Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G1521 Fragaria x ananassa HOM05D005129 ORTHO05D005585 0.0e+00 2177.1 1432 100.0
FAN16G1113 Fragaria x ananassa HOM05D005129 ORTHO05D005585 0.0e+00 2051.2 1418 95.5
FAN25G2195 Fragaria x ananassa HOM05D005129 ORTHO05D005585 0.0e+00 2044.2 1419 93.8
FAN11G1468 Fragaria x ananassa HOM05D005129 ORTHO05D005585 0.0e+00 1930.2 1419 85.7
FvH4_3g10781 Fragaria vesca HOM05D005129 ORTHO05D005585 0.0e+00 1825.8 1346 86.9
RcHm_v2.0_Chr5g0017511 Rosa chinensis HOM05D005129 ORTHO05D005585 0.0e+00 1582.0 1445 78.5
FAN25G0785 Fragaria x ananassa HOM05D005129 ORTHO05D005585 0.0e+00 1221.5 877 76.2
Prupe.4G095800 Prunus persica HOM05D005129 ORTHO05D005585 1.0e-282 977.6 1000 57.9
MD10G1247500 Malus domestica HOM05D005129 ORTHO05D005585 4.3e-265 919.1 1507 49.6
MD05G1268800 Malus domestica HOM05D005129 ORTHO05D005585 5.2e-263 912.1 1483 54.1
Haze_05902 Corylus avellana HOM05D005129 ORTHO05D005585 3.5e-203 713.4 1542 41.2
QL05p063822 Quercus lobata HOM05D005129 ORTHO05D005585 1.5e-198 698.0 1543 42.1
Cfa000799 Carpinus fangiana HOM05D005129 ORTHO05D005585 1.8e-183 647.9 1543 40.0
CANSAT35G1118 Cannabis sativa HOM05D005129 ORTHO05D005585 1.9e-180 637.9 995 43.4
Potri.011G161901 Populus trichocarpa HOM05D005129 ORTHO05D005585 5.5e-172 609.8 1047 40.2
Ciclev10014031m.g Citrus clementina HOM05D005129 ORTHO05D005585 8.8e-170 602.4 1025 42.2
Potri.001G463700 Populus trichocarpa HOM05D005129 ORTHO05D005585 1.4e-167 595.1 1052 41.2
Thecc.06G015200 Theobroma cacao HOM05D005129 ORTHO05D005585 3.1e-167 594.0 1011 40.6
TAR626G1389 Trochodendron aralioides HOM05D005129 ORTHO05D005585 1.9e-164 584.7 1085 38.2
Sabra11G0141700 Salix brachista HOM05D005129 ORTHO05D005585 9.8e-161 572.4 1074 38.8
CSS0016153 Camellia sinensis var. sinensis HOM05D005129 ORTHO05D005585 1.7e-160 571.6 1053 38.9
Gohir.D10G007200 Gossypium hirsutum HOM05D005129 ORTHO05D005585 4.7e-155 553.5 1017 38.3
Gohir.A10G007300 Gossypium hirsutum HOM05D005129 ORTHO05D005585 4.0e-154 550.4 1564 38.8
Gorai.011G007900 Gossypium raimondii HOM05D005129 ORTHO05D005585 5.2e-154 550.1 1014 38.4
Gohir.A05G112850 Gossypium hirsutum HOM05D005129 ORTHO05D005585 2.5e-148 531.2 1033 37.0
Manes.06G058900 Manihot esculenta HOM05D005129 ORTHO05D005585 1.0e-146 525.8 1035 37.1
Gorai.009G117400 Gossypium raimondii HOM05D005129 ORTHO05D005585 1.2e-145 522.3 1569 39.4
Cpa.g.sc166.48 Carica papaya HOM05D005129 ORTHO05D005585 1.3e-144 518.8 1040 37.0
TWI63G1468 Tripterygium wilfordii HOM05D005129 ORTHO05D005585 5.4e-143 513.5 1537 38.8
