Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G2008 Fragaria x ananassa HOM05D000071 ORTHO05D014638 9.4e-56 219.9 109 100.0
FAN16G2699 Fragaria x ananassa HOM05D000071 ORTHO05D014638 5.9e-42 174.1 93 90.3
FAN11G2613 Fragaria x ananassa HOM05D000005 ORTHO05D014638 4.0e-38 161.4 78 100.0
FAN25G3618 Fragaria x ananassa HOM05D000071 ORTHO05D014638 5.3e-35 151.0 106 75.5
FAN25G0998 Fragaria x ananassa HOM05D000005 ORTHO05D000012 9.1e-35 150.2 106 73.6
FAN16G2219 Fragaria x ananassa HOM05D000071 ORTHO05D014638 8.5e-33 143.7 106 70.8
FAN17G0833 Fragaria x ananassa HOM05D000005 ORTHO05D014638 1.1e-32 143.3 106 70.8
FvH4_3g44580 Fragaria vesca HOM05D000005 ORTHO05D000012 2.8e-28 128.6 99 68.7
FAN16G0514 Fragaria x ananassa HOM05D000005 ORTHO05D000012 8.3e-28 127.1 99 67.7
FvH4_3g44391 Fragaria vesca HOM05D000005 ORTHO05D000012 4.9e-20 101.3 98 52.0
FAN11G2692 Fragaria x ananassa HOM05D000005 ORTHO05D000012 4.9e-20 101.3 140 42.9
FAN25G0251 Fragaria x ananassa HOM05D000005 ORTHO05D000012 1.8e-19 99.4 98 51.0
FvH4_3g45530 Fragaria vesca HOM05D000005 ORTHO05D014638 2.4e-19 99.0 106 54.7
FAN17G2722 Fragaria x ananassa HOM05D000005 ORTHO05D000012 7.0e-19 97.4 126 50.8
FAN16G2560 Fragaria x ananassa HOM05D000005 ORTHO05D014638 1.5e-16 89.7 53 84.9
FAN17G0104 Fragaria x ananassa HOM05D000005 ORTHO05D000012 3.0e-14 82.0 150 40.7
RcHm_v2.0_Chr6g0258111 Rosa chinensis HOM05D000005 ORTHO05D020745 1.7e-12 76.3 103 44.7
CiPaw.15G173800 Carya illinoinensis HOM05D000005 ORTHO05D000012 6.4e-12 74.3 101 44.6
FAN26G1409 Fragaria x ananassa HOM05D000005 ORTHO05D000012 8.3e-12 73.9 128 37.5
FAN15G1425 Fragaria x ananassa HOM05D000005 ORTHO05D000012 7.0e-11 70.9 128 39.8
FvH4_4g13411 Fragaria vesca HOM05D000005 ORTHO05D000012 9.2e-11 70.5 128 38.3
FAN08G1537 Fragaria x ananassa HOM05D000005 ORTHO05D000012 1.6e-10 69.7 129 39.5
Prupe.8G111500 Prunus persica HOM05D000005 ORTHO05D000012 4.6e-10 68.2 128 37.5
FvH4_3g10020 Fragaria vesca HOM05D000005 ORTHO05D000012 7.8e-10 67.4 128 35.9
FAN26G0257 Fragaria x ananassa HOM05D000005 ORTHO05D000012 1.0e-09 67.0 128 36.7
FAN26G1159 Fragaria x ananassa HOM05D000005 ORTHO05D000012 1.3e-09 66.6 129 37.2
RcHm_v2.0_Chr7g0217461 Rosa chinensis HOM05D000005 ORTHO05D000012 1.3e-09 66.6 94 40.4
FAN12G1748 Fragaria x ananassa HOM05D000005 ORTHO05D000012 1.7e-09 66.2 125 37.6
Prupe.2G066600 Prunus persica HOM05D000005 ORTHO05D000012 1.7e-09 66.2 110 39.1
RcHm_v2.0_Chr6g0265631 Rosa chinensis HOM05D000005 ORTHO05D000012 1.7e-09 66.2 130 33.8
FAN19G1706 Fragaria x ananassa HOM05D000005 ORTHO05D000012 2.3e-09 65.9 129 37.2
Prupe.8G112100 Prunus persica HOM05D000005 ORTHO05D000012 2.3e-09 65.9 128 35.9
