Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G1732 Fragaria x ananassa HOM05D006736 ORTHO05D008459 1.8e-53 212.2 102 100.0
FvH4_3g42280 Fragaria vesca HOM05D006736 ORTHO05D008459 7.2e-50 200.3 98 98.0
FAN11G0661 Fragaria x ananassa HOM05D006736 ORTHO05D008459 7.2e-50 200.3 98 98.0
FAN25G3397 Fragaria x ananassa HOM05D006736 ORTHO05D008459 7.2e-50 200.3 98 98.0
FAN16G2066 Fragaria x ananassa HOM05D002691 ORTHO05D003304 2.1e-49 198.7 98 96.9
RcHm_v2.0_Chr5g0075611 Rosa chinensis HOM05D006736 ORTHO05D008459 5.7e-39 164.1 98 81.6
Prupe.6G028200 Prunus persica HOM05D006736 ORTHO05D008459 1.3e-27 126.3 103 64.1
Haze_09864 Corylus avellana HOM05D004577 ORTHO05D005062 5.7e-23 110.9 95 58.9
Cfa021889 Carpinus fangiana HOM05D006736 ORTHO05D008459 2.2e-22 109.0 99 55.6
QL08p003180 Quercus lobata HOM05D006736 ORTHO05D008459 9.2e-21 103.6 101 55.4
CiPaw.11G206800 Carya illinoinensis HOM05D006736 ORTHO05D008459 5.6e-18 94.4 96 56.2
Medtr3g461010 Medicago truncatula HOM05D006736 ORTHO05D008459 3.0e-16 88.6 91 54.9
Duzib268G0079 Durio zibethinus HOM05D006736 ORTHO05D008459 4.4e-15 84.7 88 50.0
Thecc.07G008000 Theobroma cacao HOM05D006736 ORTHO05D008459 4.4e-15 84.7 101 47.5
COL.COLO4_07740 Corchorus olitorius HOM05D006736 ORTHO05D008459 5.8e-15 84.3 96 50.0
Eucgr.F02027 Eucalyptus grandis HOM05D006736 ORTHO05D008459 2.9e-14 82.0 83 49.4
Lalb_Chr20g0114121 Lupinus albus HOM05D006736 ORTHO05D008459 4.9e-14 81.3 101 47.5
TPR.G17947 Trifolium pratense HOM05D006736 ORTHO05D008459 4.9e-14 81.3 85 57.6
Duzib170G0862 Durio zibethinus HOM05D006736 ORTHO05D008459 6.4e-14 80.9 90 48.9
MELO3C024968.2 Cucumis melo HOM05D006736 ORTHO05D008459 1.4e-13 79.7 74 54.1
Sed0023265 Sechium edule HOM05D006736 ORTHO05D008459 3.2e-13 78.6 78 59.0
ClCG10G003900 Citrullus lanatus HOM05D006736 ORTHO05D008459 5.4e-13 77.8 98 43.9
ClCG10G004060 Citrullus lanatus HOM05D006736 ORTHO05D008459 5.4e-13 77.8 98 43.9
TAR624G0983 Trochodendron aralioides HOM05D006736 ORTHO05D008459 5.4e-13 77.8 89 47.2
Phvul.006G059230 Phaseolus vulgaris HOM05D006736 ORTHO05D008459 7.0e-13 77.4 80 50.0
Oeu036994.1 Olea europaea HOM05D006736 ORTHO05D008459 9.2e-13 77.0 95 47.4
Lj6g0005510 Lotus japonicus HOM05D006736 ORTHO05D008459 1.2e-12 76.6 73 57.5
CsaV3_7G023850 Cucumis sativus L. HOM05D006736 ORTHO05D008459 1.6e-12 76.3 72 54.2
ClCG09G021530 Citrullus lanatus HOM05D006736 ORTHO05D008459 2.0e-12 75.9 74 52.7
Psat5g166560 Pisum sativum HOM05D006736 ORTHO05D008459 2.0e-12 75.9 105 47.6
VMungo0540G0896 Vigna mungo HOM05D006736 ORTHO05D008459 2.0e-12 75.9 82 52.4
Sed0014616 Sechium edule HOM05D006736 ORTHO05D008459 4.6e-12 74.7 93 41.9
Glyma.14G011700 Glycine max HOM05D006736 ORTHO05D008459 6.0e-12 74.3 90 46.7
Sabra16G0244100 Salix brachista HOM05D006736 ORTHO05D008459 2.3e-11 72.4 104 43.3
