Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G1688 Fragaria x ananassa HOM05D005997 ORTHO05D008323 1.1e-167 593.2 295 100.0
FAN25G0611 Fragaria x ananassa HOM05D005997 ORTHO05D008323 2.2e-155 552.4 320 88.8
RcHm_v2.0_Chr5g0042181 Rosa chinensis HOM05D005997 ORTHO05D008323 6.9e-154 547.4 288 94.4
RcHm_v2.0_Chr5g0042111 Rosa chinensis HOM05D005997 ORTHO05D008323 5.9e-153 544.3 289 93.4
Prupe.4G230500 Prunus persica HOM05D005997 ORTHO05D008323 4.1e-130 468.4 304 80.3
MD11G1206400 Malus domestica HOM05D005997 ORTHO05D008323 2.7e-129 465.7 299 79.3
FvH4_3g23860 Fragaria vesca HOM05D005997 ORTHO05D008323 7.7e-129 464.2 235 97.0
TAR624G0829 Trochodendron aralioides HOM05D005997 ORTHO05D008323 1.7e-123 446.4 292 76.7
Ciclev10009024m.g Citrus clementina HOM05D005997 ORTHO05D008323 1.8e-122 443.0 297 72.7
Gohir.D01G072400 Gossypium hirsutum HOM05D005997 ORTHO05D008323 2.4e-122 442.6 301 73.4
Gorai.002G095400 Gossypium raimondii HOM05D005997 ORTHO05D008323 4.5e-121 438.3 301 72.4
TWI38G0893 Tripterygium wilfordii HOM05D005997 ORTHO05D008323 6.6e-120 434.5 295 73.2
COL.COLO4_09766 Corchorus olitorius HOM05D005997 ORTHO05D008323 8.6e-120 434.1 300 71.7
Potri.008G180300 Populus trichocarpa HOM05D005997 ORTHO05D008323 8.6e-120 434.1 296 73.6
Thecc.07G024000 Theobroma cacao HOM05D005997 ORTHO05D008323 1.1e-119 433.7 300 72.0
Duzib213G0008 Durio zibethinus HOM05D005997 ORTHO05D008323 1.9e-119 433.0 290 73.8
Sabra08G0137600 Salix brachista HOM05D005997 ORTHO05D008323 2.5e-119 432.6 297 72.1
Gohir.A01G086200 Gossypium hirsutum HOM05D005997 ORTHO05D008323 3.6e-118 428.7 286 73.8
Lj6g0009736 Lotus japonicus HOM05D005997 ORTHO05D008323 6.1e-118 427.9 297 70.7
CANSAT11G0206 Cannabis sativa HOM05D005997 ORTHO05D008323 8.0e-118 427.6 297 71.7
GSVIVG01037764001 Vitis vinifera HOM05D005997 ORTHO05D008323 2.3e-117 426.0 294 73.1
Hma1.2p1_0036F.1_g022850 Hydrangea macrophylla HOM05D005997 ORTHO05D008323 5.2e-117 424.9 286 73.8
Actinidia00103 Actinidia chinensis HOM05D005997 ORTHO05D008323 4.4e-116 421.8 283 73.9
VMungo0540G2314 Vigna mungo HOM05D005997 ORTHO05D008323 3.7e-115 418.7 300 68.7
Phvul.006G051400 Phaseolus vulgaris HOM05D005997 ORTHO05D008323 4.9e-115 418.3 289 70.6
Dinv40826 Davidia involucrata HOM05D005997 ORTHO05D008323 1.1e-114 417.2 281 74.7
Manes.03G134100 Manihot esculenta HOM05D005997 ORTHO05D008323 2.4e-114 416.0 286 70.3
Glyma.08G325100 Glycine max HOM05D005997 ORTHO05D008323 9.2e-114 414.1 298 68.8
Eucgr.F03518 Eucalyptus grandis HOM05D005997 ORTHO05D008323 2.0e-113 412.9 275 73.5
Nitab4.5_0010102g0010 Nicotiana tabacum HOM05D005997 ORTHO05D008323 2.3e-112 409.5 290 68.3
Nn1g03269 Nelumbo nucifera HOM05D005997 ORTHO05D008323 1.9e-111 406.4 288 67.0
Nitab4.5_0001160g0200 Nicotiana tabacum HOM05D005997 ORTHO05D008323 1.9e-111 406.4 300 66.7
Cc05_g14560 Coffea canephora HOM05D005997 ORTHO05D008323 4.3e-111 405.2 285 70.9