FAN08G0595 Fragaria x ananassa HOM05D000005 ORTHO05D000012 3.0e-09 65.5 126 37.3
FAN18G1764 Fragaria x ananassa HOM05D000005 ORTHO05D000012 3.9e-09 65.1 126 36.5
RcHm_v2.0_Chr7g0216111 Rosa chinensis HOM05D000005 ORTHO05D010497 3.9e-09 65.1 128 37.5
Eucgr.C03469 Eucalyptus grandis HOM05D000005 ORTHO05D000012 6.6e-09 64.3 121 35.5
Eucgr.L01328 Eucalyptus grandis HOM05D000005 ORTHO05D000012 6.6e-09 64.3 121 35.5
Prupe.8G111900 Prunus persica HOM05D000005 ORTHO05D010497 6.6e-09 64.3 130 36.9
Eucgr.C03467 Eucalyptus grandis HOM05D000005 ORTHO05D000012 8.6e-09 63.9 121 36.4
HanXRQChr16g0521501 Helianthus annuus HOM05D000005 ORTHO05D000012 8.6e-09 63.9 103 36.9
Prupe.5G074600 Prunus persica HOM05D000005 ORTHO05D000012 1.1e-08 63.5 104 35.6
QL01p032502 Quercus lobata HOM05D000005 ORTHO05D000012 1.1e-08 63.5 129 35.7
FvH4_2g14040 Fragaria vesca HOM05D000005 ORTHO05D000012 1.9e-08 62.8 104 36.5
FAN15G0727 Fragaria x ananassa HOM05D000005 ORTHO05D000012 1.9e-08 62.8 104 36.5
FAN26G1775 Fragaria x ananassa HOM05D000005 ORTHO05D000012 1.9e-08 62.8 129 38.0
FAN26G1949 Fragaria x ananassa HOM05D000005 ORTHO05D000012 1.9e-08 62.8 129 38.0
Prupe.8G111200 Prunus persica HOM05D000005 ORTHO05D000012 1.9e-08 62.8 128 35.9
RcHm_v2.0_Chr4g0411691 Rosa chinensis HOM05D000005 ORTHO05D000012 1.9e-08 62.8 128 35.2
FvH4_3g44370 Fragaria vesca HOM05D000005 ORTHO05D000012 2.5e-08 62.4 105 35.2
FvH4_3g44390 Fragaria vesca HOM05D000005 ORTHO05D000012 2.5e-08 62.4 106 36.8
FAN27G1418 Fragaria x ananassa HOM05D000005 ORTHO05D000012 2.5e-08 62.4 122 35.2
MD00G1125900 Malus domestica HOM05D000005 ORTHO05D000012 3.3e-08 62.0 121 33.1
PGR102G0350 Punica granatum HOM05D000005 ORTHO05D007073 3.3e-08 62.0 102 38.2
RcHm_v2.0_Chr7g0225191 Rosa chinensis HOM05D000005 ORTHO05D000012 3.3e-08 62.0 116 37.9
GSVIVG01025958001 Vitis vinifera HOM05D000005 ORTHO05D011281 3.3e-08 62.0 105 37.1
FAN11G1451 Fragaria x ananassa HOM05D000005 ORTHO05D000012 4.3e-08 61.6 106 35.8
HanXRQChr16g0522521 Helianthus annuus HOM05D000005 ORTHO05D000012 7.3e-08 60.8 102 36.3
Eucgr.E02177 Eucalyptus grandis HOM05D000005 ORTHO05D000012 9.5e-08 60.5 99 38.4
Prupe.8G108500 Prunus persica HOM05D000005 ORTHO05D000012 9.5e-08 60.5 116 36.2
Prupe.8G108800 Prunus persica HOM05D000005 ORTHO05D000012 9.5e-08 60.5 116 36.2
FAN13G1039 Fragaria x ananassa HOM05D000005 ORTHO05D000012 1.6e-07 59.7 129 34.9
HanXRQChr14g0457371 Helianthus annuus HOM05D000005 ORTHO05D014638 1.6e-07 59.7 103 37.9
QL03p006134 Quercus lobata HOM05D000005 ORTHO05D000012 1.6e-07 59.7 129 34.9
RcHm_v2.0_Chr6g0276061 Rosa chinensis HOM05D000005 ORTHO05D000012 1.6e-07 59.7 104 36.5
BcaC04g21188 Brassica carinata HOM05D000005 ORTHO05D012037 2.1e-07 59.3 126 32.5
