Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G2024 Fragaria x ananassa HOM05D004572 ORTHO05D005425 3.7e-241 837.8 429 100.0
FAN16G2201 Fragaria x ananassa HOM05D004572 ORTHO05D005425 2.8e-236 821.6 429 98.4
FAN11G3304 Fragaria x ananassa HOM05D004572 ORTHO05D005425 8.1e-236 820.1 429 98.1
FvH4_3g22160 Fragaria vesca HOM05D004572 ORTHO05D005425 1.8e-235 818.9 429 97.9
RcHm_v2.0_Chr5g0038051 Rosa chinensis HOM05D004572 ORTHO05D005425 3.2e-216 755.0 431 89.8
Prupe.4G208800 Prunus persica HOM05D004572 ORTHO05D005425 4.5e-170 601.7 439 72.2
MD11G1222200 Malus domestica HOM05D004572 ORTHO05D005425 3.1e-163 578.9 446 69.3
MD03G1208000 Malus domestica HOM05D004572 ORTHO05D005425 1.5e-149 533.5 444 66.2
ClCG07G002440 Citrullus lanatus HOM05D004572 ORTHO05D005425 1.4e-118 430.6 483 54.0
CsaV3_3G030260 Cucumis sativus L. HOM05D004572 ORTHO05D005425 1.9e-115 420.2 484 52.3
TWI32G1304 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 5.1e-113 412.1 480 51.7
Duzib268G1853 Durio zibethinus HOM05D004572 ORTHO05D005425 1.9e-112 410.2 471 50.5
Gohir.A05G253900 Gossypium hirsutum HOM05D004572 ORTHO05D005425 1.9e-112 410.2 476 51.9
arahy.Tifrunner.gnm1.ann1.GWI8GZ Arachis hypogaea HOM05D004572 ORTHO05D005425 2.5e-112 409.8 487 52.6
arahy.Tifrunner.gnm1.ann1.Z20ZUZ Arachis hypogaea HOM05D004572 ORTHO05D005425 4.3e-112 409.1 496 52.0
MELO3C022741.2 Cucumis melo HOM05D004572 ORTHO05D005425 5.6e-112 408.7 484 52.1
Gohir.D05G255680 Gossypium hirsutum HOM05D004572 ORTHO05D005425 8.1e-111 404.8 477 50.9
Gorai.009G267300 Gossypium raimondii HOM05D004572 ORTHO05D005425 1.1e-110 404.4 477 50.9
CANSAT56G0747 Cannabis sativa HOM05D004572 ORTHO05D005425 1.4e-110 404.1 508 50.6
Sed0022149 Sechium edule HOM05D004572 ORTHO05D005425 3.1e-110 402.9 511 49.7
CANSAT56G1258 Cannabis sativa HOM05D004572 ORTHO05D005425 6.8e-110 401.7 510 50.6
Phvul.003G026500 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 5.8e-109 398.7 482 49.8
Dinv09440 Davidia involucrata HOM05D004572 ORTHO05D005425 1.3e-108 397.5 500 49.0
Hund14323 Selenicereus undatus HOM05D004572 ORTHO05D005425 3.8e-108 396.0 491 50.5
Thecc.04G269400 Theobroma cacao HOM05D004572 ORTHO05D005425 3.8e-108 396.0 480 49.6
VMungo0720G3103 Vigna mungo HOM05D004572 ORTHO05D005425 3.8e-108 396.0 482 49.6
THA.LOC104815806 Tarenaya hassleriana HOM05D004572 ORTHO05D005425 4.9e-108 395.6 483 50.1
Phvul.003G004000 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 1.6e-106 390.6 483 49.1
Psat6g099680 Pisum sativum HOM05D004572 ORTHO05D005425 1.0e-105 387.9 469 49.7
CARHR032960 Cardamine hirsuta HOM05D004572 ORTHO05D005425 1.3e-105 387.5 470 48.7
Ah.08g210120 Amaranthus hybridus HOM05D004572 ORTHO05D005425 2.3e-105 386.7 486 50.6