Glyma.18G074500 Glycine max HOM05D006736 ORTHO05D008459 3.9e-11 71.6 90 42.2
MELO3C014070.2 Cucumis melo HOM05D006736 ORTHO05D008459 5.0e-11 71.2 87 41.4
Gohir.A01G093700 Gossypium hirsutum HOM05D006736 ORTHO05D008459 5.0e-11 71.2 84 44.0
Potri.001G371400 Populus trichocarpa HOM05D006736 ORTHO05D008459 5.0e-11 71.2 101 41.6
Ciclev10010675m.g Citrus clementina HOM05D006736 ORTHO05D008459 6.6e-11 70.9 91 49.5
Glyma.08G332400 Glycine max HOM05D006736 ORTHO05D008459 6.6e-11 70.9 107 42.1
Lalb_Chr15g0082301 Lupinus albus HOM05D006736 ORTHO05D008459 6.6e-11 70.9 105 41.9
CsaV3_3G003890 Cucumis sativus L. HOM05D006736 ORTHO05D008459 8.6e-11 70.5 89 43.8
Aqoxy4G01886 Aquilegia oxysepala HOM05D006736 ORTHO05D008459 1.9e-10 69.3 88 48.9
Cpa.g.sc12.109 Carica papaya HOM05D006736 ORTHO05D008459 1.9e-10 69.3 60 58.3
MD03G1035000 Malus domestica HOM05D006736 ORTHO05D008459 3.3e-10 68.6 67 62.7
Gohir.D01G078200 Gossypium hirsutum HOM05D006736 ORTHO05D008459 4.3e-10 68.2 84 41.7
Gorai.002G102800 Gossypium raimondii HOM05D006736 ORTHO05D008459 4.3e-10 68.2 84 41.7
QL08p003109 Quercus lobata HOM05D006736 ORTHO05D008459 4.3e-10 68.2 80 46.2
Atru.chr2.3834 Acer truncatum HOM05D006736 ORTHO05D008459 5.6e-10 67.8 69 56.5
Sabra11G0088600 Salix brachista HOM05D006736 ORTHO05D008459 9.5e-10 67.0 49 69.4
GSVIVG01014741001 Vitis vinifera HOM05D006736 ORTHO05D008459 9.5e-10 67.0 86 50.0
TWI38G1827 Tripterygium wilfordii HOM05D006736 ORTHO05D008459 1.2e-09 66.6 37 81.1
LjContig00081g0022969 Lotus japonicus HOM05D006736 ORTHO05D008459 1.6e-09 66.2 104 42.3
Rhsim06G0178800 Rhododendron simsii HOM05D006736 ORTHO05D008459 3.6e-09 65.1 67 47.8
TWI39G1297 Tripterygium wilfordii HOM05D006736 ORTHO05D008459 4.7e-09 64.7 57 63.2
Manes.01G003400 Manihot esculenta HOM05D006736 ORTHO05D008459 6.2e-09 64.3 85 48.2
Sopen07g023750 Solanum pennellii HOM05D006736 ORTHO05D008459 8.0e-09 63.9 90 46.7
Peaxi162Scf00047g02119 Petunia axillaris HOM05D006736 ORTHO05D008459 1.4e-08 63.2 94 43.6
DCAR_008749 Daucus carota HOM05D006736 ORTHO05D008459 1.8e-08 62.8 94 39.4
Sc03g0011540 Simmondsia chinensis HOM05D006736 ORTHO05D008459 1.8e-08 62.8 91 42.9
CARHR269350 Cardamine hirsuta HOM05D006736 ORTHO05D008459 2.3e-08 62.4 44 72.7
BcaC04g20175 Brassica carinata HOM05D006736 ORTHO05D008459 3.1e-08 62.0 67 50.7
Manes.05G200400 Manihot esculenta HOM05D006736 ORTHO05D008459 3.1e-08 62.0 72 51.4
C09p46970 Brassica napus HOM05D006736 ORTHO05D008459 4.0e-08 61.6 67 50.7
BolC9t57545H Brassica oleracea HOM05D006736 ORTHO05D008459 4.0e-08 61.6 67 50.7
Thhalv10015819m.g Eutrema salsugineum HOM05D006736 ORTHO05D008459 4.0e-08 61.6 35 74.3
SGA_v2.0_scaffold49G18393 Striga asiatica HOM05D006736 ORTHO05D008459 5.2e-08 61.2 96 45.8
A10p13210 Brassica napus HOM05D006736 ORTHO05D008459 6.8e-08 60.8 35 74.3
