Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G1956 Fragaria x ananassa HOM05D006242 ORTHO05D007936 2.5e-164 582.0 295 100.0
FvH4_3g12650 Fragaria vesca HOM05D006242 ORTHO05D007936 2.9e-160 568.5 295 97.3
FAN25G2599 Fragaria x ananassa HOM05D006242 ORTHO05D007936 5.5e-159 564.3 295 96.6
RcHm_v2.0_Chr5g0020621 Rosa chinensis HOM05D006242 ORTHO05D007936 7.7e-153 543.9 295 93.6
FAN16G0457 Fragaria x ananassa HOM05D006242 ORTHO05D007936 1.0e-152 543.5 322 88.2
Prupe.4G115300 Prunus persica HOM05D006242 ORTHO05D007936 5.5e-143 511.1 296 86.8
MD10G1229500 Malus domestica HOM05D006242 ORTHO05D007936 5.7e-140 501.1 296 85.1
Dinv10532 Davidia involucrata HOM05D006242 ORTHO05D007936 3.5e-129 465.3 290 77.9
Haze_06141 Corylus avellana HOM05D006242 ORTHO05D007936 2.5e-127 459.1 296 76.7
Cfa000677 Carpinus fangiana HOM05D006242 ORTHO05D007936 7.2e-127 457.6 296 76.4
GSVIVG01012122001 Vitis vinifera HOM05D006242 ORTHO05D007936 2.1e-126 456.1 289 78.2
Atru.chr10.429 Acer truncatum HOM05D006242 ORTHO05D007936 3.6e-126 455.3 295 77.3
QL11p013482 Quercus lobata HOM05D006242 ORTHO05D007936 8.0e-126 454.1 294 77.2
Thecc.02G006000 Theobroma cacao HOM05D006242 ORTHO05D007936 3.4e-124 448.7 296 75.7
Duzib248G1438 Durio zibethinus HOM05D006242 ORTHO05D007936 2.7e-121 439.1 294 75.2
Rhsim06G0063600 Rhododendron simsii HOM05D006242 ORTHO05D007936 2.7e-121 439.1 290 73.1
Manes.03G074100 Manihot esculenta HOM05D006242 ORTHO05D007936 2.9e-120 435.6 292 74.0
Sabra01G0132400 Salix brachista HOM05D006242 ORTHO05D007936 6.6e-120 434.5 297 73.1
Potri.001G159600 Populus trichocarpa HOM05D006242 ORTHO05D007936 3.3e-119 432.2 296 72.3
Actinidia22421 Actinidia chinensis HOM05D006242 ORTHO05D007936 2.1e-118 429.5 290 72.1
CAN.G79.44 Capsicum annuum HOM05D006242 ORTHO05D007936 4.7e-118 428.3 290 70.7
Nitab4.5_0008021g0020 Nicotiana tabacum HOM05D006242 ORTHO05D007936 6.1e-118 427.9 309 68.9
Hma1.2p1_1499F.1_g287250 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 8.0e-118 427.6 291 69.8
Gohir.D12G047300 Gossypium hirsutum HOM05D006242 ORTHO05D007936 1.0e-117 427.2 294 73.1
Gorai.008G050000 Gossypium raimondii HOM05D006242 ORTHO05D007936 3.0e-117 425.6 294 72.8
Gohir.A12G048500 Gossypium hirsutum HOM05D006242 ORTHO05D007936 6.8e-117 424.5 294 72.4
Cpa.g.sc30.139 Carica papaya HOM05D006242 ORTHO05D007936 8.9e-117 424.1 293 71.7
PGSC0003DMG400014939 Solanum tuberosum HOM05D006242 ORTHO05D007936 2.6e-116 422.5 290 70.0
TWI38G1455 Tripterygium wilfordii HOM05D006242 ORTHO05D007936 9.8e-116 420.6 294 72.4
Solyc02g031980.3 Solanum lycopersicum HOM05D006242 ORTHO05D007936 2.2e-115 419.5 290 69.3
CANSAT35G0032 Cannabis sativa HOM05D006242 ORTHO05D007936 4.9e-115 418.3 292 70.9
MBI02_g26996_MAGBIO Magnolia biondii HOM05D006242 ORTHO05D007936 1.2e-113 413.7 291 69.8
DCAR_007782 Daucus carota HOM05D006242 ORTHO05D007936 2.7e-113 412.5 292 69.2