CiPaw.09G143100 Carya illinoinensis HOM05D005129 ORTHO05D005585 1.6e-142 511.9 911 40.3
Atru.chr3.3029 Acer truncatum HOM05D005129 ORTHO05D005585 2.0e-142 511.5 863 40.9
Glyma.02G281900 Glycine max HOM05D005129 ORTHO05D005585 1.4e-135 488.8 984 37.2
Glyma.14G032500 Glycine max HOM05D005129 ORTHO05D005585 2.7e-134 484.6 989 36.5
VMungo0647G0154 Vigna mungo HOM05D005129 ORTHO05D005585 6.0e-134 483.4 960 37.2
Sed0027997 Sechium edule HOM05D005129 ORTHO05D005585 3.9e-133 480.7 1540 36.1
MELO3C002837.2 Cucumis melo HOM05D005129 ORTHO05D005585 1.1e-132 479.2 1549 32.8
Phvul.008G197100 Phaseolus vulgaris HOM05D005129 ORTHO05D005585 1.9e-132 478.4 971 36.1
CsaV3_1G037120 Cucumis sativus L. HOM05D005129 ORTHO05D005585 9.5e-132 476.1 1552 32.9
LjContig00049g0025087 Lotus japonicus HOM05D005129 ORTHO05D005585 2.1e-131 474.9 999 35.7
ClCG03G008270 Citrullus lanatus HOM05D005129 ORTHO05D005585 1.2e-129 469.2 1554 33.7
Rhsim06G0213800 Rhododendron simsii HOM05D005129 ORTHO05D005585 8.3e-128 463.0 1592 34.8
Lj1C1160T1 Lonicera japonica HOM05D005129 ORTHO05D005585 1.2e-126 459.1 1173 32.8
PGR083G2529 Punica granatum HOM05D005129 ORTHO05D005585 3.9e-125 454.1 994 35.4
Medtr2g031380 Medicago truncatula HOM05D005129 ORTHO05D005585 7.6e-121 439.9 966 36.0
Nn1g08322 Nelumbo nucifera HOM05D005129 ORTHO05D005585 3.2e-119 434.5 1029 34.5
Rhsim03G0093400 Rhododendron simsii HOM05D005129 ORTHO05D005585 1.3e-117 429.1 1031 34.5
GSVIVG01035591001 Vitis vinifera HOM05D005129 ORTHO05D005585 1.3e-117 429.1 864 36.3
Gohir.D05G113300 Gossypium hirsutum HOM05D005129 ORTHO05D005585 1.9e-116 425.2 853 35.3
arahy.Tifrunner.gnm1.ann1.LUZ6WJ Arachis hypogaea HOM05D005129 ORTHO05D005585 3.3e-116 424.5 1523 31.3
arahy.Tifrunner.gnm1.ann1.40GDTE Arachis hypogaea HOM05D005129 ORTHO05D005585 2.1e-115 421.8 1531 31.4
TAR633G0821 Trochodendron aralioides HOM05D005129 ORTHO05D005585 2.4e-114 418.3 738 38.9
TPR.G22269 Trifolium pratense HOM05D005129 ORTHO05D005585 5.8e-113 413.7 1010 34.4
Ca_00871_v3 Cicer arietinum L. HOM05D005129 ORTHO05D005585 4.9e-112 410.6 999 34.2
MBI18_g10016_MAGBIO Magnolia biondii HOM05D005129 ORTHO05D005585 7.1e-111 406.8 1098 32.2
Dinv27170 Davidia involucrata HOM05D005129 ORTHO05D005585 3.3e-108 397.9 784 37.1
Oeu046929.1 Olea europaea HOM05D005129 ORTHO05D005585 5.6e-108 397.1 888 34.8
vmacro03361 Vaccinium macrocarpon HOM05D005129 ORTHO05D005585 6.2e-107 393.7 1539 33.1
Cc09_g07500 Coffea canephora HOM05D005129 ORTHO05D005585 1.1e-106 392.9 1009 32.8
DCAR_003834 Daucus carota HOM05D005129 ORTHO05D005585 9.0e-106 389.8 940 34.5
