Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G1648 Fragaria x ananassa HOM05D025255 ORTHO05D004438 1.0e-78 296.6 145 100.0
FvH4_3g30440 Fragaria vesca HOM05D025255 ORTHO05D004438 1.5e-72 276.2 145 93.1
FAN16G1536 Fragaria x ananassa HOM05D025255 ORTHO05D004438 3.3e-72 275.0 152 90.8
FAN11G2118 Fragaria x ananassa HOM05D025255 ORTHO05D004438 8.9e-70 266.9 158 85.4
RcHm_v2.0_Chr5g0056381 Rosa chinensis HOM05D025255 ORTHO05D004438 3.2e-43 178.7 112 79.5
Prupe.6G114400 Prunus persica HOM05D005304 ORTHO05D004438 5.7e-16 88.2 104 50.0
Potri.009G003400 Populus trichocarpa HOM05D005304 ORTHO05D004438 9.0e-14 80.9 65 64.6
QL01p014739 Quercus lobata HOM05D005304 ORTHO05D004438 1.0e-12 77.4 60 65.0
Duzib150G0717 Durio zibethinus HOM05D005304 ORTHO05D004438 1.3e-12 77.0 91 52.7
Thecc.09G296200 Theobroma cacao HOM05D005304 ORTHO05D004438 1.3e-12 77.0 71 57.7
Gohir.A05G084500 Gossypium hirsutum HOM05D005304 ORTHO05D004438 2.9e-12 75.9 87 49.4
Manes.11G153500 Manihot esculenta HOM05D005304 ORTHO05D004438 2.9e-12 75.9 58 58.6
CiPaw.13G144100 Carya illinoinensis HOM05D005304 ORTHO05D004438 8.5e-12 74.3 80 51.2
Duzib168G0406 Durio zibethinus HOM05D005304 ORTHO05D004438 8.5e-12 74.3 55 67.3
Gorai.009G089100 Gossypium raimondii HOM05D005304 ORTHO05D004438 8.5e-12 74.3 87 46.0
Gohir.D05G087300 Gossypium hirsutum HOM05D005304 ORTHO05D004438 1.1e-11 73.9 87 48.3
CSS0034177 Camellia sinensis var. sinensis HOM05D005304 ORTHO05D004438 2.5e-11 72.8 58 62.1
Ciclev10029845m.g Citrus clementina HOM05D005304 ORTHO05D004438 3.2e-11 72.4 79 57.0
Manes.04G012000 Manihot esculenta HOM05D005304 ORTHO05D004438 5.5e-11 71.6 66 56.1
TWI79G0532 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 7.2e-11 71.2 65 52.3
PGR102G2181 Punica granatum HOM05D005304 ORTHO05D004438 1.6e-10 70.1 93 46.2
PGR119G0321 Punica granatum HOM05D005304 ORTHO05D004438 1.6e-10 70.1 97 46.4
CSS0028161 Camellia sinensis var. sinensis HOM05D005304 ORTHO05D004438 2.7e-10 69.3 96 45.8
Eucgr.J00398 Eucalyptus grandis HOM05D005304 ORTHO05D004438 4.6e-10 68.6 109 44.0
Manes.07G093500 Manihot esculenta HOM05D005304 ORTHO05D004438 4.6e-10 68.6 64 53.1
Duzib128G0830 Durio zibethinus HOM05D005304 ORTHO05D004438 7.9e-10 67.8 86 41.9
Gohir.D07G109600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 7.9e-10 67.8 55 61.8
Cpa.g.sc128.74 Carica papaya HOM05D005304 ORTHO05D004438 1.4e-09 67.0 92 46.7
CiPaw.14G106000 Carya illinoinensis HOM05D005304 ORTHO05D004438 1.4e-09 67.0 93 47.3
Gohir.A07G105600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 1.4e-09 67.0 55 61.8
TAR369G0323 Trochodendron aralioides HOM05D001401 ORTHO05D002222 1.4e-09 67.0 85 47.1
TWI63G0695 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 2.3e-09 66.2 64 54.7
Gorai.001G117700 Gossypium raimondii HOM05D005304 ORTHO05D004438 3.0e-09 65.9 55 60.0
TAR633G0523 Trochodendron aralioides HOM05D005304 ORTHO05D004438 5.1e-09 65.1 60 58.3
TAR623G1332 Trochodendron aralioides HOM05D005304 ORTHO05D004438 8.8e-09 64.3 97 43.3
TAR636G3524 Trochodendron aralioides HOM05D005304 ORTHO05D004438 8.8e-09 64.3 68 51.5
Atru.chr3.3495 Acer truncatum HOM05D005304 ORTHO05D004438 1.5e-08 63.5 63 54.0