Manes.03G127100 Manihot esculenta HOM05D004572 ORTHO05D005425 3.9e-105 386.0 480 47.7
Manes.03G127200 Manihot esculenta HOM05D004572 ORTHO05D005425 1.5e-104 384.0 478 48.5
Duzib177G0040 Durio zibethinus HOM05D004572 ORTHO05D005425 2.5e-104 383.3 476 50.0
Glyma.07G197900 Glycine max HOM05D004572 ORTHO05D005425 3.3e-104 382.9 477 50.5
Lj2g0021533 Lotus japonicus HOM05D004572 ORTHO05D005425 4.3e-104 382.5 466 50.0
Rhsim01G0089200 Rhododendron simsii HOM05D004572 ORTHO05D005425 7.3e-104 381.7 490 49.4
Carub.0001s3171 Capsella rubella HOM05D004572 ORTHO05D005425 1.6e-103 380.6 479 47.6
arahy.Tifrunner.gnm1.ann1.41JFP3 Arachis hypogaea HOM05D004572 ORTHO05D005425 2.8e-103 379.8 477 51.6
BolC5t32530H Brassica oleracea HOM05D004572 ORTHO05D005425 1.1e-102 377.9 466 47.4
Nn5g27612 Nelumbo nucifera HOM05D004572 ORTHO05D005425 6.9e-102 375.2 530 45.5
BcaB03g13695 Brassica carinata HOM05D004572 ORTHO05D005425 9.0e-102 374.8 465 48.0
COL.COLO4_28616 Corchorus olitorius HOM05D004572 ORTHO05D005425 1.2e-101 374.4 477 48.6
BcaC05g27801 Brassica carinata HOM05D004572 ORTHO05D005425 2.6e-101 373.2 465 46.7
C05p37990 Brassica napus HOM05D004572 ORTHO05D005425 2.6e-101 373.2 465 46.7
BraA05t21310Z Brassica rapa HOM05D004572 ORTHO05D005425 7.6e-101 371.7 461 47.1
Sp1g28990 Schrenkiella parvula HOM05D004572 ORTHO05D005425 9.9e-101 371.3 482 47.7
AL1G47900 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 4.9e-100 369.0 477 46.8
Thhalv10007601m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 6.4e-100 368.6 469 47.5
Hma1.2p1_0127F.1_g059630 Hydrangea macrophylla HOM05D004572 ORTHO05D005425 8.4e-100 368.2 501 47.1
Sc07g0008270 Simmondsia chinensis HOM05D004572 ORTHO05D005425 8.4e-100 368.2 541 45.7
Sabra03G0071200 Salix brachista HOM05D004572 ORTHO05D005425 1.1e-99 367.9 460 47.6
AT1G33520 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 2.4e-99 366.7 477 46.3
Potri.001G129700 Populus trichocarpa HOM05D004572 ORTHO05D005425 1.6e-98 364.0 475 44.4
TAR629G0838 Trochodendron aralioides HOM05D004572 ORTHO05D005425 2.1e-98 363.6 511 45.4
Lalb_Chr20g0109201 Lupinus albus HOM05D004572 ORTHO05D005425 7.8e-98 361.7 451 50.6
QL93p0146_0040 Quercus lobata HOM05D004572 ORTHO05D005425 7.8e-98 361.7 445 50.6
Nitab4.5_0000907g0020 Nicotiana tabacum HOM05D004572 ORTHO05D005425 1.0e-97 361.3 490 47.6
Aa31LG6G7980 Aethionema arabicum HOM05D004572 ORTHO05D005425 1.3e-97 360.9 470 47.2
Nitab4.5_0001131g0030 Nicotiana tabacum HOM05D004572 ORTHO05D005425 1.7e-97 360.5 491 47.9
Peaxi162Scf00445g00102 Petunia axillaris HOM05D004572 ORTHO05D005425 1.7e-97 360.5 485 47.8
vmacro05137 Vaccinium macrocarpon HOM05D004572 ORTHO05D005425 5.1e-97 359.0 513 44.6
