Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G1589 Fragaria x ananassa HOM05D003865 ORTHO05D004466 3.3e-81 305.1 161 100.0
FvH4_6g28382 Fragaria vesca HOM05D042008 ORTHO05D000031 2.6e-17 92.8 61 85.2
RcHm_v2.0_Chr5g0035051 Rosa chinensis HOM05D003865 ORTHO05D004466 2.8e-16 89.4 46 91.3
MD03G1221400 Malus domestica HOM05D003865 ORTHO05D004466 6.9e-15 84.7 47 83.0
MD11G1238900 Malus domestica HOM05D003865 ORTHO05D004466 2.0e-14 83.2 46 82.6
Prupe.4G187900 Prunus persica HOM05D003865 ORTHO05D004466 4.5e-14 82.0 46 84.8
Eucgr.F01087 Eucalyptus grandis HOM05D003865 ORTHO05D004466 1.1e-12 77.4 46 78.3
BcaB07g33385 Brassica carinata HOM05D003865 ORTHO05D004466 1.9e-12 76.6 47 74.5
A06p01500 Brassica napus HOM05D003865 ORTHO05D004466 1.9e-12 76.6 47 74.5
BolC6t35932H Brassica oleracea HOM05D003865 ORTHO05D004466 1.9e-12 76.6 47 74.5
BraA06t23371Z Brassica rapa HOM05D003865 ORTHO05D004466 1.9e-12 76.6 47 74.5
Manes.15G084300 Manihot esculenta HOM05D003865 ORTHO05D004466 1.9e-12 76.6 41 87.8
BcaC08g43469 Brassica carinata HOM05D003865 ORTHO05D004466 2.5e-12 76.3 47 74.5
C06p08510 Brassica napus HOM05D003865 ORTHO05D004466 2.5e-12 76.3 47 74.5
Potri.011G124800 Populus trichocarpa HOM05D003865 ORTHO05D004466 2.5e-12 76.3 46 80.4
GSVIVG01014413001 Vitis vinifera HOM05D003865 ORTHO05D004466 2.5e-12 76.3 41 85.4
Cc05_g12570 Coffea canephora HOM05D003865 ORTHO05D004466 4.2e-12 75.5 46 78.3
Hma1.2p1_1143F.1_g261120 Hydrangea macrophylla HOM05D003865 ORTHO05D004466 4.2e-12 75.5 46 76.1
CiPaw.04G123400 Carya illinoinensis HOM05D003865 ORTHO05D004466 7.2e-12 74.7 46 73.9
Hma1.2p1_1143F.1_g261110 Hydrangea macrophylla HOM05D003865 ORTHO05D004466 7.2e-12 74.7 46 73.9
AT3G15534 Arabidopsis thaliana HOM05D003865 ORTHO05D004466 1.2e-11 73.9 47 74.5
Carub.0003s1527 Capsella rubella HOM05D003865 ORTHO05D004466 1.2e-11 73.9 47 72.3
CARHR043080 Cardamine hirsuta HOM05D003865 ORTHO05D004466 1.2e-11 73.9 47 72.3
CANSAT11G1994 Cannabis sativa HOM05D003865 ORTHO05D004466 1.6e-11 73.6 46 73.9
Thhalv10012262m.g Eutrema salsugineum HOM05D003865 ORTHO05D004466 1.6e-11 73.6 47 70.2
Manes.13G150400 Manihot esculenta HOM05D003865 ORTHO05D004466 1.6e-11 73.6 41 82.9
Sed0016537 Sechium edule HOM05D003865 ORTHO05D004466 1.6e-11 73.6 46 76.1
BcaB06g29589 Brassica carinata HOM05D003865 ORTHO05D004466 2.1e-11 73.2 53 66.0
BraA01t03904Z Brassica rapa HOM05D003865 ORTHO05D004466 2.1e-11 73.2 46 71.7
Phvul.005G085500 Phaseolus vulgaris HOM05D003865 ORTHO05D004466 2.1e-11 73.2 46 76.1