THA.LOC104812690 Tarenaya hassleriana HOM05D005129 ORTHO05D005585 2.0e-105 388.7 1504 29.7
Aqoxy1G02020_Aqoxy1G02021 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 3.4e-105 387.9 1012 32.7
CiPaw.16G039600 Carya illinoinensis HOM05D005129 ORTHO05D005585 5.8e-105 387.1 920 35.1
Migut.M00948 Erythranthe guttata HOM05D005129 ORTHO05D005585 5.4e-103 380.6 947 33.7
Nitab4.5_0002094g0030 Nicotiana tabacum HOM05D005129 ORTHO05D005585 1.8e-101 375.6 1011 32.1
Lalb_Chr04g0249051 Lupinus albus HOM05D005129 ORTHO05D005585 5.1e-101 374.0 984 32.0
Sopen02g006450 Solanum pennellii HOM05D005129 ORTHO05D005585 4.3e-100 370.9 1010 32.2
MELO3C033745.2 Cucumis melo HOM05D005129 ORTHO05D005585 1.3e-99 369.4 751 36.1
PSO541G3520 Papaver somniferum HOM05D005129 ORTHO05D005585 1.2e-97 362.8 1580 33.5
AUR62005921 Chenopodium quinoa HOM05D005129 ORTHO05D005585 2.2e-96 358.6 938 32.2
Sp4g17070 Schrenkiella parvula HOM05D005129 ORTHO05D005585 6.5e-96 357.1 1466 29.9
AUR62028142 Chenopodium quinoa HOM05D005129 ORTHO05D005585 3.2e-95 354.8 942 32.1
Peaxi162Scf01909g00118 Petunia axillaris HOM05D005129 ORTHO05D005585 3.2e-95 354.8 988 31.2
BolC4t22987H Brassica oleracea HOM05D005129 ORTHO05D005585 5.5e-95 354.0 1451 31.0
Nitab4.5_0000076g0130 Nicotiana tabacum HOM05D005129 ORTHO05D005585 7.1e-95 353.6 1007 31.1
BcaB02g09508 Brassica carinata HOM05D005129 ORTHO05D005585 9.3e-95 353.2 1447 29.3
C04p13980 Brassica napus HOM05D005129 ORTHO05D005585 9.3e-95 353.2 1451 30.9
BcaC02g11559 Brassica carinata HOM05D005129 ORTHO05D005585 2.7e-94 351.7 1450 31.2
Thhalv10016158m.g Eutrema salsugineum HOM05D005129 ORTHO05D005585 6.0e-94 350.5 1456 28.3
AL4G30770 Arabidopsis lyrata HOM05D005129 ORTHO05D005585 4.3e-92 344.4 1464 29.1
A05p10880 Brassica napus HOM05D005129 ORTHO05D005585 9.6e-92 343.2 1445 28.2
Hund21086 Selenicereus undatus HOM05D005129 ORTHO05D005585 2.8e-91 341.7 821 32.8
EL10Ac3g05106 Beta vulgaris HOM05D005129 ORTHO05D005585 6.2e-91 340.5 898 32.2
BraA05t20033Z Brassica rapa HOM05D005129 ORTHO05D005585 1.5e-89 335.9 1447 29.0
AT2G34780 Arabidopsis thaliana HOM05D005129 ORTHO05D005585 5.8e-89 334.0 953 31.3
Sc19g0000270 Simmondsia chinensis HOM05D005129 ORTHO05D005585 7.6e-89 333.6 899 32.4
Solyc07g041330.3 Solanum lycopersicum HOM05D005129 ORTHO05D005585 5.5e-87 327.4 943 30.5
Ah.13g071200 Amaranthus hybridus HOM05D005129 ORTHO05D005585 1.3e-83 316.2 958 30.6
BcaC01g05762 Brassica carinata HOM05D005129 ORTHO05D005585 2.4e-82 312.0 940 31.4
ECA246G0263 Erigeron canadensis HOM05D005129 ORTHO05D005585 6.5e-80 303.9 944 29.3