C09p34460 Brassica napus HOM05D000005 ORTHO05D012037 2.1e-07 59.3 126 32.5
CiPaw.14G132600 Carya illinoinensis HOM05D000005 ORTHO05D000012 2.1e-07 59.3 90 36.7
HanXRQChr04g0098511 Helianthus annuus HOM05D000005 ORTHO05D000012 2.1e-07 59.3 103 36.9
MD02G1051200 Malus domestica HOM05D000005 ORTHO05D000012 2.1e-07 59.3 124 29.8
RcHm_v2.0_Chr4g0387981 Rosa chinensis HOM05D000005 ORTHO05D010497 2.1e-07 59.3 120 34.2
CiPaw.15G160200 Carya illinoinensis HOM05D000005 ORTHO05D000012 2.8e-07 58.9 127 36.2
FvH4_3g08681 Fragaria vesca HOM05D000005 ORTHO05D000012 2.8e-07 58.9 95 38.9
QL03p006115 Quercus lobata HOM05D000005 ORTHO05D000012 2.8e-07 58.9 129 33.3
A09p27100 Brassica napus HOM05D000005 ORTHO05D012037 3.6e-07 58.5 126 32.5
Eucgr.H03750 Eucalyptus grandis HOM05D000005 ORTHO05D000012 3.6e-07 58.5 93 32.3
MD10G1072300 Malus domestica HOM05D000005 ORTHO05D010497 3.6e-07 58.5 91 41.8
QL06p019572 Quercus lobata HOM05D000005 ORTHO05D000012 3.6e-07 58.5 113 37.2
BcaB05g22226 Brassica carinata HOM05D000005 ORTHO05D000012 4.7e-07 58.2 114 34.2
Eucgr.H02205 Eucalyptus grandis HOM05D009541 ORTHO05D011273 4.7e-07 58.2 90 40.0
Prupe.8G109200 Prunus persica HOM05D000005 ORTHO05D000012 4.7e-07 58.2 116 35.3
BcaB01g01704 Brassica carinata HOM05D000005 ORTHO05D012037 6.2e-07 57.8 126 32.5
CiPaw.15G119700 Carya illinoinensis HOM05D000005 ORTHO05D000012 6.2e-07 57.8 88 38.6
Ca_27388_v3 Cicer arietinum L. HOM05D000005 ORTHO05D000012 6.2e-07 57.8 97 32.0
HanXRQChr04g0098761 Helianthus annuus HOM05D000005 ORTHO05D000012 6.2e-07 57.8 102 37.3
HanXRQChr10g0317141 Helianthus annuus HOM05D000005 ORTHO05D000012 6.2e-07 57.8 102 36.3
MD02G1115200 Malus domestica HOM05D000005 ORTHO05D010497 6.2e-07 57.8 117 34.2
RcHm_v2.0_Chr4g0413891 Rosa chinensis HOM05D000005 ORTHO05D000012 6.2e-07 57.8 128 34.4
Eucgr.E03292 Eucalyptus grandis HOM05D000005 ORTHO05D000012 8.0e-07 57.4 112 39.3
Eucgr.E03529 Eucalyptus grandis HOM05D010218 ORTHO05D007072 8.0e-07 57.4 86 36.0
Lj2g0012327 Lotus japonicus HOM05D000005 ORTHO05D000012 8.0e-07 57.4 116 28.4
QL05p074258 Quercus lobata HOM05D000005 ORTHO05D000012 8.0e-07 57.4 83 41.0
RcHm_v2.0_Chr6g0260811 Rosa chinensis HOM05D000005 ORTHO05D000012 8.0e-07 57.4 128 36.7
BcaC01g04610 Brassica carinata HOM05D000005 ORTHO05D012037 1.1e-06 57.0 107 33.6
A09p27130 Brassica napus HOM05D000005 ORTHO05D012037 1.1e-06 57.0 126 32.5
C03p35730 Brassica napus HOM05D000005 ORTHO05D012037 1.1e-06 57.0 107 33.6
FAN13G3013 Fragaria x ananassa HOM05D000005 ORTHO05D000012 1.1e-06 57.0 126 34.9
FAN15G2039 Fragaria x ananassa HOM05D000005 ORTHO05D000012 1.1e-06 57.0 132 31.8
arahy.Tifrunner.gnm1.ann1.A8JJ1G Arachis hypogaea HOM05D000005 ORTHO05D000068 1.4e-06 56.6 104 35.6