Carub.0001s4201 Capsella rubella HOM05D003865 ORTHO05D004466 2.7e-11 72.8 47 72.3
MELO3C016544.2 Cucumis melo HOM05D003865 ORTHO05D004466 2.7e-11 72.8 50 66.0
Lalb_Chr19g0134391 Lupinus albus HOM05D003865 ORTHO05D004466 2.7e-11 72.8 41 82.9
Phvul.011G148500 Phaseolus vulgaris HOM05D003865 ORTHO05D004466 2.7e-11 72.8 46 76.1
CSS0037327 Camellia sinensis var. sinensis HOM05D003865 ORTHO05D004466 3.6e-11 72.4 46 73.9
Cc00_g29860 Coffea canephora HOM05D003865 ORTHO05D004466 3.6e-11 72.4 46 73.9
BcaB04g20919 Brassica carinata HOM05D003865 ORTHO05D004466 4.7e-11 72.0 41 78.0
BcaC09g48519 Brassica carinata HOM05D003865 ORTHO05D004466 4.7e-11 72.0 46 69.6
A05p33870 Brassica napus HOM05D003865 ORTHO05D004466 4.7e-11 72.0 47 70.2
C01p48910 Brassica napus HOM05D003865 ORTHO05D004466 4.7e-11 72.0 46 69.6
BolC1t04854H Brassica oleracea HOM05D003865 ORTHO05D004466 4.7e-11 72.0 46 69.6
Glyma.12G220500 Glycine max HOM05D003865 ORTHO05D004466 4.7e-11 72.0 46 73.9
Manes.12G087700 Manihot esculenta HOM05D003865 ORTHO05D004466 4.7e-11 72.0 46 71.7
PGSC0003DMG400025047 Solanum tuberosum HOM05D003865 ORTHO05D004466 4.7e-11 72.0 49 71.4
VMungo1127G2113 Vigna mungo HOM05D003865 ORTHO05D004466 4.7e-11 72.0 46 76.1
AT1G52855 Arabidopsis thaliana HOM05D003865 ORTHO05D004466 6.1e-11 71.6 47 72.3
EL10Ac9g20679 Beta vulgaris HOM05D003865 ORTHO05D004466 6.1e-11 71.6 46 69.6
Glyma.12G148300 Glycine max HOM05D003865 ORTHO05D004466 6.1e-11 71.6 46 76.1
Hma1.2p1_0213F.1_g090470 Hydrangea macrophylla HOM05D003865 ORTHO05D004466 6.1e-11 71.6 46 73.9
TWI18G0639 Tripterygium wilfordii HOM05D003865 ORTHO05D004466 6.1e-11 71.6 46 69.6
BcaC05g28963 Brassica carinata HOM05D003865 ORTHO05D004466 8.0e-11 71.2 47 68.1
C05p51570 Brassica napus HOM05D003865 ORTHO05D004466 8.0e-11 71.2 47 68.1
BolC5t33845H Brassica oleracea HOM05D003865 ORTHO05D004466 8.0e-11 71.2 47 68.1
CSS0011087 Camellia sinensis var. sinensis HOM05D003865 ORTHO05D004466 8.0e-11 71.2 46 69.6
CSS0044246 Camellia sinensis var. sinensis HOM05D003865 ORTHO05D004466 8.0e-11 71.2 46 69.6
Cfa014557 Carpinus fangiana HOM05D003865 ORTHO05D004466 8.0e-11 71.2 46 71.7
Ciclev10010786m.g Citrus clementina HOM05D003865 ORTHO05D004466 8.0e-11 71.2 46 71.7
CsaV3_3G006060 Cucumis sativus L. HOM05D003865 ORTHO05D004466 8.0e-11 71.2 50 64.0
Lj3g0025843 Lotus japonicus HOM05D003865 ORTHO05D004466 8.0e-11 71.2 46 76.1
Sc06g0009210 Simmondsia chinensis HOM05D003865 ORTHO05D004466 8.0e-11 71.2 47 70.2