SalBow8G1057 Salvia bowleyana HOM05D005129 ORTHO05D005585 8.5e-80 303.5 977 28.8
CARHR128940 Cardamine hirsuta HOM05D005129 ORTHO05D005585 9.7e-76 290.0 792 31.3
Solyc02g022870.4 Solanum lycopersicum HOM05D005129 ORTHO05D005585 4.1e-74 284.6 835 30.5
BcaB06g28799 Brassica carinata HOM05D005129 ORTHO05D005585 1.2e-73 283.1 1452 25.7
BolC4t27871H Brassica oleracea HOM05D005129 ORTHO05D005585 5.9e-73 280.8 1456 26.9
CAN.G39.32 Capsicum annuum HOM05D005129 ORTHO05D000007 2.2e-72 278.9 1414 32.0
SGA_v2.0_scaffold333G49012 Striga asiatica HOM05D005129 ORTHO05D005585 6.5e-72 277.3 861 31.5
Sopen07g020720 Solanum pennellii HOM05D005129 ORTHO05D005585 3.2e-71 275.0 783 30.4
Lsat_1_v5_gn_3_43520 Lactuca sativa HOM05D005129 ORTHO05D005585 5.1e-69 267.7 1422 33.0
Aa31LG10G6520 Aethionema arabicum HOM05D005129 ORTHO05D005585 3.3e-68 265.0 749 31.9
HanXRQChr03g0080681 Helianthus annuus HOM05D005129 ORTHO05D005585 5.7e-68 264.2 1476 30.1
SGA_v2.0_scaffold1G00142 Striga asiatica HOM05D005129 ORTHO05D005585 7.4e-68 263.8 1002 28.9
Psat1g165880 Pisum sativum HOM05D005129 ORTHO05D005585 1.8e-66 259.2 694 33.9
Carub.0004s1647 Capsella rubella HOM05D005129 ORTHO05D005585 4.0e-61 241.5 637 32.2
ATR0763G237 Amborella trichopoda HOM05D005129 ORTHO05D005585 1.1e-60 240.0 1042 25.4
C03p22490 Brassica napus HOM05D002581 ORTHO05D002828 6.5e-56 224.2 723 31.4
Aqoxy7G00170 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 1.8e-53 216.1 391 38.1
Aqoxy7G00166 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 2.3e-53 215.7 391 38.1
Aqoxy88s004 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 2.3e-53 215.7 391 38.1
CDE06G2236 Ceratophyllum demersum HOM05D005129 ORTHO05D005585 1.2e-46 193.4 452 30.8
SHI24815 Sapria himalayana HOM05D005129 ORTHO05D005585 4.5e-41 174.9 547 30.5
Dinv27171 Davidia involucrata HOM05D005129 ORTHO05D005585 7.3e-39 167.5 156 58.3
FAN25G0646 Fragaria x ananassa HOM05D005129 ORTHO05D005585 9.5e-39 167.2 162 69.8
Eucgr.D00092 Eucalyptus grandis HOM05D005129 ORTHO05D005585 5.2e-37 161.4 538 28.6
unitig_748.g7646 Utricularia gibba HOM05D005129 ORTHO05D005585 5.2e-37 161.4 424 32.1
Ah.13g069630 Amaranthus hybridus HOM05D005129 ORTHO05D005585 1.2e-36 160.2 816 26.6
Zm00001eb152060 Zea mays HOM05D005129 ORTHO05D005585 7.8e-33 147.5 1071 23.7
Actinidia00605 Actinidia chinensis HOM05D005129 ORTHO05D005585 1.2e-30 140.2 157 47.1
TPR.G8782 Trifolium pratense HOM05D000048 ORTHO05D004674 2.3e-29 136.0 173 43.9
Os01g0768700 Oryza sativa ssp. japonica HOM05D005129 ORTHO05D005585 1.5e-28 133.3 375 28.8