arahy.Tifrunner.gnm1.ann1.BW2M8B Arachis hypogaea HOM05D000005 ORTHO05D009032 1.4e-06 56.6 104 35.6
Eucgr.E02536 Eucalyptus grandis HOM05D000005 ORTHO05D000012 1.4e-06 56.6 116 33.6
Eucgr.J01301 Eucalyptus grandis HOM05D000005 ORTHO05D007073 1.4e-06 56.6 91 38.5
MD17G1274300 Malus domestica HOM05D000005 ORTHO05D000012 1.4e-06 56.6 79 41.8
Prupe.1G161300 Prunus persica HOM05D000005 ORTHO05D000012 1.4e-06 56.6 129 32.6
RcHm_v2.0_Chr4g0411751 Rosa chinensis HOM05D000005 ORTHO05D000012 1.4e-06 56.6 128 35.2
RcHm_v2.0_Chr5g0026421 Rosa chinensis HOM05D000005 ORTHO05D000012 1.4e-06 56.6 108 38.9
Eucgr.H01908 Eucalyptus grandis HOM05D000005 ORTHO05D000012 1.8e-06 56.2 71 47.9
FAN10G4321 Fragaria x ananassa HOM05D000005 ORTHO05D000012 1.8e-06 56.2 107 38.3
Prupe.2G055200 Prunus persica HOM05D000005 ORTHO05D000012 1.8e-06 56.2 129 37.2
Prupe.6G160100 Prunus persica HOM05D000005 ORTHO05D000012 1.8e-06 56.2 125 29.6
RcHm_v2.0_Chr6g0260731 Rosa chinensis HOM05D000005 ORTHO05D000012 1.8e-06 56.2 103 39.8
AL8G11910 Arabidopsis lyrata HOM05D000005 ORTHO05D000449 2.3e-06 55.8 111 35.1
BcaB01g01707 Brassica carinata HOM05D000005 ORTHO05D012037 2.3e-06 55.8 126 31.0
BcaB05g23777 Brassica carinata HOM05D000431 ORTHO05D012037 2.3e-06 55.8 126 33.3
CARHR254260 Cardamine hirsuta HOM05D000005 ORTHO05D012037 2.3e-06 55.8 130 30.8
ECA238G2984 Erigeron canadensis HOM05D000005 ORTHO05D000012 2.3e-06 55.8 108 33.3
Eucgr.J01303 Eucalyptus grandis HOM05D000005 ORTHO05D000012 2.3e-06 55.8 91 34.1
FAN25G0053 Fragaria x ananassa HOM05D000005 ORTHO05D000012 2.3e-06 55.8 101 33.7
MD05G1018900 Malus domestica HOM05D000005 ORTHO05D000012 2.3e-06 55.8 94 36.2
Medtr6g072460 Medicago truncatula HOM05D000005 ORTHO05D000012 2.3e-06 55.8 115 29.6
QL01p032908 Quercus lobata HOM05D000005 ORTHO05D000012 2.3e-06 55.8 130 32.3
Sopen11g005850 Solanum pennellii HOM05D000005 ORTHO05D000012 2.3e-06 55.8 86 38.4
CSS0034467 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 3.1e-06 55.5 101 33.7
CiPaw.15G167800 Carya illinoinensis HOM05D000005 ORTHO05D000012 3.1e-06 55.5 121 33.9
Eucgr.C03460 Eucalyptus grandis HOM05D000005 ORTHO05D000012 3.1e-06 55.5 113 36.3
Eucgr.E01836 Eucalyptus grandis HOM05D000005 ORTHO05D000012 3.1e-06 55.5 91 37.4
Eucgr.E03501 Eucalyptus grandis HOM05D000005 ORTHO05D007072 3.1e-06 55.5 88 34.1
Eucgr.H01757 Eucalyptus grandis HOM05D009541 ORTHO05D011273 3.1e-06 55.5 90 40.0
Eucgr.H01766 Eucalyptus grandis HOM05D000005 ORTHO05D011273 3.1e-06 55.5 100 36.0
FvH4_5g07310 Fragaria vesca HOM05D000005 ORTHO05D000012 3.1e-06 55.5 126 34.1
HanXRQChr04g0098541 Helianthus annuus HOM05D000005 ORTHO05D000012 3.1e-06 55.5 102 35.3
HanXRQChr04g0098911 Helianthus annuus HOM05D000005 ORTHO05D000012 3.1e-06 55.5 102 37.3