TWI39G0307 Tripterygium wilfordii HOM05D003865 ORTHO05D004466 8.0e-11 71.2 46 69.6
CSS0035059 Camellia sinensis var. sinensis HOM05D003865 ORTHO05D004466 1.0e-10 70.9 46 71.7
Phvul.005G107201 Phaseolus vulgaris HOM05D003865 ORTHO05D004466 1.0e-10 70.9 46 69.6
Potri.019G104100 Populus trichocarpa HOM05D003865 ORTHO05D004466 1.0e-10 70.9 46 73.9
Potri.019G104300 Populus trichocarpa HOM05D003865 ORTHO05D004466 1.0e-10 70.9 46 73.9
Solyc07g054470.1 Solanum lycopersicum HOM05D003865 ORTHO05D004466 1.0e-10 70.9 46 69.6
Solyc07g063470.1 Solanum lycopersicum HOM05D003865 ORTHO05D004466 1.0e-10 70.9 46 69.6
Sopen07g031650 Solanum pennellii HOM05D003865 ORTHO05D004466 1.0e-10 70.9 46 69.6
CANSAT64G1248 Cannabis sativa HOM05D003865 ORTHO05D004466 1.8e-10 70.1 46 71.7
Ca_01531_v3 Cicer arietinum L. HOM05D003865 ORTHO05D004466 1.8e-10 70.1 46 69.6
Duzib248G0431 Durio zibethinus HOM05D003865 ORTHO05D004466 1.8e-10 70.1 46 71.7
Migut.H01032 Erythranthe guttata HOM05D003865 ORTHO05D004466 1.8e-10 70.1 46 71.7
Glyma.06G249600 Glycine max HOM05D003865 ORTHO05D004466 1.8e-10 70.1 46 73.9
HanXRQChr17g0554211 Helianthus annuus HOM05D003865 ORTHO05D004466 1.8e-10 70.1 46 71.7
Ciclev10017406m.g Citrus clementina HOM05D003865 ORTHO05D004466 2.3e-10 69.7 46 69.6
COL.COLO4_09463 Corchorus olitorius HOM05D003865 ORTHO05D004466 2.3e-10 69.7 46 69.6
CsaV3_7G004170 Cucumis sativus L. HOM05D003865 ORTHO05D004466 2.3e-10 69.7 46 71.7
Duzib132G0908 Durio zibethinus HOM05D003865 ORTHO05D004466 2.3e-10 69.7 46 73.9
Glyma.13G300400 Glycine max HOM05D003865 ORTHO05D004466 2.3e-10 69.7 46 73.9
PGR083G1332 Punica granatum HOM05D003865 ORTHO05D004466 2.3e-10 69.7 46 71.7
TWI75G0545 Tripterygium wilfordii HOM05D003865 ORTHO05D004466 2.3e-10 69.7 46 67.4
CiPaw.11G174800 Carya illinoinensis HOM05D003865 ORTHO05D004466 3.0e-10 69.3 47 68.1
DCAR_009979 Daucus carota HOM05D003865 ORTHO05D004466 3.0e-10 69.3 47 66.0
Manes.03G115200 Manihot esculenta HOM05D003865 ORTHO05D004466 3.0e-10 69.3 46 71.7
Oeu058398.1 Olea europaea HOM05D003865 ORTHO05D004466 3.0e-10 69.3 41 78.0
Sopen07g028410 Solanum pennellii HOM05D003865 ORTHO05D004466 3.0e-10 69.3 46 67.4
HanXRQChr17g0559361 Helianthus annuus HOM05D003865 ORTHO05D004466 3.9e-10 68.9 41 78.0
Sed0011440 Sechium edule HOM05D003865 ORTHO05D004466 3.9e-10 68.9 46 67.4
CARHR090600 Cardamine hirsuta HOM05D003865 ORTHO05D004466 5.2e-10 68.6 47 68.1
Duzib268G1549 Durio zibethinus HOM05D003865 ORTHO05D004466 5.2e-10 68.6 47 66.0