Lj6g0025800 Lotus japonicus HOM05D006242 ORTHO05D007936 1.9e-111 406.4 295 67.5
HanXRQChr12g0381511 Helianthus annuus HOM05D006242 ORTHO05D007936 1.2e-110 403.7 291 68.4
Medtr1g050428 Medicago truncatula HOM05D006242 ORTHO05D007936 1.2e-110 403.7 290 67.6
Oeu058943.1 Olea europaea HOM05D006242 ORTHO05D007936 1.2e-110 403.7 306 65.7
PSO541G0450 Papaver somniferum HOM05D006242 ORTHO05D007936 2.8e-110 402.5 290 69.7
PSO675G0930 Papaver somniferum HOM05D006242 ORTHO05D007936 1.0e-109 400.6 290 69.3
Cc00_g22870 Coffea canephora HOM05D006242 ORTHO05D007936 2.3e-109 399.4 292 67.1
ECA232G2813 Erigeron canadensis HOM05D006242 ORTHO05D007936 2.3e-109 399.4 291 67.4
Eucgr.B01565 Eucalyptus grandis HOM05D006242 ORTHO05D007936 4.0e-109 398.7 290 68.6
ClCG01G025640 Citrullus lanatus HOM05D006242 ORTHO05D007936 5.8e-108 394.8 295 67.8
CsaV3_6G052870 Cucumis sativus L. HOM05D006242 ORTHO05D007936 2.2e-107 392.9 295 67.8
Ca_19722_v3 Cicer arietinum L. HOM05D006242 ORTHO05D007936 8.3e-107 391.0 290 65.5
Lalb_Chr19g0129141 Lupinus albus HOM05D006242 ORTHO05D007936 1.2e-105 387.1 292 65.8
MSTRG.20044 Avicennia marina HOM05D006242 ORTHO05D007936 2.7e-105 386.0 294 65.6
Thhalv10017018m.g Eutrema salsugineum HOM05D006242 ORTHO05D007936 6.0e-105 384.8 290 66.2
PGR004G2427 Punica granatum HOM05D006242 ORTHO05D007936 2.3e-104 382.9 293 66.2
Ciclev10016161m.g Citrus clementina HOM05D006242 ORTHO05D007936 8.6e-104 380.9 290 68.3
SGA_v2.0_scaffold51G18672 Striga asiatica HOM05D006242 ORTHO05D007936 8.6e-104 380.9 293 65.2
Cc09_g05740 Coffea canephora HOM05D006242 ORTHO05D007936 1.5e-103 380.2 296 64.9
Lj1A1147G28 Lonicera japonica HOM05D006242 ORTHO05D007936 4.3e-103 378.6 268 71.6
Sed0024740 Sechium edule HOM05D006242 ORTHO05D007936 4.3e-103 378.6 298 62.8
Carub.0004s1673 Capsella rubella HOM05D006242 ORTHO05D007936 7.3e-103 377.9 290 64.8
C04p13760 Brassica napus HOM05D003281 ORTHO05D004128 1.2e-102 377.1 290 64.1
BolC4t22966H Brassica oleracea HOM05D003281 ORTHO05D004128 1.2e-102 377.1 290 64.1
MELO3C007020.2 Cucumis melo HOM05D006242 ORTHO05D007936 1.2e-102 377.1 330 60.9
EL10Ac7g16757 Beta vulgaris HOM05D006242 ORTHO05D007936 2.8e-102 375.9 290 64.5
Peaxi162Scf00198g01026 Petunia axillaris HOM05D006242 ORTHO05D007936 3.6e-102 375.6 290 64.5
A05p10660 Brassica napus HOM05D003281 ORTHO05D004128 1.1e-101 374.0 290 63.4
Aa31LG9G16170 Aethionema arabicum HOM05D003281 ORTHO05D004128 1.8e-101 373.2 291 65.6
AL4G31060 Arabidopsis lyrata HOM05D006242 ORTHO05D007936 2.6e-100 369.4 307 61.2
Glyma.02G163900 Glycine max HOM05D006242 ORTHO05D007936 3.4e-100 369.0 294 62.9
Cc09_g05610 Coffea canephora HOM05D006242 ORTHO05D007936 4.4e-100 368.6 275 66.9
CSS0025117 Camellia sinensis var. sinensis HOM05D006242 ORTHO05D007936 3.7e-99 365.5 242 72.7