BraA10t43419Z Brassica rapa HOM05D006736 ORTHO05D008459 6.8e-08 60.8 35 74.3
Sopen12g002170 Solanum pennellii HOM05D006736 ORTHO05D008459 6.8e-08 60.8 90 44.4
EL10Ac4g07540 Beta vulgaris HOM05D006736 ORTHO05D008459 8.9e-08 60.5 106 41.5
Gohir.A13G130900 Gossypium hirsutum HOM05D006736 ORTHO05D008459 8.9e-08 60.5 85 45.9
Sp6g17830 Schrenkiella parvula HOM05D006736 ORTHO05D008459 8.9e-08 60.5 35 74.3
Solyc12g006220.3 Solanum lycopersicum HOM05D006736 ORTHO05D008459 8.9e-08 60.5 90 44.4
Solyc07g045200.1 Solanum lycopersicum HOM05D006736 ORTHO05D008459 1.2e-07 60.1 55 56.4
AT5G55980 Arabidopsis thaliana HOM05D006736 ORTHO05D008459 1.5e-07 59.7 50 56.0
BcaB01g04378 Brassica carinata HOM05D006736 ORTHO05D008459 2.0e-07 59.3 35 71.4
BcaB08g35964 Brassica carinata HOM05D006736 ORTHO05D008459 2.0e-07 59.3 67 50.7
ECA236G2479 Erigeron canadensis HOM05D006736 ORTHO05D008459 2.0e-07 59.3 52 57.7
Carub.0008s1632 Capsella rubella HOM05D006736 ORTHO05D008459 2.6e-07 58.9 46 63.0
Hma1.2p1_0599F.1_g186970 Hydrangea macrophylla HOM05D006736 ORTHO05D008459 3.4e-07 58.5 82 43.9
Ah.06g181490 Amaranthus hybridus HOM05D006736 ORTHO05D008459 4.4e-07 58.2 99 39.4
AL8G31560 Arabidopsis lyrata HOM05D006736 ORTHO05D008459 4.4e-07 58.2 45 62.2
Migut.H01277 Erythranthe guttata HOM05D006736 ORTHO05D008459 4.4e-07 58.2 58 58.6
Lsat_1_v5_gn_5_122340 Lactuca sativa HOM05D006736 ORTHO05D008459 4.4e-07 58.2 78 46.2
Sp3g11420 Schrenkiella parvula HOM05D006736 ORTHO05D008459 4.4e-07 58.2 105 41.0
CSS0010283 Camellia sinensis var. sinensis HOM05D006736 ORTHO05D008459 5.8e-07 57.8 91 39.6
Phvul.008G281200 Phaseolus vulgaris HOM05D006736 ORTHO05D008459 5.8e-07 57.8 89 41.6
Aa31LG3G11890 Aethionema arabicum HOM05D006736 ORTHO05D008459 7.5e-07 57.4 45 68.9
Gohir.D13G134200 Gossypium hirsutum HOM05D006736 ORTHO05D008459 7.5e-07 57.4 44 63.6
Gorai.013G150500 Gossypium raimondii HOM05D006736 ORTHO05D008459 7.5e-07 57.4 44 63.6
AT3G13227 Arabidopsis thaliana HOM05D006736 ORTHO05D008459 1.3e-06 56.6 59 55.9
Peaxi162Scf01164g00020 Petunia axillaris HOM05D006736 ORTHO05D008459 1.3e-06 56.6 85 45.9
CARHR087850 Cardamine hirsuta HOM05D006736 ORTHO05D008459 1.7e-06 56.2 114 38.6
ECA234G2793 Erigeron canadensis HOM05D006736 ORTHO05D008459 1.7e-06 56.2 85 38.8
Carub.0003s1260 Capsella rubella HOM05D006736 ORTHO05D008459 2.9e-06 55.5 60 55.0
Migut.M00067 Erythranthe guttata HOM05D006736 ORTHO05D008459 2.9e-06 55.5 91 37.4
Thhalv10021795m.g Eutrema salsugineum HOM05D006736 ORTHO05D008459 3.7e-06 55.1 59 55.9
Oeu019702.1 Olea europaea HOM05D006736 ORTHO05D008459 4.9e-06 54.7 43 65.1
FAN12G2765 Fragaria x ananassa HOM05D007247 ORTHO05D009208 8.3e-06 53.9 46 54.3
MBI14_g39127_MAGBIO Magnolia biondii HOM05D006736 ORTHO05D008459 8.3e-06 53.9 51 54.9


User provided reference genes

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