Sed0012266 Sechium edule HOM05D005997 ORTHO05D008323 7.3e-111 404.4 292 67.1
arahy.Tifrunner.gnm1.ann1.N1CS9Q Arachis hypogaea HOM05D005997 ORTHO05D008323 2.1e-110 402.9 330 64.5
CsaV3_7G018710 Cucumis sativus L. HOM05D005997 ORTHO05D008323 2.8e-110 402.5 292 65.8
Sc07g0002940 Simmondsia chinensis HOM05D005997 ORTHO05D008323 2.8e-110 402.5 287 68.6
Sopen07g033400 Solanum pennellii HOM05D005997 ORTHO05D008323 1.0e-109 400.6 286 67.1
TPR.G1907 Trifolium pratense HOM05D005997 ORTHO05D008323 1.4e-109 400.2 304 65.8
ClCG09G021010 Citrullus lanatus HOM05D005997 ORTHO05D008323 3.1e-109 399.1 329 60.5
Solyc07g065180.3 Solanum lycopersicum HOM05D005997 ORTHO05D008323 6.8e-109 397.9 286 67.1
CAN.G337.36 Capsicum annuum HOM05D005997 ORTHO05D008323 1.2e-108 397.1 272 70.2
PGSC0003DMG400022292 Solanum tuberosum HOM05D005997 ORTHO05D008323 2.6e-108 396.0 297 65.0
Rhsim06G0225700 Rhododendron simsii HOM05D005997 ORTHO05D008323 3.4e-108 395.6 291 68.7
CiPaw.12G135200 Carya illinoinensis HOM05D005997 ORTHO05D008323 4.4e-108 395.2 220 85.5
arahy.Tifrunner.gnm1.ann1.JACZ02 Arachis hypogaea HOM05D005997 ORTHO05D008323 5.8e-108 394.8 331 62.8
Lalb_Chr06g0174051 Lupinus albus HOM05D005997 ORTHO05D008323 1.3e-107 393.7 281 68.7
Psat5g172000 Pisum sativum HOM05D005997 ORTHO05D008323 8.3e-107 391.0 300 64.0
Medtr3g055920 Medicago truncatula HOM05D005997 ORTHO05D008323 7.0e-106 387.9 307 64.5
PSO210G1255 Papaver somniferum HOM05D005997 ORTHO05D008323 9.2e-106 387.5 260 70.4
Migut.M01687 Erythranthe guttata HOM05D005997 ORTHO05D008323 7.8e-105 384.4 290 66.6
MSTRG.6975 Avicennia marina HOM05D005997 ORTHO05D008323 1.0e-104 384.0 287 68.3
Ca_20145_v3 Cicer arietinum L. HOM05D005997 ORTHO05D008323 1.0e-104 384.0 283 65.4
SGA_v2.0_scaffold168G38522 Striga asiatica HOM05D005997 ORTHO05D008323 3.9e-104 382.1 289 65.1
Haze_09774 Corylus avellana HOM05D005997 ORTHO05D008323 6.6e-104 381.3 300 67.7
SalBow8G0955 Salvia bowleyana HOM05D005997 ORTHO05D008323 1.5e-103 380.2 294 65.0
DCAR_022603 Daucus carota HOM05D005997 ORTHO05D008323 7.3e-103 377.9 242 73.6
Aqoxy1G04030 Aquilegia oxysepala HOM05D005997 ORTHO05D008323 2.8e-102 375.9 251 73.7
Ca_20142_v3 Cicer arietinum L. HOM05D005997 ORTHO05D008323 4.7e-102 375.2 283 64.7
Aa31LG10G3760 Aethionema arabicum HOM05D005997 ORTHO05D008323 3.4e-100 369.0 283 64.7
PGR044G2356 Punica granatum HOM05D005997 ORTHO05D008323 5.8e-100 368.2 215 80.5
THA.LOC104826490 Tarenaya hassleriana HOM05D005997 ORTHO05D008323 7.5e-100 367.9 235 73.2
BraA06t23516Z Brassica rapa HOM05D005997 ORTHO05D008323 1.7e-99 366.7 287 65.2
Lj1C884G3 Lonicera japonica HOM05D005997 ORTHO05D008323 1.7e-99 366.7 290 65.2
Oeu019619.1 Olea europaea HOM05D005997 ORTHO05D008323 2.2e-99 366.3 314 61.8
Thhalv10011693m.g Eutrema salsugineum HOM05D005997 ORTHO05D008323 3.7e-99 365.5 285 62.8
