Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G1753 Fragaria x ananassa HOM05D006017 ORTHO05D007821 1.8e-308 1061.6 494 100.0
FAN16G2700 Fragaria x ananassa HOM05D006017 ORTHO05D007821 1.4e-276 955.7 494 92.1
FAN11G3087 Fragaria x ananassa HOM05D006017 ORTHO05D007821 1.9e-273 945.3 497 90.5
RcHm_v2.0_Chr5g0031821 Rosa chinensis HOM05D006017 ORTHO05D007821 7.8e-267 923.3 494 88.3
Prupe.4G172100 Prunus persica HOM05D006017 ORTHO05D007821 5.1e-250 867.5 483 83.2
vmacro09508 Vaccinium macrocarpon HOM05D006017 ORTHO05D007821 9.9e-238 826.6 476 78.2
Dinv14956 Davidia involucrata HOM05D006017 ORTHO05D007821 6.4e-237 823.9 484 77.9
Hma1.2p1_0416F.1_g148570 Hydrangea macrophylla HOM05D006017 ORTHO05D007821 1.4e-236 822.8 475 79.4
TWI38G0439 Tripterygium wilfordii HOM05D006017 ORTHO05D007821 2.7e-235 818.5 477 78.8
Haze_09368 Corylus avellana HOM05D006017 ORTHO05D007821 2.3e-234 815.5 494 76.9
MSTRG.14945 Avicennia marina HOM05D006017 ORTHO05D007821 1.9e-233 812.4 469 79.5
Rhsim04G0023700 Rhododendron simsii HOM05D006017 ORTHO05D007821 3.3e-233 811.6 462 79.9
PGSC0003DMG400015330 Solanum tuberosum HOM05D006017 ORTHO05D007821 5.6e-233 810.8 477 76.9
Atru.chr2.2344 Acer truncatum HOM05D006017 ORTHO05D007821 7.4e-233 810.4 485 76.9
Solyc12g014100.2 Solanum lycopersicum HOM05D006017 ORTHO05D007821 7.4e-233 810.4 477 76.9
Sopen12g005880 Solanum pennellii HOM05D006017 ORTHO05D007821 7.4e-233 810.4 477 76.7
Cfa019614 Carpinus fangiana HOM05D006017 ORTHO05D007821 2.1e-232 808.9 488 77.0
Actinidia18784 Actinidia chinensis HOM05D006017 ORTHO05D007821 4.0e-231 804.7 480 76.7
CSS0036883 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 4.0e-231 804.7 479 77.0
Cpa.g.sc131.80 Carica papaya HOM05D006017 ORTHO05D007821 6.9e-231 803.9 469 78.5
ClCG07G009900 Citrullus lanatus HOM05D006017 ORTHO05D007821 1.2e-230 803.1 469 78.3
Cc05_g11510 Coffea canephora HOM05D006017 ORTHO05D007821 2.6e-230 802.0 492 74.0
CiPaw.12G115700 Carya illinoinensis HOM05D006017 ORTHO05D007821 4.5e-230 801.2 493 75.3
QL08p027671 Quercus lobata HOM05D006017 ORTHO05D007821 9.9e-230 800.0 480 76.5
Lj8A152T86 Lonicera japonica HOM05D006017 ORTHO05D007821 1.7e-229 799.3 487 76.0
CsaV3_4G008430 Cucumis sativus L. HOM05D006017 ORTHO05D007821 2.2e-229 798.9 469 78.7
Manes.03G103900 Manihot esculenta HOM05D006017 ORTHO05D007821 2.2e-229 798.9 482 77.0
Peaxi162Scf00000g00262 Petunia axillaris HOM05D006017 ORTHO05D007821 2.2e-229 798.9 476 76.5
CANSAT35G1773 Cannabis sativa HOM05D006017 ORTHO05D007821 4.9e-229 797.7 476 76.7
Gorai.002G065000 Gossypium raimondii HOM05D006017 ORTHO05D007821 4.9e-229 797.7 475 76.2
GSVIVG01014248001 Vitis vinifera HOM05D006017 ORTHO05D007821 1.1e-228 796.6 487 75.8
Migut.M00760 Erythranthe guttata HOM05D006017 ORTHO05D007821 1.4e-228 796.2 468 77.8
MELO3C016089.2 Cucumis melo HOM05D006017 ORTHO05D007821 2.4e-228 795.4 469 78.3
