55.1
Pp3c15_4210 Physcomitrium patens HOM05D005227 ORTHO05D006379 1.6e-17 92.8 84 56.0
AUR62035552 Chenopodium quinoa HOM05D005227 ORTHO05D006379 4.7e-17 91.3 73 61.6
AUR62040506 Chenopodium quinoa HOM05D005227 ORTHO05D006379 1.8e-16 89.4 66 59.1
BcaC04g21823 Brassica carinata HOM05D005227 ORTHO05D006379 9.8e-15 83.6 101 49.5
C02p45310 Brassica napus HOM05D005227 ORTHO05D006379 1.3e-14 83.2 69 58.0
Mapoly0090s0044 Marchantia polymorpha HOM05D005227 ORTHO05D006379 1.3e-14 83.2 83 51.8
HPP92_027864 Vanilla planifolia HOM05D005227 ORTHO05D006379 1.0e-11 73.6 54 66.7
Ciclev10006880m.g Citrus clementina HOM05D005227 ORTHO05D006379 1.3e-11 73.2 102 49.0
Lsat_1_v5_gn_4_103780 Lactuca sativa HOM05D005227 ORTHO05D006379 3.0e-11 72.0 63 55.6
MCO07G459 Micromonas commoda HOM05D005227 ORTHO05D006379 1.1e-10 70.1 85 51.8
C09p27040 Brassica napus HOM05D005227 ORTHO05D006379 2.2e-06 55.8 73 42.5
FAN25G2938 Fragaria x ananassa HOM05D000107 ORTHO05D002484 8.3e-06 53.9 29 100.0


User provided reference genes

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