Manes.10G053200 Manihot esculenta HOM05D005304 ORTHO05D004438 2.0e-08 63.2 67 50.7
Potri.010G231600 Populus trichocarpa HOM05D005304 ORTHO05D004438 2.5e-08 62.8 58 56.9
Lsat_1_v5_gn_9_70641 Lactuca sativa HOM05D005304 ORTHO05D004438 3.3e-08 62.4 68 44.1
Rhsim03G0110900 Rhododendron simsii HOM05D005304 ORTHO05D004438 3.3e-08 62.4 64 53.1
Potri.008G029600 Populus trichocarpa HOM05D005304 ORTHO05D004438 5.7e-08 61.6 67 50.7
Eucgr.B03916 Eucalyptus grandis HOM05D005304 ORTHO05D004438 7.4e-08 61.2 119 37.8
Prupe.2G095100 Prunus persica HOM05D005304 ORTHO05D004438 7.4e-08 61.2 95 38.9
CiPaw.01G264700 Carya illinoinensis HOM05D005304 ORTHO05D004438 1.3e-07 60.5 96 40.6
MELO3C035553.2 Cucumis melo HOM05D026992 ORTHO05D004438 1.3e-07 60.5 89 43.8
QL03p021677 Quercus lobata HOM05D005304 ORTHO05D004438 2.2e-07 59.7 78 43.6
QL08p052941 Quercus lobata HOM05D005304 ORTHO05D004438 2.2e-07 59.7 58 56.9
Sabra08G0019800 Salix brachista HOM05D005304 ORTHO05D004438 2.2e-07 59.7 58 53.4
Nn6g35176 Nelumbo nucifera HOM05D005304 ORTHO05D004438 2.8e-07 59.3 61 52.5
Sabra10G0179600 Salix brachista HOM05D005304 ORTHO05D004438 3.7e-07 58.9 58 51.7
ClCG01G013950 Citrullus lanatus HOM05D026992 ORTHO05D004438 4.8e-07 58.5 97 43.3
CSS0003867 Camellia sinensis var. sinensis HOM05D017072 ORTHO05D004438 6.3e-07 58.2 81 45.7
Duzib114G0655 Durio zibethinus HOM05D005304 ORTHO05D004438 6.3e-07 58.2 86 36.0
Potri.001G212300 Populus trichocarpa HOM05D005304 ORTHO05D004438 6.3e-07 58.2 125 33.6
Duzib128G0918 Durio zibethinus HOM05D005304 ORTHO05D004438 1.1e-06 57.4 99 33.3
Nitab4.5_0001163g0010 Nicotiana tabacum HOM05D005304 ORTHO05D004438 1.1e-06 57.4 83 41.0
Cfa001771 Carpinus fangiana HOM05D005304 ORTHO05D004438 1.4e-06 57.0 60 56.7
Atru.chr12.921 Acer truncatum HOM05D005304 ORTHO05D004438 1.8e-06 56.6 69 47.8
CANSAT56G0274 Cannabis sativa HOM05D005304 ORTHO05D004438 1.8e-06 56.6 91 40.7
TWI38G0392 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 1.8e-06 56.6 106 35.8
MELO3C019852.2 Cucumis melo HOM05D005304 ORTHO05D004438 2.4e-06 56.2 75 42.7
CsaV3_2G032750 Cucumis sativus L. HOM05D005304 ORTHO05D004438 2.4e-06 56.2 75 42.7
Manes.10G053300 Manihot esculenta HOM05D005304 ORTHO05D004438 2.4e-06 56.2 66 48.5
Haze_16785 Corylus avellana HOM05D005304 ORTHO05D004438 3.1e-06 55.8 73 47.9
Sed0010031 Sechium edule HOM05D005304 ORTHO05D004438 3.1e-06 55.8 62 46.8
Sed0018639 Sechium edule HOM05D026992 ORTHO05D004438 3.1e-06 55.8 51 60.8
QL03p011649 Quercus lobata HOM05D005304 ORTHO05D004438 5.3e-06 55.1 58 50.0
Sed0018085 Sechium edule HOM05D005304 ORTHO05D004438 5.3e-06 55.1 72 41.7
AL1G18590 Arabidopsis lyrata HOM05D010843 ORTHO05D012975 6.9e-06 54.7 91 39.6
ClCG08G007940 Citrullus lanatus HOM05D005304 ORTHO05D004438 6.9e-06 54.7 59 47.5
COL.COLO4_32872 Corchorus olitorius HOM05D005304 ORTHO05D004438 6.9e-06 54.7 101 36.6
CsaV3_1G014250 Cucumis sativus L. HOM05D026992 ORTHO05D004438 6.9e-06 54.7 67 47.8
Nn2g13894 Nelumbo nucifera HOM05D005304 ORTHO05D004438 6.9e-06 54.7 76 43.4
A08p35300 Brassica napus HOM05D010843 ORTHO05D012975 9.1e-06 54.3 92 40.2
BraA08t35439Z Brassica rapa HOM05D010843 ORTHO05D012975 9.1e-06 54.3 92 40.2


User provided reference genes

Program Settings