BraA04t18160Z Brassica rapa HOM05D002581 ORTHO05D002828 3.2e-26 125.6 286 36.4
C04p63980 Brassica napus HOM05D002581 ORTHO05D002828 3.5e-25 122.1 285 35.8
A04p26560 Brassica napus HOM05D002581 ORTHO05D002828 4.6e-25 121.7 286 35.7
Medtr5g090200 Medicago truncatula HOM05D005129 ORTHO05D005585 2.3e-24 119.4 178 39.3
Dinv27169 Davidia involucrata HOM05D005129 ORTHO05D005585 1.6e-22 113.2 135 49.6
Gohir.D05G113400 Gossypium hirsutum HOM05D005129 ORTHO05D005585 1.1e-21 110.5 128 50.8
Eucgr.D00091 Eucalyptus grandis HOM05D005129 ORTHO05D005585 6.8e-21 107.8 141 43.3
HPP92_022551 Vanilla planifolia HOM05D005129 ORTHO05D005585 8.9e-21 107.5 146 39.0
GSVIVG01035592001 Vitis vinifera HOM05D005129 ORTHO05D005585 8.3e-19 100.9 134 45.5
TAR633G2434 Trochodendron aralioides HOM05D005129 ORTHO05D005585 1.2e-17 97.1 151 43.0
MELO3C005104.2 Cucumis melo HOM05D005129 ORTHO05D005585 1.6e-17 96.7 105 50.5
HPP92_022552 Vanilla planifolia HOM05D005129 ORTHO05D005585 1.7e-16 93.2 282 29.4
SHI24814 Sapria himalayana HOM05D005129 ORTHO05D005585 2.3e-16 92.8 493 22.9
Rhsim13G0123000 Rhododendron simsii HOM05D005129 ORTHO05D005585 1.2e-14 87.0 115 47.0
Atru.chr3.3028 Acer truncatum HOM05D005129 ORTHO05D005585 2.8e-14 85.9 146 39.7
Lj6g0015855 Lotus japonicus HOM05D005129 ORTHO05D005585 1.1e-13 84.0 171 38.6
Lalb_Chr15g0088861 Lupinus albus HOM05D005129 ORTHO05D005585 1.1e-13 84.0 235 39.1
Aa31LG10G6530 Aethionema arabicum HOM05D005129 ORTHO05D005585 1.8e-13 83.2 149 38.3
Carub.0004s1646 Capsella rubella HOM05D005129 ORTHO05D005585 3.4e-12 79.0 147 37.4
PGSC0003DMG400003904 Solanum tuberosum HOM05D009171 ORTHO05D000440 1.3e-11 77.0 251 28.7
Aqoxy7G00168 Aquilegia oxysepala HOM05D019791 ORTHO05D021351 1.7e-11 76.6 262 31.3
PSO541G6300 Papaver somniferum HOM05D005129 ORTHO05D005585 4.9e-11 75.1 122 41.0
Sopen07g020710 Solanum pennellii HOM05D005129 ORTHO05D005585 1.4e-10 73.6 122 41.8
PSO675G1291 Papaver somniferum HOM05D005129 ORTHO05D005585 3.2e-10 72.4 139 38.1
TPR.G125 Trifolium pratense HOM05D005129 ORTHO05D005585 3.2e-10 72.4 87 48.3
SMO228G0186 Selaginella moellendorffii HOM05D019256 ORTHO05D023510 1.5e-07 63.5 371 22.4
BolC3t14646H Brassica oleracea HOM05D005129 ORTHO05D005585 4.3e-07 62.0 95 40.0
FAN25G0341 Fragaria x ananassa HOM05D005129 ORTHO05D005585 4.3e-07 62.0 39 89.7
PSO675G3866 Papaver somniferum HOM05D026995 ORTHO05D005585 4.3e-07 62.0 134 35.1
Aqoxy2G01760 Aquilegia oxysepala HOM05D029901 ORTHO05D005585 4.7e-06 58.5 86 40.7


User provided reference genes

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