Migut.K01175 Erythranthe guttata HOM05D006242 ORTHO05D007936 6.4e-99 364.8 293 63.1
CDE05G0364 Ceratophyllum demersum HOM05D006242 ORTHO05D007936 1.1e-98 364.0 291 61.2
SalBow7G3063 Salvia bowleyana HOM05D006242 ORTHO05D007936 1.1e-98 364.0 298 61.4
Sc17g0004220 Simmondsia chinensis HOM05D006242 ORTHO05D007936 4.1e-98 362.1 254 70.5
THA.LOC104798560 Tarenaya hassleriana HOM05D006242 ORTHO05D007936 7.8e-97 357.8 358 52.8
Zm00001eb233240 Zea mays HOM05D006242 ORTHO05D007936 1.9e-95 353.2 289 60.6
Psat6g094920 Pisum sativum HOM05D006242 ORTHO05D007936 2.1e-94 349.7 264 65.2
Nitab4.5_0000138g0120 Nicotiana tabacum HOM05D006242 ORTHO05D007936 4.7e-94 348.6 298 60.7
TPR.G10622 Trifolium pratense HOM05D006242 ORTHO05D007936 6.2e-94 348.2 290 60.0
Hma1.2p1_1700F.1_g298210 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 3.7e-91 339.0 309 57.9
COL.COLO4_17635 Corchorus olitorius HOM05D006242 ORTHO05D007936 1.4e-90 337.0 229 70.7
Sp2g07040 Schrenkiella parvula HOM05D006242 ORTHO05D007936 1.2e-89 334.0 255 63.9
SEGI_06259 Sequoiadendron giganteum HOM05D006242 ORTHO05D007936 4.6e-89 332.0 293 57.0
BcaC02g11584 Brassica carinata HOM05D006242 ORTHO05D007936 1.3e-88 330.5 293 61.1
SpUn0157_0010 Schrenkiella parvula HOM05D006242 ORTHO05D007936 4.3e-87 325.5 270 61.1
Lsat_1_v5_gn_6_96480 Lactuca sativa HOM05D006242 ORTHO05D007936 1.8e-85 320.1 228 70.6
arahy.Tifrunner.gnm1.ann1.PA3R73 Arachis hypogaea HOM05D006242 ORTHO05D007936 1.5e-84 317.0 282 57.8
HanXRQChr12g0369481 Helianthus annuus HOM05D006242 ORTHO05D007936 2.6e-84 316.2 243 65.8
CiPaw.09G074600 Carya illinoinensis HOM05D006242 ORTHO05D007936 3.2e-82 309.3 211 73.5
Hma1.2p1_1499F.1_g287260 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 2.7e-81 306.2 198 71.7
Sopen02g010240 Solanum pennellii HOM05D006242 ORTHO05D007936 8.7e-80 301.2 198 72.7
Lj6g0012918 Lotus japonicus HOM05D006242 ORTHO05D007936 8.1e-78 294.7 201 70.6
Cc09_g05660 Coffea canephora HOM05D006242 ORTHO05D007936 5.3e-77 292.0 227 64.8
arahy.Tifrunner.gnm1.ann1.VZGM4G Arachis hypogaea HOM05D006242 ORTHO05D007936 8.4e-75 284.6 256 57.0
Phvul.007G242500 Phaseolus vulgaris HOM05D006242 ORTHO05D007936 5.1e-72 275.4 173 75.1
SMO203G0088 Selaginella moellendorffii HOM05D006242 ORTHO05D007936 1.4e-69 267.3 290 46.2
Mapoly0026s0041 Marchantia polymorpha HOM05D006242 ORTHO05D007936 2.6e-68 263.1 292 47.6
Pp3c12_18460 Physcomitrium patens HOM05D006242 ORTHO05D007936 2.2e-67 260.0 302 44.4
Nn7g38280 Nelumbo nucifera HOM05D006242 ORTHO05D007936 5.4e-66 255.4 290 50.0
AagrBONN_evm.TU.Sc2ySwM_228.1028 Anthoceros agrestis HOM05D006242 ORTHO05D007936 9.3e-66 254.6 295 44.7
AT2G35035 Arabidopsis thaliana HOM05D006242 ORTHO05D007936 1.6e-65 253.8 283 50.2
CARHR129200 Cardamine hirsuta HOM05D006242 ORTHO05D007936 7.4e-63 245.0 198 63.1
TAR624G0344 Trochodendron aralioides HOM05D006242 ORTHO05D007936 7.4e-63 245.0 186 66.7