MD17G1275000 Malus domestica HOM05D000005 ORTHO05D000012 3.1e-06 55.5 76 42.1
PGR142G4263 Punica granatum HOM05D000005 ORTHO05D000012 3.1e-06 55.5 92 35.9
QL04p036137 Quercus lobata HOM05D000005 ORTHO05D000012 3.1e-06 55.5 118 33.1
QL04p036609 Quercus lobata HOM05D000005 ORTHO05D000012 3.1e-06 55.5 118 33.9
QL04p051634 Quercus lobata HOM05D000005 ORTHO05D000012 3.1e-06 55.5 112 34.8
Solyc11g011090.1 Solanum lycopersicum HOM05D000005 ORTHO05D000012 3.1e-06 55.5 86 38.4
Eucgr.C01700 Eucalyptus grandis HOM05D000005 ORTHO05D007072 4.0e-06 55.1 108 33.3
Eucgr.J01295 Eucalyptus grandis HOM05D000005 ORTHO05D000012 4.0e-06 55.1 91 36.3
Eucgr.L01097 Eucalyptus grandis HOM05D000005 ORTHO05D007072 4.0e-06 55.1 93 37.6
HanXRQChr08g0210051 Helianthus annuus HOM05D000005 ORTHO05D000012 4.0e-06 55.1 129 33.3
MD02G1031800 Malus domestica HOM05D000005 ORTHO05D000012 4.0e-06 55.1 134 29.1
MD02G1038700 Malus domestica HOM05D000005 ORTHO05D000012 4.0e-06 55.1 132 28.0
Sopen11g006130 Solanum pennellii HOM05D000005 ORTHO05D000012 4.0e-06 55.1 89 37.1
GSVIVG01026094001 Vitis vinifera HOM05D000005 ORTHO05D000012 4.0e-06 55.1 119 35.3
GSVIVG01026099001 Vitis vinifera HOM05D000005 ORTHO05D000012 4.0e-06 55.1 126 34.1
arahy.Tifrunner.gnm1.ann1.N2E3I0 Arachis hypogaea HOM05D000005 ORTHO05D000012 5.2e-06 54.7 105 34.3
MD02G1264800 Malus domestica HOM05D000005 ORTHO05D000012 5.2e-06 54.7 81 35.8
QL10p024950 Quercus lobata HOM05D000005 ORTHO05D000012 5.2e-06 54.7 79 40.5
QL93p2022_0113 Quercus lobata HOM05D000005 ORTHO05D000012 5.2e-06 54.7 79 40.5
RcHm_v2.0_Chr6g0261281 Rosa chinensis HOM05D000005 ORTHO05D010497 5.2e-06 54.7 114 36.8
TPR.G30783 Trifolium pratense HOM05D000005 ORTHO05D000012 5.2e-06 54.7 88 35.2
AL6G46820 Arabidopsis lyrata HOM05D000005 ORTHO05D012037 6.8e-06 54.3 114 32.5
A09p26890 Brassica napus HOM05D000005 ORTHO05D012037 6.8e-06 54.3 88 34.1
MD02G1040600 Malus domestica HOM05D000005 ORTHO05D000012 6.8e-06 54.3 77 36.4
RcHm_v2.0_Chr4g0388021 Rosa chinensis HOM05D000005 ORTHO05D000012 6.8e-06 54.3 120 33.3
CiPaw.15G157400 Carya illinoinensis HOM05D000005 ORTHO05D000012 8.9e-06 53.9 104 37.5
HanXRQChr06g0184071 Helianthus annuus HOM05D000005 ORTHO05D000012 8.9e-06 53.9 95 35.8
HanXRQChr16g0521551 Helianthus annuus HOM05D000005 ORTHO05D000012 8.9e-06 53.9 103 32.0
MD02G1053100 Malus domestica HOM05D000005 ORTHO05D000012 8.9e-06 53.9 124 28.2
MD02G1054400 Malus domestica HOM05D000005 ORTHO05D000012 8.9e-06 53.9 124 28.2
PGR142G0924 Punica granatum HOM05D000005 ORTHO05D000012 8.9e-06 53.9 88 37.5
QL04p036816 Quercus lobata HOM05D000005 ORTHO05D013344 8.9e-06 53.9 95 35.8


User provided reference genes

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