Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G1313 Fragaria x ananassa HOM05D006754 ORTHO05D008403 2.8e-261 904.8 491 100.0
FvH4_3g36800 Fragaria vesca HOM05D006754 ORTHO05D008403 3.0e-178 629.0 406 80.0
FAN11G1342 Fragaria x ananassa HOM05D006754 ORTHO05D008403 1.8e-170 603.2 391 79.5
FAN25G2379 Fragaria x ananassa HOM05D006754 ORTHO05D008403 1.3e-168 597.0 392 79.3
FAN16G0425 Fragaria x ananassa HOM05D006754 ORTHO05D008403 1.8e-167 593.2 371 83.0
RcHm_v2.0_Chr5g0065861 Rosa chinensis HOM05D006754 ORTHO05D008403 3.8e-165 585.5 412 76.9
QL01p030969 Quercus lobata HOM05D006754 ORTHO05D008403 4.7e-147 525.4 431 64.5
MD03G1088200 Malus domestica HOM05D006754 ORTHO05D008403 1.4e-143 513.8 395 70.6
Atru.chr3.3972 Acer truncatum HOM05D006754 ORTHO05D008403 2.0e-142 510.0 379 69.1
Prupe.6G072500 Prunus persica HOM05D006754 ORTHO05D008403 3.5e-142 509.2 392 69.4
Thecc.09G318400 Theobroma cacao HOM05D006754 ORTHO05D008403 1.0e-141 507.7 396 68.2
Gorai.009G097800 Gossypium raimondii HOM05D006754 ORTHO05D008403 4.0e-138 495.7 368 68.5
TWI79G1092 Tripterygium wilfordii HOM05D006754 ORTHO05D008403 2.0e-137 493.4 375 65.9
Gohir.A05G094100 Gossypium hirsutum HOM05D006754 ORTHO05D008403 3.4e-137 492.7 368 68.5
COL.COLO4_18549 Corchorus olitorius HOM05D006754 ORTHO05D008403 7.5e-137 491.5 395 65.1
Potri.001G242400 Populus trichocarpa HOM05D006754 ORTHO05D008403 2.9e-136 489.6 419 62.8
Sabra16G0147200 Salix brachista HOM05D006754 ORTHO05D008403 2.9e-136 489.6 377 67.1
CiPaw.14G067200 Carya illinoinensis HOM05D006754 ORTHO05D008403 1.2e-134 484.2 367 68.9
Ciclev10030407m.g Citrus clementina HOM05D006754 ORTHO05D008403 2.7e-134 483.0 409 61.4
Haze_24130 Corylus avellana HOM05D006754 ORTHO05D008403 4.6e-134 482.3 407 65.4
Potri.009G033700 Populus trichocarpa HOM05D006754 ORTHO05D008403 5.0e-133 478.8 409 61.4
CSS0026926 Camellia sinensis var. sinensis HOM05D006754 ORTHO05D008403 3.3e-132 476.1 399 61.2
CSS0030688 Camellia sinensis var. sinensis HOM05D006754 ORTHO05D008403 2.1e-131 473.4 399 60.9
Eucgr.B02322 Eucalyptus grandis HOM05D006754 ORTHO05D008403 2.1e-131 473.4 381 63.8
Cpa.g.sc81.116 Carica papaya HOM05D006754 ORTHO05D008403 2.8e-131 473.0 365 65.5
Manes.01G171100 Manihot esculenta HOM05D006754 ORTHO05D008403 4.4e-129 465.7 449 58.1
ClCG03G001330 Citrullus lanatus HOM05D006754 ORTHO05D008403 5.8e-129 465.3 361 67.9
Glyma.08G227600 Glycine max HOM05D006754 ORTHO05D008403 3.7e-128 462.6 367 66.5
VMungo1127G1194 Vigna mungo HOM05D006754 ORTHO05D008403 4.9e-128 462.2 367 64.9
Sed0002230 Sechium edule HOM05D006754 ORTHO05D008403 8.3e-128 461.5 381 63.8
Glyma.15G221700 Glycine max HOM05D006754 ORTHO05D008403 1.9e-127 460.3 367 65.1
Sc12g0001320 Simmondsia chinensis HOM05D006754 ORTHO05D008403 1.6e-126 457.2 371 63.9
Hma1.2p1_0615F.1_g189790 Hydrangea macrophylla HOM05D006754 ORTHO05D008403 2.7e-126 456.4 361 64.8
CsaV3_1G034490 Cucumis sativus L. HOM05D006754 ORTHO05D008403 1.0e-125 454.5 371 66.0