Glyma.20G074000 Glycine max HOM05D006242 ORTHO05D007936 4.5e-60 235.7 206 57.3
VMungo0720G1734 Vigna mungo HOM05D006242 ORTHO05D007936 6.2e-54 215.3 182 61.5
AUR62040160 Chenopodium quinoa HOM05D006242 ORTHO05D007936 3.1e-53 213.0 169 62.7
Cc09_g05680 Coffea canephora HOM05D006242 ORTHO05D007936 3.1e-53 213.0 187 59.9
ATR1094G001 Amborella trichopoda HOM05D006242 ORTHO05D007936 5.3e-53 212.2 210 52.4
CBR_g46754 Chara braunii HOM05D006242 ORTHO05D007936 6.1e-49 198.7 256 43.0
HPP92_011011 Vanilla planifolia HOM05D006242 ORTHO05D007936 3.6e-41 172.9 138 63.0
unitig_37.g12020 Utricularia gibba HOM05D006242 ORTHO05D007936 3.0e-40 169.9 123 66.7
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 8.2e-38 161.8 323 34.1
GSVIVG01006138001 Vitis vinifera HOM05D006242 ORTHO05D007936 6.9e-37 158.7 92 82.6
Hma1.2p1_1700F.1_g298200 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 1.3e-35 154.5 93 75.3
Aqoxy1G01391 Aquilegia oxysepala HOM05D006242 ORTHO05D007936 7.9e-33 145.2 92 73.9
Cc09_g05630 Coffea canephora HOM05D006242 ORTHO05D007936 4.4e-31 139.4 147 53.7
SGA_v2.0_scaffold4G02502 Striga asiatica HOM05D006242 ORTHO05D007936 2.2e-30 137.1 93 71.0
Hund15670 Selenicereus undatus HOM05D006242 ORTHO05D007936 2.4e-29 133.7 92 66.3
AUR62037908 Chenopodium quinoa HOM05D006242 ORTHO05D007936 5.5e-26 122.5 87 65.5
Phvul.007G242466 Phaseolus vulgaris HOM05D006242 ORTHO05D007936 2.1e-25 120.6 107 57.9
BraA05t20007Z Brassica rapa HOM05D003281 ORTHO05D004128 3.6e-25 119.8 125 52.0
MCO04G402 Micromonas commoda HOM05D006242 ORTHO05D007936 3.6e-25 119.8 171 38.6
ATR1094G019 Amborella trichopoda HOM05D006242 ORTHO05D007936 3.3e-23 113.2 80 65.0
TPR.G22035 Trifolium pratense HOM05D006242 ORTHO05D007936 7.4e-23 112.1 76 68.4
VMungo0720G2601 Vigna mungo HOM05D006242 ORTHO05D007936 2.4e-21 107.1 96 56.2
Cc09_g05720 Coffea canephora HOM05D006242 ORTHO05D007936 4.1e-21 106.3 67 68.7
HPP92_011012 Vanilla planifolia HOM05D006242 ORTHO05D007936 1.3e-19 101.3 120 44.2
BcaB02g09486 Brassica carinata HOM05D006242 ORTHO05D007936 1.7e-19 100.9 102 56.9
Cc09_g05640 Coffea canephora HOM05D006242 ORTHO05D007936 1.5e-18 97.8 65 64.6
AUR62040161 Chenopodium quinoa HOM05D006242 ORTHO05D007936 7.2e-18 95.5 90 53.3
Cfa025972 Carpinus fangiana HOM05D006242 ORTHO05D007936 1.4e-16 91.3 214 31.8
CiPaw.09G216300 Carya illinoinensis HOM05D006242 ORTHO05D007936 1.4e-13 81.3 81 54.3
SHI14613 Sapria himalayana HOM05D000105 ORTHO05D000023 3.5e-12 76.6 52 67.3
Hund15669 Selenicereus undatus HOM05D000023 ORTHO05D000014 5.0e-11 72.8 66 59.1
Cc09_g05710 Coffea canephora HOM05D006242 ORTHO05D007936 1.9e-10 70.9 57 63.2
Os02g0173000 Oryza sativa ssp. japonica HOM05D006242 ORTHO05D007936 3.2e-10 70.1 52 61.5


User provided reference genes

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