A06p03040 Brassica napus HOM05D005997 ORTHO05D008323 2.4e-98 362.8 287 64.5
QL08p008622 Quercus lobata HOM05D005997 ORTHO05D008323 4.1e-98 362.1 323 60.7
Os03g0587100 Oryza sativa ssp. japonica HOM05D005997 ORTHO05D008323 7.0e-98 361.3 224 72.8
EL10Ac4g07628 Beta vulgaris HOM05D005997 ORTHO05D008323 9.2e-98 360.9 290 64.1
Sp1g37390 Schrenkiella parvula HOM05D005997 ORTHO05D008323 2.1e-97 359.8 296 61.5
AL1G58220 Arabidopsis lyrata HOM05D005997 ORTHO05D008323 2.7e-97 359.4 284 63.4
AT1G50575 Arabidopsis thaliana HOM05D005997 ORTHO05D008323 3.5e-97 359.0 289 62.3
MBI16_g42314_MAGBIO Magnolia biondii HOM05D005997 ORTHO05D008323 1.7e-96 356.7 243 71.2
Carub.0001s3961 Capsella rubella HOM05D005997 ORTHO05D008323 2.3e-96 356.3 290 62.4
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 3.0e-96 355.9 221 75.6
BcaC08g43226 Brassica carinata HOM05D005997 ORTHO05D008323 8.6e-96 354.4 297 62.0
C06p05740 Brassica napus HOM05D005997 ORTHO05D008323 8.6e-96 354.4 297 62.0
BolC6t35684H Brassica oleracea HOM05D005997 ORTHO05D008323 8.6e-96 354.4 297 62.0
SEGI_04256 Sequoiadendron giganteum HOM05D005997 ORTHO05D008323 1.9e-95 353.2 259 67.2
Zm00001eb049320 Zea mays HOM05D005997 ORTHO05D008323 1.9e-95 353.2 227 72.2
BcaB07g33491 Brassica carinata HOM05D005997 ORTHO05D008323 2.5e-95 352.8 274 62.8
CARHR040570 Cardamine hirsuta HOM05D005997 ORTHO05D008323 1.4e-93 347.1 225 72.0
ATR0712G169 Amborella trichopoda HOM05D005997 ORTHO05D008323 1.2e-92 344.0 215 73.5
Lsat_1_v5_gn_7_114661 Lactuca sativa HOM05D005997 ORTHO05D008323 1.2e-92 344.0 261 65.5
MELO3C024895.2 Cucumis melo HOM05D005997 ORTHO05D008323 3.5e-89 332.4 238 66.8
unitig_899.g15278 Utricularia gibba HOM05D005997 ORTHO05D008323 3.9e-88 328.9 192 80.2
AagrBONN_evm.TU.Sc2ySwM_362.871 Anthoceros agrestis HOM05D005997 ORTHO05D008323 6.2e-86 321.6 225 68.0
SMO196G0283 Selaginella moellendorffii HOM05D005997 ORTHO05D008323 1.4e-85 320.5 216 67.6
PGR031G3624 Punica granatum HOM05D005997 ORTHO05D008323 8.9e-85 317.8 186 80.1
Peaxi162Scf00047g00845 Petunia axillaris HOM05D005997 ORTHO05D008323 2.0e-84 316.6 301 57.5
Cpa.g.sc12.206 Carica papaya HOM05D005997 ORTHO05D008323 3.4e-84 315.8 282 58.2
Atru.BG.132.p Acer truncatum HOM05D005997 ORTHO05D008323 1.7e-83 313.5 173 85.0
vmacro11568 Vaccinium macrocarpon HOM05D005997 ORTHO05D008323 5.4e-82 308.5 258 62.0
Psat5g171680 Pisum sativum HOM05D005997 ORTHO05D008323 1.3e-80 303.9 194 73.7
PSO302G0218 Papaver somniferum HOM05D005997 ORTHO05D008323 5.1e-80 302.0 284 55.3
CDE07G1873 Ceratophyllum demersum HOM05D005997 ORTHO05D008323 9.6e-79 297.7 210 69.0
AUR62040674 Chenopodium quinoa HOM05D005997 ORTHO05D008323 3.6e-78 295.8 186 74.7
AUR62015935 Chenopodium quinoa HOM05D005997 ORTHO05D008323 4.7e-78 295.4 288 55.2
Pp3c14_23810 Physcomitrium patens HOM05D005997 ORTHO05D008323 4.4e-76 288.9 257 55.3