Gohir.A01G059400 Gossypium hirsutum HOM05D006017 ORTHO05D007821 2.4e-228 795.4 475 76.2
CiPaw.11G165400 Carya illinoinensis HOM05D006017 ORTHO05D007821 7.1e-228 793.9 477 76.7
Gohir.D01G045400 Gossypium hirsutum HOM05D006017 ORTHO05D007821 7.1e-228 793.9 475 75.8
ECA240G4517 Erigeron canadensis HOM05D006017 ORTHO05D007821 1.2e-227 793.1 492 74.6
Eucgr.F01184 Eucalyptus grandis HOM05D006017 ORTHO05D007821 1.3e-226 789.6 487 75.2
HanXRQChr03g0070991 Helianthus annuus HOM05D006017 ORTHO05D007821 3.0e-226 788.5 464 78.2
Sc03g0010290 Simmondsia chinensis HOM05D006017 ORTHO05D007821 3.0e-226 788.5 486 74.5
Sed0020976 Sechium edule HOM05D006017 ORTHO05D007821 5.1e-226 787.7 470 76.8
Lalb_Chr03g0030841 Lupinus albus HOM05D006017 ORTHO05D007821 2.5e-225 785.4 476 75.6
EL10Ac4g08290 Beta vulgaris HOM05D006017 ORTHO05D007821 3.3e-225 785.0 460 78.3
Thecc.07G102400 Theobroma cacao HOM05D006017 ORTHO05D007821 9.6e-225 783.5 461 77.7
Eucgr.F01185 Eucalyptus grandis HOM05D006017 ORTHO05D007821 1.3e-224 783.1 486 74.7
MBI07_g06432_MAGBIO Magnolia biondii HOM05D006017 ORTHO05D007821 1.3e-224 783.1 480 75.4
PGR083G0123 Punica granatum HOM05D006017 ORTHO05D007821 1.3e-224 783.1 466 77.3
Lj3g0015312 Lotus japonicus HOM05D006017 ORTHO05D007821 2.1e-224 782.3 463 77.3
CAN.G739.4 Capsicum annuum HOM05D006017 ORTHO05D007821 8.2e-224 780.4 520 69.8
Lsat_1_v5_gn_9_98620 Lactuca sativa HOM05D006017 ORTHO05D007821 1.1e-223 780.0 461 76.8
Potri.001G374100 Populus trichocarpa HOM05D006017 ORTHO05D007821 1.1e-223 780.0 476 76.3
A02p10590 Brassica napus HOM05D006017 ORTHO05D007821 6.9e-223 777.3 470 76.0
BraA02t06124Z Brassica rapa HOM05D006017 ORTHO05D007821 6.9e-223 777.3 470 76.0
Oeu061327.1 Olea europaea HOM05D006017 ORTHO05D007821 1.5e-222 776.2 512 70.5
Oeu061328.1 Olea europaea HOM05D006017 ORTHO05D007821 1.5e-222 776.2 512 70.5
C02p17670 Brassica napus HOM05D006017 ORTHO05D007821 4.5e-222 774.6 465 76.3
CARHR267270 Cardamine hirsuta HOM05D006017 ORTHO05D007821 1.7e-221 772.7 470 75.7
DCAR_028453 Daucus carota HOM05D006017 ORTHO05D007821 2.2e-221 772.3 479 74.1
BcaB05g22107 Brassica carinata HOM05D006017 ORTHO05D007821 2.9e-221 771.9 465 76.1
Glyma.12G158600 Glycine max HOM05D006017 ORTHO05D007821 2.9e-221 771.9 474 74.7
PSO541G6385 Papaver somniferum HOM05D006017 ORTHO05D007821 2.9e-221 771.9 479 73.5
Carub.0008s1436 Capsella rubella HOM05D006017 ORTHO05D007821 4.9e-221 771.2 463 76.0
PSO675G4947 Papaver somniferum HOM05D006017 ORTHO05D007821 4.9e-221 771.2 479 73.5
AUR62019513 Chenopodium quinoa HOM05D006017 ORTHO05D007821 6.5e-221 770.8 464 75.6
Sp6g16110 Schrenkiella parvula HOM05D006017 ORTHO05D007821 8.4e-221 770.4 465 75.5
AL8G29200 Arabidopsis lyrata HOM05D006017 ORTHO05D007821 1.4e-220 769.6 463 76.0
Phvul.011G148800 Phaseolus vulgaris HOM05D006017 ORTHO05D007821 1.4e-220 769.6 464 75.6
