Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G1610 Fragaria x ananassa HOM05D006259 ORTHO05D007804 3.8e-213 744.6 379 100.0
FAN11G4033 Fragaria x ananassa HOM05D006259 ORTHO05D007804 4.1e-191 671.4 386 88.6
FvH4_3g19490 Fragaria vesca HOM05D006259 ORTHO05D007804 5.5e-188 661.0 384 88.3
FAN16G3026 Fragaria x ananassa HOM05D006259 ORTHO05D007804 7.8e-166 587.4 346 88.4
FAN25G1146 Fragaria x ananassa HOM05D006259 ORTHO05D007804 3.9e-165 585.1 350 87.1
RcHm_v2.0_Chr5g0032751 Rosa chinensis HOM05D006259 ORTHO05D007804 1.5e-161 573.2 387 79.8
Prupe.4G176500 Prunus persica HOM05D006259 ORTHO05D007804 3.3e-132 475.7 390 67.7
MD11G1252500 Malus domestica HOM05D006259 ORTHO05D007804 6.9e-130 468.0 387 66.7
CiPaw.11G171900 Carya illinoinensis HOM05D006259 ORTHO05D007804 7.1e-111 404.8 375 58.9
QL08p022713 Quercus lobata HOM05D006259 ORTHO05D007804 2.7e-110 402.9 383 60.8
Cfa020561 Carpinus fangiana HOM05D006259 ORTHO05D007804 4.3e-108 395.6 379 58.0
CANSAT56G1257 Cannabis sativa HOM05D006259 ORTHO05D007804 7.6e-105 384.8 304 64.5
Duzib268G0576 Durio zibethinus HOM05D006259 ORTHO05D007804 1.7e-104 383.6 388 56.2
Dinv20198 Davidia involucrata HOM05D006259 ORTHO05D007804 8.5e-104 381.3 301 65.1
Haze_09453 Corylus avellana HOM05D006259 ORTHO05D007804 4.6e-102 375.6 374 56.7
Manes.15G089200 Manihot esculenta HOM05D006259 ORTHO05D007804 1.0e-101 374.4 382 55.8
CSS0047365 Camellia sinensis var. sinensis HOM05D006259 ORTHO05D007804 6.7e-101 371.7 373 54.2
CSS0047678 Camellia sinensis var. sinensis HOM05D006259 ORTHO05D007804 1.9e-100 370.2 309 61.2
vmacro11886 Vaccinium macrocarpon HOM05D006259 ORTHO05D007804 4.3e-100 369.0 389 52.7
Potri.011G116100 Populus trichocarpa HOM05D006259 ORTHO05D007804 7.4e-100 368.2 383 56.7
Cpa.g.sc622.1 Carica papaya HOM05D006259 ORTHO05D007804 6.3e-99 365.2 388 55.9
Aqoxy1G02333 Aquilegia oxysepala HOM05D006259 ORTHO05D007804 1.8e-98 363.6 381 54.3
Ciclev10008595m.g Citrus clementina HOM05D006259 ORTHO05D007804 2.0e-97 360.1 352 57.4
Sed0019446 Sechium edule HOM05D006259 ORTHO05D007804 3.4e-97 359.4 381 51.4
GSVIVG01014295001 Vitis vinifera HOM05D006259 ORTHO05D007804 1.7e-96 357.1 379 53.0
Sabra11G0101700 Salix brachista HOM05D006259 ORTHO05D007804 2.2e-96 356.7 419 50.4
Thecc.07G095600 Theobroma cacao HOM05D006259 ORTHO05D007804 3.8e-96 355.9 299 62.2
TWI39G0898 Tripterygium wilfordii HOM05D006259 ORTHO05D007804 1.9e-95 353.6 307 59.9
Lalb_Chr19g0134121 Lupinus albus HOM05D006259 ORTHO05D007804 2.5e-95 353.2 388 52.1
THA.LOC104811875 Tarenaya hassleriana HOM05D006259 ORTHO05D007804 3.2e-95 352.8 386 54.4
Gorai.009G375900 Gossypium raimondii HOM05D006259 ORTHO05D007804 9.4e-95 351.3 314 58.9
TAR629G2204 Trochodendron aralioides HOM05D006259 ORTHO05D007804 2.1e-94 350.1 297 61.6
ClCG11G017880 Citrullus lanatus HOM05D006259 ORTHO05D007804 6.7e-93 345.1 379 50.9