Glyma.18G084600 Glycine max HOM05D005997 ORTHO05D008323 1.1e-66 257.7 240 57.5
Dinv10299 Davidia involucrata HOM05D005997 ORTHO05D008323 1.4e-61 240.7 173 69.4
arahy.Tifrunner.gnm1.ann1.D6FGWZ Arachis hypogaea HOM05D005997 ORTHO05D008323 1.3e-54 217.6 150 72.0
CSS0025804 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 3.4e-52 209.5 169 62.7
MCO09G728 Micromonas commoda HOM05D004293 ORTHO05D005044 1.7e-51 207.2 225 45.3
CSS0016170 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 3.2e-50 203.0 128 77.3
CSS0047434 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 4.2e-50 202.6 128 77.3
MCO11G065 Micromonas commoda HOM05D004293 ORTHO05D005044 9.3e-50 201.4 221 44.8
HPP92_007350 Vanilla planifolia HOM05D005997 ORTHO05D008323 2.1e-49 200.3 157 61.8
PRCOL_00002636 Prasinoderma coloniale HOM05D005997 ORTHO05D008323 5.7e-47 192.2 224 47.3
Cfa020073 Carpinus fangiana HOM05D005997 ORTHO05D008323 9.7e-47 191.4 117 80.3
Cre01.g039850 Chlamydomonas reinhardtii HOM05D005997 ORTHO05D005044 1.6e-46 190.7 236 42.4
PRCOL_00000116 Prasinoderma coloniale HOM05D005997 ORTHO05D008323 1.9e-42 177.2 215 42.8
Atru.chr7.2230 Acer truncatum HOM05D005997 ORTHO05D008323 9.7e-39 164.9 97 79.4
Atru.chr7.2351 Acer truncatum HOM05D005997 ORTHO05D008323 9.7e-39 164.9 97 79.4
Aqoxy1G04027 Aquilegia oxysepala HOM05D005997 ORTHO05D008323 1.3e-35 154.5 107 68.2
Prupe.4G230300 Prunus persica HOM05D005997 ORTHO05D008323 6.7e-32 142.1 106 69.8
QL08p004262 Quercus lobata HOM05D005997 ORTHO05D008323 3.3e-31 139.8 135 57.8
QL08p058329 Quercus lobata HOM05D005997 ORTHO05D008323 3.3e-31 139.8 135 57.8
QL05p025044 Quercus lobata HOM05D005997 ORTHO05D008323 1.1e-26 124.8 156 48.7
CSS0048391 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 2.1e-25 120.6 79 72.2
SEGI_34153 Sequoiadendron giganteum HOM05D005997 ORTHO05D008323 3.7e-22 109.8 94 57.4
CSS0044071 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 1.9e-18 97.4 57 78.9
CSS0025137 Camellia sinensis var. sinensis HOM05D005997 ORTHO05D008323 3.0e-16 90.1 50 82.0
QL08p004281 Quercus lobata HOM05D005997 ORTHO05D007626 3.0e-16 90.1 125 45.6
QL08p058354 Quercus lobata HOM05D005997 ORTHO05D007626 5.2e-16 89.4 131 44.3
QL11p054366 Quercus lobata HOM05D005997 ORTHO05D338109 9.7e-15 85.1 123 44.7
QL08p004325 Quercus lobata HOM05D005997 ORTHO05D337094 2.8e-14 83.6 105 49.5
Rhsim03G0100400 Rhododendron simsii HOM05D005997 ORTHO05D338268 8.3e-14 82.0 91 50.5
Lsat_1_v5_gn_8_39280 Lactuca sativa HOM05D005997 ORTHO05D230963 1.0e-08 65.1 48 58.3
arahy.Tifrunner.gnm1.ann1.U3B0HF Arachis hypogaea HOM05D003842 ORTHO05D026908 8.8e-08 62.0 36 80.6
Dinv12329 Davidia involucrata HOM05D000450 ORTHO05D000327 3.7e-06 56.6 175 28.0
QL08p004656 Quercus lobata HOM05D005997 ORTHO05D337365 4.8e-06 56.2 35 71.4


User provided reference genes

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