BcaC03g14354 Brassica carinata HOM05D006017 ORTHO05D007821 5.5e-220 767.7 465 75.9
Medtr8g463280 Medicago truncatula HOM05D006017 ORTHO05D007821 5.5e-220 767.7 466 75.5
BolC2t07897H Brassica oleracea HOM05D006017 ORTHO05D007821 1.2e-219 766.5 465 75.7
ATR0749G089 Amborella trichopoda HOM05D006017 ORTHO05D007821 1.6e-219 766.1 468 75.0
THA.LOC104811882 Tarenaya hassleriana HOM05D006017 ORTHO05D007821 1.6e-219 766.1 465 74.8
Aa31LG3G9950 Aethionema arabicum HOM05D006017 ORTHO05D007821 2.7e-219 765.4 463 74.9
Aqoxy1G02214 Aquilegia oxysepala HOM05D006017 ORTHO05D007821 4.6e-219 764.6 474 73.2
Ca_23058_v3 Cicer arietinum L. HOM05D006017 ORTHO05D007821 7.9e-219 763.8 461 75.5
Ca_30664_v3 Cicer arietinum L. HOM05D006017 ORTHO05D007821 7.9e-219 763.8 461 75.5
AT5G54080 Arabidopsis thaliana HOM05D006017 ORTHO05D007821 1.3e-218 763.1 468 74.1
Psat4g138640 Pisum sativum HOM05D006017 ORTHO05D007821 1.3e-218 763.1 468 75.0
arahy.Tifrunner.gnm1.ann1.DSNA77 Arachis hypogaea HOM05D006017 ORTHO05D007821 2.3e-218 762.3 465 74.6
VMungo1127G0952 Vigna mungo HOM05D006017 ORTHO05D007821 2.3e-218 762.3 463 75.4
arahy.Tifrunner.gnm1.ann1.FV2XB3 Arachis hypogaea HOM05D006017 ORTHO05D007821 6.7e-218 760.8 460 75.4
Sabra16G0246500 Salix brachista HOM05D006017 ORTHO05D007821 1.1e-217 760.0 466 76.4
Nitab4.5_0003077g0020 Nicotiana tabacum HOM05D006017 ORTHO05D007821 9.0e-215 750.4 503 70.4
AUR62036125 Chenopodium quinoa HOM05D006017 ORTHO05D007821 2.9e-213 745.3 464 73.7
HPP92_003902 Vanilla planifolia HOM05D006017 ORTHO05D007821 3.3e-209 731.9 461 71.8
SGA_v2.0_scaffold73G24213 Striga asiatica HOM05D006017 ORTHO05D007821 7.4e-209 730.7 511 68.5
unitig_46.g18314 Utricularia gibba HOM05D006017 ORTHO05D007821 8.2e-208 727.2 480 69.0
Os06g0103300 Oryza sativa ssp. japonica HOM05D006017 ORTHO05D007821 2.0e-206 722.6 462 73.4
Zm00001eb379510 Zea mays HOM05D006017 ORTHO05D007821 2.9e-205 718.8 472 71.0
Ciclev10008509m.g Citrus clementina HOM05D006017 ORTHO05D007821 2.8e-200 702.2 417 78.2
CDE02G3882 Ceratophyllum demersum HOM05D006017 ORTHO05D007821 4.8e-200 701.4 471 69.2
Ah.04g164440 Amaranthus hybridus HOM05D006017 ORTHO05D007821 1.2e-198 696.8 465 70.3
Hund22764 Selenicereus undatus HOM05D006017 ORTHO05D007821 1.0e-194 683.7 426 73.2
Nn1g04303 Nelumbo nucifera HOM05D006017 ORTHO05D007821 1.8e-194 682.9 407 77.4
FvH4_3g19020 Fragaria vesca HOM05D006017 ORTHO05D007821 3.5e-190 668.7 365 87.1
Mapoly0078s0002 Marchantia polymorpha HOM05D006017 ORTHO05D007821 1.6e-187 659.8 474 65.6
Pp3c16_940 Physcomitrium patens HOM05D006017 ORTHO05D007821 6.3e-184 647.9 467 65.3
AagrBONN_evm.TU.Sc2ySwM_228.2578 Anthoceros agrestis HOM05D006017 ORTHO05D007821 8.2e-184 647.5 462 65.4
Thhalv10013691m.g Eutrema salsugineum HOM05D006017 ORTHO05D007821 1.7e-181 639.8 465 65.2
Duzib170G0488 Durio zibethinus HOM05D006017 ORTHO05D007821 2.5e-180 636.0 474 64.8