Lj8A154G76 Lonicera japonica HOM05D006259 ORTHO05D007804 6.7e-93 345.1 311 60.5
Duzib244G0007 Durio zibethinus HOM05D006259 ORTHO05D007804 8.8e-93 344.7 386 52.8
Glyma.06G237700 Glycine max HOM05D006259 ORTHO05D007804 1.5e-92 344.0 309 56.6
Sopen07g031120 Solanum pennellii HOM05D006259 ORTHO05D007804 4.4e-92 342.4 335 55.5
Ciclev10010717m.g Citrus clementina HOM05D006259 ORTHO05D007804 5.7e-92 342.0 309 60.5
Solyc07g062930.3 Solanum lycopersicum HOM05D006259 ORTHO05D007804 5.7e-92 342.0 335 56.4
Nitab4.5_0002330g0080 Nicotiana tabacum HOM05D006259 ORTHO05D007804 2.8e-91 339.7 391 50.6
CsaV3_4G033510 Cucumis sativus L. HOM05D006259 ORTHO05D007804 4.8e-91 339.0 317 56.2
MELO3C025605.2 Cucumis melo HOM05D006259 ORTHO05D007804 2.4e-90 336.7 390 50.0
Phvul.011G163100 Phaseolus vulgaris HOM05D006259 ORTHO05D007804 2.0e-89 333.6 310 56.1
Lj3g0016272 Lotus japonicus HOM05D006259 ORTHO05D007804 2.6e-89 333.2 398 49.7
MSTRG.15241 Avicennia marina HOM05D006259 ORTHO05D007804 3.4e-89 332.8 385 49.6
DCAR_017124 Daucus carota HOM05D006259 ORTHO05D007804 1.3e-88 330.9 360 50.3
Cc05_g11780 Coffea canephora HOM05D006259 ORTHO05D007804 5.0e-88 328.9 354 51.7
arahy.Tifrunner.gnm1.ann1.J8ZMQ9 Arachis hypogaea HOM05D006259 ORTHO05D007804 6.5e-88 328.6 424 47.4
TPR.G32110 Trifolium pratense HOM05D006259 ORTHO05D007804 6.5e-88 328.6 307 57.3
Nitab4.5_0005017g0010 Nicotiana tabacum HOM05D006259 ORTHO05D007804 1.4e-87 327.4 388 49.0
Medtr8g058780 Medicago truncatula HOM05D006259 ORTHO05D007804 1.9e-87 327.0 308 56.5
Medtr8g061260 Medicago truncatula HOM05D006259 ORTHO05D007804 1.9e-87 327.0 308 56.5
Sc16g0007160 Simmondsia chinensis HOM05D006259 ORTHO05D007804 1.9e-87 327.0 380 47.1
Migut.M00783 Erythranthe guttata HOM05D006259 ORTHO05D007804 3.2e-87 326.2 386 48.7
VMungo1127G0077 Vigna mungo HOM05D006259 ORTHO05D007804 3.2e-87 326.2 311 56.3
arahy.Tifrunner.gnm1.ann1.KCB6L6 Arachis hypogaea HOM05D006259 ORTHO05D007804 4.2e-87 325.9 413 47.0
BcaB05g22091 Brassica carinata HOM05D006259 ORTHO05D007804 9.4e-87 324.7 389 49.6
Hund02234 Selenicereus undatus HOM05D006259 ORTHO05D007804 9.4e-87 324.7 387 48.1
Sp6g16000 Schrenkiella parvula HOM05D006259 ORTHO05D007804 1.6e-86 323.9 390 49.2
Peaxi162Scf00069g01731 Petunia axillaris HOM05D006259 ORTHO05D007804 2.7e-86 323.2 316 54.7
Carub.0008s1423 Capsella rubella HOM05D006259 ORTHO05D007804 6.1e-86 322.0 389 48.3
Thhalv10015851m.g Eutrema salsugineum HOM05D006259 ORTHO05D007804 8.0e-86 321.6 369 49.6
Psat4g178120 Pisum sativum HOM05D006259 ORTHO05D007804 1.4e-85 320.9 318 53.1
CARHR267060 Cardamine hirsuta HOM05D006259 ORTHO05D007804 1.8e-85 320.5 388 48.5
SGA_v2.0_scaffold73G24236 Striga asiatica HOM05D006259 ORTHO05D007804 1.8e-85 320.5 384 47.4
AUR62019461 Chenopodium quinoa HOM05D006259 ORTHO05D007804 1.5e-84 317.4 366 51.1