Haze_21257 Corylus avellana HOM05D004572 ORTHO05D005425 8.7e-97 358.2 434 50.0
Potri.003G104200 Populus trichocarpa HOM05D004572 ORTHO05D005425 1.5e-96 357.5 482 46.1
Cc04_g13510 Coffea canephora HOM05D004572 ORTHO05D005425 1.9e-96 357.1 499 46.3
TPR.G29795 Trifolium pratense HOM05D004572 ORTHO05D005425 5.6e-96 355.5 477 47.0
QL06p018920 Quercus lobata HOM05D004572 ORTHO05D005425 7.3e-96 355.1 449 49.7
PGSC0003DMG400029573 Solanum tuberosum HOM05D004572 ORTHO05D005425 2.1e-95 353.6 495 45.9
Cfa012912 Carpinus fangiana HOM05D004572 ORTHO05D005425 3.6e-95 352.8 440 51.4
Cc04_g13460 Coffea canephora HOM05D004572 ORTHO05D005425 1.8e-94 350.5 499 45.5
Oeu028098.1 Olea europaea HOM05D004572 ORTHO05D005425 1.8e-94 350.5 477 47.0
MSTRG.11833 Avicennia marina HOM05D004572 ORTHO05D005425 2.4e-94 350.1 476 47.9
Sopen08g023180 Solanum pennellii HOM05D004572 ORTHO05D005425 5.3e-94 349.0 496 46.0
QL12p001966 Quercus lobata HOM05D004572 ORTHO05D005425 9.0e-94 348.2 418 50.2
Solyc08g074570.1 Solanum lycopersicum HOM05D004572 ORTHO05D005425 9.0e-94 348.2 496 46.2
Glyma.20G002200 Glycine max HOM05D004572 ORTHO05D005425 7.6e-93 345.1 401 52.4
AUR62019030 Chenopodium quinoa HOM05D004572 ORTHO05D005425 9.9e-93 344.7 484 46.5
AUR62008525 Chenopodium quinoa HOM05D004572 ORTHO05D005425 1.7e-92 344.0 480 46.2
DCAR_023418 Daucus carota HOM05D004572 ORTHO05D005425 2.2e-92 343.6 472 46.2
CiPaw.11G104400 Carya illinoinensis HOM05D004572 ORTHO05D005425 6.4e-92 342.0 438 49.5
DCAR_017646 Daucus carota HOM05D004572 ORTHO05D005425 1.1e-91 341.3 484 46.5
PGR042G2393 Punica granatum HOM05D004572 ORTHO05D005425 4.2e-91 339.3 433 47.8
CSS0029181 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 1.3e-89 334.3 524 42.9
CSS0036523 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 1.3e-89 334.3 524 42.9
Aqoxy5G04375 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 5.6e-88 328.9 529 41.6
Ca_12422_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 1.3e-87 327.8 396 49.2
Ca_12425_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 1.3e-87 327.8 396 49.2
HanXRQChr04g0098951 Helianthus annuus HOM05D004572 ORTHO05D005425 1.3e-87 327.8 438 46.8
Medtr1g038340 Medicago truncatula HOM05D004572 ORTHO05D005425 1.6e-87 327.4 394 49.2
SalBow4G0115 Salvia bowleyana HOM05D004572 ORTHO05D005425 1.6e-87 327.4 478 44.4
SGA_v2.0_scaffold27G11714 Striga asiatica HOM05D004572 ORTHO05D005425 4.8e-87 325.9 451 45.7
Eucgr.E01208 Eucalyptus grandis HOM05D004572 ORTHO05D005425 6.9e-86 322.0 482 44.4
PSO541G6108 Papaver somniferum HOM05D004572 ORTHO05D005425 2.6e-85 320.1 520 40.0
Migut.A00508 Erythranthe guttata HOM05D004572 ORTHO05D005425 1.0e-84 318.2 466 45.3
Cfa012902 Carpinus fangiana HOM05D004572 ORTHO05D005425 1.3e-84 317.8 402 50.0