Nitab4.5_0005445g0020 Nicotiana tabacum HOM05D006017 ORTHO05D007821 1.2e-179 633.6 451 67.0
SMO119G0176 Selaginella moellendorffii HOM05D006017 ORTHO05D007821 2.2e-168 596.3 461 61.8
Hma1.2p1_0416F.1_g148580 Hydrangea macrophylla HOM05D006017 ORTHO05D007821 2.0e-166 589.7 329 81.2
MD03G1237500 Malus domestica HOM05D006017 ORTHO05D007821 4.6e-158 562.0 324 79.6
Cre02.g091200 Chlamydomonas reinhardtii HOM05D006017 ORTHO05D007821 1.1e-156 557.4 479 57.8
SalBow8G4076 Salvia bowleyana HOM05D006017 ORTHO05D007821 1.1e-156 557.4 337 74.5
PRCOL_00000185 Prasinoderma coloniale HOM05D006017 ORTHO05D007821 1.9e-151 540.0 493 55.4
TPR.G22540 Trifolium pratense HOM05D006017 ORTHO05D007821 1.1e-146 524.2 405 62.5
Glyma.06G234200 Glycine max HOM05D006017 ORTHO05D007821 1.3e-128 464.2 271 76.0
CSS0003418 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 3.8e-80 303.1 202 70.3
MD03G1237300 Malus domestica HOM05D006017 ORTHO05D007821 8.5e-80 302.0 182 79.1
FAN25G2436 Fragaria x ananassa HOM05D006017 ORTHO05D007821 1.0e-72 278.5 145 89.0
SEGI_01915 Sequoiadendron giganteum HOM05D006017 ORTHO05D007821 2.2e-67 260.8 180 66.7
Rhsim07G0153900 Rhododendron simsii HOM05D006017 ORTHO05D000252 5.9e-65 252.7 260 48.8
Glyma.06G234050 Glycine max HOM05D006017 ORTHO05D007821 2.5e-63 247.3 133 80.5
BcaC04g20394 Brassica carinata HOM05D006017 ORTHO05D007821 3.2e-63 246.9 392 40.3
C09p44170 Brassica napus HOM05D006017 ORTHO05D017343 2.6e-60 237.3 231 55.0
Nitab4.5_0004022g0010 Nicotiana tabacum HOM05D006017 ORTHO05D007821 1.3e-59 235.0 136 78.7
Oeu061326.1 Olea europaea HOM05D006017 ORTHO05D007821 8.3e-59 232.3 133 79.7
TAR436G0001 Trochodendron aralioides HOM05D006017 ORTHO05D007821 9.5e-55 218.8 140 71.4
TWI38G1497 Tripterygium wilfordii HOM05D006017 ORTHO05D007821 1.3e-48 198.4 119 75.6
CSS0021316 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 1.1e-47 195.3 116 72.4
A10p11370 Brassica napus HOM05D006017 ORTHO05D007821 2.4e-42 177.6 278 41.7
FAN25G2983 Fragaria x ananassa HOM05D006017 ORTHO05D007821 9.8e-36 155.6 101 73.3
SEGI_25954 Sequoiadendron giganteum HOM05D006017 ORTHO05D007821 7.8e-33 146.0 88 72.7
SEGI_23248 Sequoiadendron giganteum HOM05D006017 ORTHO05D007821 5.1e-24 116.7 72 69.4
TWI38G0821 Tripterygium wilfordii HOM05D006017 ORTHO05D413584 8.6e-24 115.9 55 90.9
CSS0031230 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 1.8e-21 108.2 108 51.9
BolC9t57289H Brassica oleracea HOM05D006017 ORTHO05D104628 4.0e-21 107.1 181 36.5
arahy.Tifrunner.gnm1.ann1.EZ2Q4B Arachis hypogaea HOM05D006004 ORTHO05D006976 1.5e-20 105.1 61 72.1
BraA10t43231Z Brassica rapa HOM05D006017 ORTHO05D017343 1.1e-13 82.4 81 49.4
Mapoly0432s0001 Marchantia polymorpha HOM05D019566 ORTHO05D017343 7.1e-10 69.7 43 72.1
HPP92_003866 Vanilla planifolia HOM05D006017 ORTHO05D007821 1.3e-06 58.9 54 55.6


User provided reference genes

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