Gohir.D02G182200 Gossypium hirsutum HOM05D003865 ORTHO05D004466 5.2e-10 68.6 46 69.6
Gorai.005G204700 Gossypium raimondii HOM05D003865 ORTHO05D004466 5.2e-10 68.6 46 69.6
HanXRQChr08g0235631 Helianthus annuus HOM05D003865 ORTHO05D004466 5.2e-10 68.6 46 71.7
Lalb_Chr22g0356421 Lupinus albus HOM05D003865 ORTHO05D004466 5.2e-10 68.6 46 67.4
Thecc.07G074300 Theobroma cacao HOM05D003865 ORTHO05D004466 5.2e-10 68.6 46 67.4
Lsat_1_v5_gn_8_131501 Lactuca sativa HOM05D003865 ORTHO05D004466 6.7e-10 68.2 46 69.6
Lsat_1_v5_gn_8_131640 Lactuca sativa HOM05D003865 ORTHO05D004466 6.7e-10 68.2 46 69.6
PGSC0003DMG400018392 Solanum tuberosum HOM05D003865 ORTHO05D004466 6.7e-10 68.2 46 67.4
PGSC0003DMG400019299 Solanum tuberosum HOM05D003865 ORTHO05D004466 6.7e-10 68.2 46 67.4
Thhalv10021922m.g Eutrema salsugineum HOM05D003865 ORTHO05D004466 8.8e-10 67.8 47 68.1
HanXRQChr17g0559351 Helianthus annuus HOM05D003865 ORTHO05D004466 8.8e-10 67.8 47 70.2
THA.LOC109116854 Tarenaya hassleriana HOM05D003865 ORTHO05D004466 8.8e-10 67.8 47 66.0
GSVIVG01030567001 Vitis vinifera HOM05D003865 ORTHO05D004466 8.8e-10 67.8 46 69.6
ClCG02G017420 Citrullus lanatus HOM05D003865 ORTHO05D004466 1.1e-09 67.4 46 65.2
Potri.013G145100 Populus trichocarpa HOM05D003865 ORTHO05D004466 1.1e-09 67.4 53 64.2
Prupe.3G233100 Prunus persica HOM05D003865 ORTHO05D004466 1.1e-09 67.4 46 69.6
TWI36G0902 Tripterygium wilfordii HOM05D003865 ORTHO05D004466 1.1e-09 67.4 46 69.6
unitig_0.g2049 Utricularia gibba HOM05D003865 ORTHO05D004466 1.1e-09 67.4 46 69.6
FAN02G0273 Fragaria x ananassa HOM05D000030 ORTHO05D013601 1.5e-09 67.0 117 46.2
Glyma.12G201800 Glycine max HOM05D003865 ORTHO05D004466 1.5e-09 67.0 46 69.6
CSS0031855 Camellia sinensis var. sinensis HOM05D003865 ORTHO05D004466 2.0e-09 66.6 41 70.7
Glyma.13G281000 Glycine max HOM05D003865 ORTHO05D004466 2.0e-09 66.6 46 71.7
Gohir.A03G159100 Gossypium hirsutum HOM05D003865 ORTHO05D004466 2.0e-09 66.6 46 67.4
Nn1g06711 Nelumbo nucifera HOM05D003865 ORTHO05D004466 2.0e-09 66.6 46 69.6
CiPaw.03G171100 Carya illinoinensis HOM05D003865 ORTHO05D004466 2.6e-09 66.2 46 69.6
Gorai.009G432200 Gossypium raimondii HOM05D003865 ORTHO05D004466 2.6e-09 66.2 46 67.4
Lsat_1_v5_gn_5_7081 Lactuca sativa HOM05D003865 ORTHO05D004466 2.6e-09 66.2 46 69.6
MD17G1081800 Malus domestica HOM05D003865 ORTHO05D004466 2.6e-09 66.2 41 75.6
ATR0191G001 Amborella trichopoda HOM05D003865 ORTHO05D004466 3.3e-09 65.9 46 69.6
Duzib170G0518 Durio zibethinus HOM05D003865 ORTHO05D004466 3.3e-09 65.9 47 66.0