PSO675G6986 Papaver somniferum HOM05D004572 ORTHO05D005425 1.7e-84 317.4 520 39.4
AL7G28150 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 2.9e-84 316.6 433 45.5
unitig_748.g8160 Utricularia gibba HOM05D004572 ORTHO05D005425 1.1e-83 314.7 464 44.4
ECA248G3611 Erigeron canadensis HOM05D004572 ORTHO05D005425 4.2e-83 312.8 439 45.6
ECA233G3653 Erigeron canadensis HOM05D004572 ORTHO05D005425 3.5e-82 309.7 439 46.7
CAN.G195.29 Capsicum annuum HOM05D004572 ORTHO05D005425 6.0e-82 308.9 362 50.0
MBI12_g26901_MAGBIO Magnolia biondii HOM05D004572 ORTHO05D005425 1.3e-81 307.8 459 42.9
Carub.0007s1601 Capsella rubella HOM05D004572 ORTHO05D005425 2.3e-81 307.0 442 43.9
Sabra01G0100000 Salix brachista HOM05D004572 ORTHO05D005425 5.1e-81 305.8 365 48.2
Manes.15G074001 Manihot esculenta HOM05D004572 ORTHO05D005425 6.2e-79 298.9 434 43.5
Lj8P410T5 Lonicera japonica HOM05D004572 ORTHO05D005425 1.8e-78 297.4 340 51.2
AT4G25020 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 5.3e-78 295.8 431 44.1
Atru.chr6.2109 Acer truncatum HOM05D004572 ORTHO05D005425 5.0e-76 289.3 441 42.2
HPP92_014435 Vanilla planifolia HOM05D004572 ORTHO05D005425 5.0e-68 262.7 466 40.8
VMungo0251G2350 Vigna mungo HOM05D004572 ORTHO05D005425 6.5e-68 262.3 309 49.2
ATR0579G060 Amborella trichopoda HOM05D004572 ORTHO05D005425 1.4e-67 261.2 557 35.4
Cpa.g.sc21.98 Carica papaya HOM05D004572 ORTHO05D005425 6.7e-65 252.3 393 43.8
Thhalv10027298m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 1.5e-64 251.1 402 43.0
Ciclev10001464m.g Citrus clementina HOM05D004572 ORTHO05D005425 2.5e-64 250.4 441 38.8
Os03g0253500 Oryza sativa ssp. japonica HOM05D004572 ORTHO05D005425 1.7e-63 247.7 453 38.2
Oeu048006.1 Olea europaea HOM05D004572 ORTHO05D005425 8.2e-63 245.4 378 42.3
CARHR232410 Cardamine hirsuta HOM05D004572 ORTHO05D005425 7.7e-61 238.8 332 42.8
SHI08932 Sapria himalayana HOM05D004572 ORTHO05D005425 2.5e-59 233.8 452 38.1
CDE02G0510 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 1.0e-57 228.4 341 42.5
Zm00001eb398470 Zea mays HOM05D004572 ORTHO05D005425 3.0e-57 226.9 418 38.0
SMO347G0031 Selaginella moellendorffii HOM05D004572 ORTHO05D005425 6.1e-50 202.6 388 37.6
Cfa021184 Carpinus fangiana HOM05D004572 ORTHO05D005425 9.1e-46 188.7 206 55.3
SEGI_34794 Sequoiadendron giganteum HOM05D004572 ORTHO05D005425 1.2e-42 178.3 732 26.6
TWI34G1093 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 1.4e-41 174.9 212 52.4
Prupe.4G208700 Prunus persica HOM05D004572 ORTHO05D005425 4.0e-41 173.3 207 53.6
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 5.4e-38 162.9 209 46.9
PSO017G4650 Papaver somniferum HOM05D004572 ORTHO05D005425 2.7e-37 160.6 330 35.2