EL10Ac4g08228 Beta vulgaris HOM05D006259 ORTHO05D007804 2.6e-84 316.6 391 48.8
AT5G53920 Arabidopsis thaliana HOM05D006259 ORTHO05D007804 7.4e-84 315.1 361 52.4
HanXRQChr11g0351981 Helianthus annuus HOM05D006259 ORTHO05D007804 7.4e-84 315.1 353 49.6
HPP92_017550 Vanilla planifolia HOM05D006259 ORTHO05D007804 3.7e-83 312.8 386 47.4
Ah.04g164700 Amaranthus hybridus HOM05D006259 ORTHO05D007804 4.8e-83 312.4 399 46.9
CDE05G3386 Ceratophyllum demersum HOM05D006259 ORTHO05D007804 4.8e-83 312.4 295 56.6
AL8G29030 Arabidopsis lyrata HOM05D006259 ORTHO05D007804 1.4e-82 310.8 366 50.0
Eucgr.F01160 Eucalyptus grandis HOM05D006259 ORTHO05D007804 3.1e-82 309.7 277 57.4
ECA236G1201 Erigeron canadensis HOM05D006259 ORTHO05D007804 4.1e-82 309.3 316 51.6
ATR0150G016 Amborella trichopoda HOM05D006259 ORTHO05D007804 5.3e-82 308.9 312 53.2
Lsat_1_v5_gn_7_104661 Lactuca sativa HOM05D006259 ORTHO05D007804 9.1e-82 308.1 355 48.7
CAN.G162.38 Capsicum annuum HOM05D006259 ORTHO05D007804 2.0e-81 307.0 299 54.5
Rhsim06G0201700 Rhododendron simsii HOM05D006259 ORTHO05D007804 4.5e-81 305.8 321 51.1
A02p10700 Brassica napus HOM05D006259 ORTHO05D007804 1.0e-80 304.7 393 46.8
PGR083G2616 Punica granatum HOM05D006259 ORTHO05D007804 2.9e-80 303.1 355 50.7
PSO541G2103 Papaver somniferum HOM05D006259 ORTHO05D007804 5.0e-80 302.4 353 51.0
Gohir.A04G035300 Gossypium hirsutum HOM05D006259 ORTHO05D007804 1.9e-79 300.4 292 55.8
BcaC03g14368 Brassica carinata HOM05D006259 ORTHO05D007804 5.5e-79 298.9 393 46.8
C02p17820 Brassica napus HOM05D006259 ORTHO05D007804 4.7e-78 295.8 406 45.8
PSO675G6900 Papaver somniferum HOM05D006259 ORTHO05D007804 4.7e-78 295.8 390 47.2
BolC2t07911H Brassica oleracea HOM05D006259 ORTHO05D007804 8.0e-78 295.0 408 45.6
BraA02t06133Z Brassica rapa HOM05D006259 ORTHO05D007804 1.8e-77 293.9 401 45.6
Nn1g06450 Nelumbo nucifera HOM05D006259 ORTHO05D007804 2.3e-77 293.5 288 56.2
Aa31LG3G10030 Aethionema arabicum HOM05D006259 ORTHO05D007804 4.0e-77 292.7 309 50.8
Os05g0497675 Oryza sativa ssp. japonica HOM05D006259 ORTHO05D007804 1.2e-76 291.2 308 48.7
Atru.chr2.2422 Acer truncatum HOM05D006259 ORTHO05D007804 1.7e-75 287.3 231 64.1
Gohir.D05G348100 Gossypium hirsutum HOM05D006259 ORTHO05D007804 5.0e-72 275.8 236 60.6
Oeu025362.1 Olea europaea HOM05D006259 ORTHO05D007804 8.5e-72 275.0 366 44.5
Hma1.2p1_1411F.1_g281740 Hydrangea macrophylla HOM05D006259 ORTHO05D007804 1.8e-66 257.3 190 67.9
unitig_46.g18320 Utricularia gibba HOM05D006259 ORTHO05D007804 3.5e-65 253.1 386 42.5
Mapoly0161s0032 Marchantia polymorpha HOM05D006259 ORTHO05D007804 9.5e-63 245.0 334 42.8
arahy.Tifrunner.gnm1.ann1.JJTS0M Arachis hypogaea HOM05D006259 ORTHO05D007804 2.8e-62 243.4 226 58.4
arahy.Tifrunner.gnm1.ann1.IZH9YM Arachis hypogaea HOM05D006259 ORTHO05D007804 3.6e-62 243.0 220 58.6