Eucgr.K00940 Eucalyptus grandis HOM05D003865 ORTHO05D004466 3.3e-09 65.9 41 75.6
Gohir.D05G360466 Gossypium hirsutum HOM05D003865 ORTHO05D004466 3.3e-09 65.9 41 73.2
CSS0032128 Camellia sinensis var. sinensis HOM05D003865 ORTHO05D004466 4.4e-09 65.5 41 75.6
MELO3C013523.2 Cucumis melo HOM05D003865 ORTHO05D004466 4.4e-09 65.5 46 65.2
Migut.M00867 Erythranthe guttata HOM05D003865 ORTHO05D004466 4.4e-09 65.5 46 67.4
Peaxi162Scf00007g02826 Petunia axillaris HOM05D003865 ORTHO05D004466 4.4e-09 65.5 46 65.2
Potri.001G405400 Populus trichocarpa HOM05D003865 ORTHO05D004466 4.4e-09 65.5 46 71.7
TPR.G32874 Trifolium pratense HOM05D003865 ORTHO05D004466 4.4e-09 65.5 46 65.2
MD09G1091900 Malus domestica HOM05D003865 ORTHO05D004466 5.7e-09 65.1 46 67.4
CSS0016755 Camellia sinensis var. sinensis HOM05D003865 ORTHO05D004466 7.4e-09 64.7 41 68.3
TPR.G35550 Trifolium pratense HOM05D003865 ORTHO05D004466 7.4e-09 64.7 46 65.2
FAN12G2783 Fragaria x ananassa HOM05D042008 ORTHO05D000031 9.7e-09 64.3 73 58.9
Cfa020526 Carpinus fangiana HOM05D003865 ORTHO05D004466 1.3e-08 63.9 47 63.8
HanXRQChr05g0156511 Helianthus annuus HOM05D003865 ORTHO05D004466 1.3e-08 63.9 41 73.2
HanXRQChr05g0156551 Helianthus annuus HOM05D003865 ORTHO05D004466 1.3e-08 63.9 41 73.2
MBI18_g32892_MAGBIO Magnolia biondii HOM05D003865 ORTHO05D004466 1.3e-08 63.9 46 67.4
Medtr2g090110 Medicago truncatula HOM05D003865 ORTHO05D004466 1.3e-08 63.9 46 63.0
Nn1g03940 Nelumbo nucifera HOM05D003865 ORTHO05D004466 1.3e-08 63.9 46 67.4
PGR142G1950 Punica granatum HOM05D003865 ORTHO05D004466 1.3e-08 63.9 46 67.4
Psat2g056680 Pisum sativum HOM05D003865 ORTHO05D004466 1.7e-08 63.5 46 67.4
Hma1.2p1_1053F.1_g252410 Hydrangea macrophylla HOM05D003865 ORTHO05D004466 2.2e-08 63.2 47 63.8
RcHm_v2.0_Chr2g0162101 Rosa chinensis HOM05D003865 ORTHO05D004466 2.2e-08 63.2 47 63.8
AT2G20835 Arabidopsis thaliana HOM05D003865 ORTHO05D004466 2.8e-08 62.8 46 67.4
Os07g0564200 Oryza sativa ssp. japonica HOM05D003865 ORTHO05D004466 2.8e-08 62.8 41 75.6
QL08p037564 Quercus lobata HOM05D003865 ORTHO05D004466 2.8e-08 62.8 46 65.2
Cpa.g.sc34.113 Carica papaya HOM05D003865 ORTHO05D004466 3.7e-08 62.4 46 65.2
FvH4_4g10393 Fragaria vesca HOM05D000030 ORTHO05D000031 4.8e-08 62.0 35 91.4
FvH4_4g10394 Fragaria vesca HOM05D000030 ORTHO05D000031 4.8e-08 62.0 60 63.3
Gohir.A01G015600 Gossypium hirsutum HOM05D003865 ORTHO05D004466 4.8e-08 62.0 46 65.2
Gohir.D01G015600 Gossypium hirsutum HOM05D003865 ORTHO05D004466 4.8e-08 62.0 46 65.2