Aa31LG9G8960 Aethionema arabicum HOM05D000113 ORTHO05D002571 4.5e-37 159.8 379 35.1
Lsat_1_v5_gn_6_80001 Lactuca sativa HOM05D004572 ORTHO05D005425 9.4e-35 152.1 214 44.9
RcHm_v2.0_Chr5g0037991 Rosa chinensis HOM05D004572 ORTHO05D005425 4.0e-33 146.7 212 44.8
MCO10G255 Micromonas commoda HOM05D004572 ORTHO05D005425 1.4e-30 138.3 350 30.9
Mapoly0027s0115 Marchantia polymorpha HOM05D004572 ORTHO05D005425 2.3e-28 131.0 672 25.3
Aqoxy7G00153 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 1.7e-23 114.8 214 35.5
FAN16G0157 Fragaria x ananassa HOM05D004572 ORTHO05D005425 5.4e-22 109.8 204 37.3
CBR_g50444 Chara braunii HOM05D004572 ORTHO05D005425 2.7e-21 107.5 599 23.9
CBR_g54973 Chara braunii HOM05D004572 ORTHO05D005425 1.3e-20 105.1 606 23.1
HanXRQChr03g0083281 Helianthus annuus HOM05D004572 ORTHO05D005425 2.3e-20 104.4 204 35.8
PSO170G2332 Papaver somniferum HOM05D004572 ORTHO05D005425 2.1e-18 97.8 142 38.0
Glyma.09G283500 Glycine max HOM05D004572 ORTHO05D005425 2.8e-18 97.4 211 35.5
Sabra05G0101600 Salix brachista HOM05D004572 ORTHO05D005425 1.0e-17 95.5 110 42.7
FvH4_3g22140 Fragaria vesca HOM05D004572 ORTHO05D005425 1.4e-17 95.1 176 40.3
SalBow7G4536 Salvia bowleyana HOM05D000482 ORTHO05D000349 4.0e-17 93.6 114 45.6
PRCOL_00000575 Prasinoderma coloniale HOM05D004572 ORTHO05D005425 2.0e-16 91.3 400 25.5
AagrBONN_evm.TU.Sc2ySwM_344.5065 Anthoceros agrestis HOM05D004572 ORTHO05D005425 4.4e-16 90.1 169 39.1
Sed0007980 Sechium edule HOM05D004572 ORTHO05D005425 2.2e-15 87.8 90 51.1
CDE11G0183 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 1.6e-13 81.6 213 29.6
Nn3g17595 Nelumbo nucifera HOM05D004572 ORTHO05D005425 2.7e-13 80.9 138 42.8
Cre06.g303500 Chlamydomonas reinhardtii HOM05D004572 ORTHO05D005425 6.0e-13 79.7 561 21.6
Pp3c1_630 Physcomitrium patens HOM05D004572 ORTHO05D005425 6.0e-13 79.7 200 32.5
CDE04G1584 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 7.8e-13 79.3 164 32.9
TWI74G0109 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 1.5e-11 75.1 225 30.7
COL.COLO4_35853 Corchorus olitorius HOM05D004572 ORTHO05D005425 3.1e-09 67.4 89 48.3
Cc11_g00690 Coffea canephora HOM05D004572 ORTHO05D005425 2.6e-08 64.3 125 42.4
CBR_g2939 Chara braunii HOM05D007240 ORTHO05D003552 4.4e-08 63.5 262 26.0
FAN11G0972 Fragaria x ananassa HOM05D004572 ORTHO05D005425 8.3e-07 59.3 145 35.9
AagrBONN_evm.TU.Sc2ySwM_344.715 Anthoceros agrestis HOM05D004572 ORTHO05D005425 3.2e-06 57.4 60 46.7
Cc02_g26180 Coffea canephora HOM05D004572 ORTHO05D005425 3.2e-06 57.4 127 39.4
Sabra05G0101700 Salix brachista HOM05D004572 ORTHO05D005425 5.4e-06 56.6 47 51.1


User provided reference genes

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