Pp3c22_15620 Physcomitrium patens HOM05D006259 ORTHO05D007804 5.2e-61 239.2 315 41.9
Actinidia09701 Actinidia chinensis HOM05D006259 ORTHO05D007804 5.7e-60 235.7 170 67.1
COL.COLO4_36712 Corchorus olitorius HOM05D006259 ORTHO05D007804 4.1e-58 229.6 234 55.1
AagrBONN_evm.TU.Sc2ySwM_362.1898 Anthoceros agrestis HOM05D006259 ORTHO05D007804 1.4e-53 214.5 370 35.7
arahy.Tifrunner.gnm1.ann1.NGC2LD Arachis hypogaea HOM05D006259 ORTHO05D007804 6.4e-51 205.7 237 47.7
arahy.Tifrunner.gnm1.ann1.Y39XKR Arachis hypogaea HOM05D006259 ORTHO05D007804 5.0e-48 196.1 169 59.8
arahy.Tifrunner.gnm1.ann1.88153A Arachis hypogaea HOM05D006259 ORTHO05D007804 1.1e-47 194.9 250 44.4
arahy.Tifrunner.gnm1.ann1.N67PK3 Arachis hypogaea HOM05D006259 ORTHO05D007804 7.3e-47 192.2 275 40.7
arahy.Tifrunner.gnm1.ann1.UFBT31 Arachis hypogaea HOM05D006259 ORTHO05D007804 1.1e-45 188.3 243 44.4
arahy.Tifrunner.gnm1.ann1.SB88KA Arachis hypogaea HOM05D006259 ORTHO05D007804 2.2e-43 180.6 269 39.4
MBI18_g48079_MAGBIO Magnolia biondii HOM05D006259 ORTHO05D007804 1.6e-41 174.5 147 61.9
arahy.Tifrunner.gnm1.ann1.LRZU8J Arachis hypogaea HOM05D006259 ORTHO05D007804 8.6e-40 168.7 227 42.7
SMO230G0105 Selaginella moellendorffii HOM05D006259 ORTHO05D007804 1.4e-37 161.4 168 49.4
arahy.Tifrunner.gnm1.ann1.H7I8JY Arachis hypogaea HOM05D006259 ORTHO05D007804 1.2e-36 158.3 147 52.4
MCO08G332 Micromonas commoda HOM05D006259 ORTHO05D007804 4.4e-36 156.4 306 33.3
Zm00001eb352610 Zea mays HOM05D006259 ORTHO05D007804 3.7e-35 153.3 174 47.1
AUR62036169 Chenopodium quinoa HOM05D006259 ORTHO05D007804 6.4e-35 152.5 238 41.6
arahy.Tifrunner.gnm1.ann1.5V52A0 Arachis hypogaea HOM05D006259 ORTHO05D007804 8.3e-35 152.1 136 53.7
PRCOL_00006646 Prasinoderma coloniale HOM05D006259 ORTHO05D007804 2.7e-33 147.1 194 40.2
Thecc.02G165400 Theobroma cacao HOM05D006259 ORTHO05D007804 2.7e-33 147.1 165 55.8
PRCOL_00002790 Prasinoderma coloniale HOM05D006259 ORTHO05D007804 1.5e-31 141.4 198 39.9
HPP92_017577 Vanilla planifolia HOM05D006259 ORTHO05D007804 3.1e-29 133.7 192 40.6
Cre09.g396735 Chlamydomonas reinhardtii HOM05D006259 ORTHO05D007804 1.2e-28 131.7 318 32.7
COL.COLO4_00923 Corchorus olitorius HOM05D006259 ORTHO05D007804 4.3e-23 113.2 202 34.2
PRCOL_00002336 Prasinoderma coloniale HOM05D006259 ORTHO05D007804 4.9e-19 99.8 190 33.2
Atru.chr2.2423 Acer truncatum HOM05D006259 ORTHO05D007804 2.1e-14 84.3 106 48.1
Duzib213G0106 Durio zibethinus HOM05D006259 ORTHO05D007804 2.6e-12 77.4 77 50.6
arahy.Tifrunner.gnm1.ann1.69KWVE Arachis hypogaea HOM05D007267 ORTHO05D009053 6.0e-09 66.2 62 50.0
arahy.Tifrunner.gnm1.ann1.BBFR3C Arachis hypogaea HOM05D003566 ORTHO05D009053 1.8e-08 64.7 60 51.7
arahy.Tifrunner.gnm1.ann1.I3MG1X Arachis hypogaea HOM05D001891 ORTHO05D005832 2.8e-06 57.4 43 62.8


User provided reference genes

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