Gorai.002G017300 Gossypium raimondii HOM05D003865 ORTHO05D004466 4.8e-08 62.0 46 65.2
Sed0025956 Sechium edule HOM05D003865 ORTHO05D004466 6.3e-08 61.6 50 54.0
AL3G54020 Arabidopsis lyrata HOM05D003865 ORTHO05D004466 8.2e-08 61.2 46 65.2
BcaB08g34942 Brassica carinata HOM05D003865 ORTHO05D004466 8.2e-08 61.2 46 65.2
BraA09t41256Z Brassica rapa HOM05D003865 ORTHO05D004466 8.2e-08 61.2 46 65.2
CARHR111560 Cardamine hirsuta HOM05D003865 ORTHO05D004466 8.2e-08 61.2 46 65.2
Thhalv10002196m.g Eutrema salsugineum HOM05D003865 ORTHO05D004466 8.2e-08 61.2 46 65.2
FvH4_2g05021 Fragaria vesca HOM05D042008 ORTHO05D000031 8.2e-08 61.2 104 41.3
Sp3g34080 Schrenkiella parvula HOM05D003865 ORTHO05D004466 8.2e-08 61.2 46 65.2
Actinidia12448 Actinidia chinensis HOM05D003865 ORTHO05D004466 1.4e-07 60.5 46 63.0
Aa31LG8G17640 Aethionema arabicum HOM05D003865 ORTHO05D004466 1.4e-07 60.5 46 63.0
BcaC07g41193 Brassica carinata HOM05D003865 ORTHO05D004466 1.8e-07 60.1 46 63.0
C08p41990 Brassica napus HOM05D003865 ORTHO05D004466 1.8e-07 60.1 46 63.0
BolC8t51762H Brassica oleracea HOM05D003865 ORTHO05D004466 1.8e-07 60.1 46 63.0
unitig_899.g15557 Utricularia gibba HOM05D003865 ORTHO05D004466 2.4e-07 59.7 46 60.9
THA.LOC109117138 Tarenaya hassleriana HOM05D003865 ORTHO05D004466 3.1e-07 59.3 46 63.0
Carub.0003s3548 Capsella rubella HOM05D003865 ORTHO05D004466 4.1e-07 58.9 46 63.0
Zm00001eb324400 Zea mays HOM05D003865 ORTHO05D004466 4.1e-07 58.9 41 70.7
BcaC06g36774 Brassica carinata HOM05D003865 ORTHO05D004466 5.3e-07 58.5 46 60.9
BolC7t40459H Brassica oleracea HOM05D003865 ORTHO05D004466 5.3e-07 58.5 46 60.9
Gohir.A01G067400 Gossypium hirsutum HOM05D003865 ORTHO05D004466 7.0e-07 58.2 47 59.6
Gohir.D01G054600 Gossypium hirsutum HOM05D003865 ORTHO05D004466 7.0e-07 58.2 47 59.6
Gorai.002G074500 Gossypium raimondii HOM05D003865 ORTHO05D004466 7.0e-07 58.2 47 59.6
Migut.O00868 Erythranthe guttata HOM05D003865 ORTHO05D004466 9.1e-07 57.8 46 63.0
Lsat_1_v5_gn_9_85200 Lactuca sativa HOM05D003865 ORTHO05D004466 1.2e-06 57.4 40 65.0
EL10Ac4g08086 Beta vulgaris HOM05D003865 ORTHO05D004466 2.6e-06 56.2 41 58.5
BraA05t22209Z Brassica rapa HOM05D003865 ORTHO05D004466 2.6e-06 56.2 48 60.4
Sc03g0009670 Simmondsia chinensis HOM05D003865 ORTHO05D004466 3.5e-06 55.8 46 60.9
Sp1g39430 Schrenkiella parvula HOM05D003865 ORTHO05D004466 7.7e-06 54.7 39 61.5


User provided reference genes

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