PGR102G0280 Punica granatum HOM05D006754 ORTHO05D008403 2.5e-124 449.9 438 57.5
Phvul.011G187300 Phaseolus vulgaris HOM05D006754 ORTHO05D008403 4.3e-124 449.1 367 65.1
Lj3g0006516 Lotus japonicus HOM05D006754 ORTHO05D008403 8.1e-123 444.9 367 63.2
Psat4g178480 Pisum sativum HOM05D006754 ORTHO05D008403 1.4e-122 444.1 371 62.3
THA.LOC104799439 Tarenaya hassleriana HOM05D006754 ORTHO05D008403 3.1e-122 443.0 373 61.7
Nn8g38772 Nelumbo nucifera HOM05D006754 ORTHO05D008403 4.0e-122 442.6 361 64.5
CANSAT56G3630 Cannabis sativa HOM05D006754 ORTHO05D008403 5.2e-122 442.2 408 60.8
PSO339G3555 Papaver somniferum HOM05D006754 ORTHO05D008403 5.2e-122 442.2 372 63.2
PSO063G1099 Papaver somniferum HOM05D006754 ORTHO05D008403 8.9e-122 441.4 376 62.2
Ca_24122_v3 Cicer arietinum L. HOM05D006754 ORTHO05D008403 9.9e-121 438.0 408 57.1
Lj2P1066T40 Lonicera japonica HOM05D006754 ORTHO05D008403 1.1e-119 434.5 369 58.0
Aa31LG1G11840 Aethionema arabicum HOM05D006754 ORTHO05D008403 4.1e-119 432.6 365 62.2
arahy.Tifrunner.gnm1.ann1.826T7K Arachis hypogaea HOM05D006754 ORTHO05D008403 5.4e-119 432.2 380 61.3
THA.LOC104814881 Tarenaya hassleriana HOM05D006754 ORTHO05D008403 1.6e-118 430.6 368 59.2
Aqoxy2G02260 Aquilegia oxysepala HOM05D006754 ORTHO05D008403 7.8e-118 428.3 400 59.0
DCAR_005953 Daucus carota HOM05D006754 ORTHO05D008403 2.3e-117 426.8 377 61.0
Medtr8g044030 Medicago truncatula HOM05D006754 ORTHO05D008403 3.0e-117 426.4 395 57.0
Ah.15g097770 Amaranthus hybridus HOM05D006754 ORTHO05D008403 5.1e-117 425.6 365 62.2
Thhalv10015639m.g Eutrema salsugineum HOM05D006754 ORTHO05D008403 5.1e-117 425.6 367 59.9
AL8G35980 Arabidopsis lyrata HOM05D006754 ORTHO05D008403 1.5e-116 424.1 367 60.2
AT5G59500 Arabidopsis thaliana HOM05D006754 ORTHO05D008403 1.5e-116 424.1 367 59.4
Sopen07g003690 Solanum pennellii HOM05D006754 ORTHO05D008403 3.3e-116 422.9 366 58.5
PGSC0003DMG400030707 Solanum tuberosum HOM05D006754 ORTHO05D008403 3.3e-116 422.9 366 58.5
Solyc07g007700.3 Solanum lycopersicum HOM05D006754 ORTHO05D008403 4.3e-116 422.5 366 58.5
Sp6g21200 Schrenkiella parvula HOM05D006754 ORTHO05D008403 7.3e-116 421.8 367 59.9
EL10Ac7g16047 Beta vulgaris HOM05D006754 ORTHO05D008403 8.1e-115 418.3 375 58.4
CARHR285870 Cardamine hirsuta HOM05D006754 ORTHO05D008403 8.1e-115 418.3 367 58.9
Cc01_g13150 Coffea canephora HOM05D006754 ORTHO05D008403 8.9e-114 414.8 358 61.2
Carub.0008s2018 Capsella rubella HOM05D006754 ORTHO05D008403 1.5e-113 414.1 365 59.2
Oeu026710.1 Olea europaea HOM05D006754 ORTHO05D008403 4.4e-113 412.5 367 59.7
Migut.F00608 Erythranthe guttata HOM05D006754 ORTHO05D008403 1.7e-112 410.6 431 52.9
BcaC04g19764 Brassica carinata HOM05D006754 ORTHO05D008403 8.4e-112 408.3 363 58.7
C09p51900 Brassica napus HOM05D006754 ORTHO05D008403 8.4e-112 408.3 363 58.7
BolC9t58053H Brassica oleracea HOM05D006754 ORTHO05D008403 8.4e-112 408.3 363 58.7
BraA10t43752Z Brassica rapa HOM05D006754 ORTHO05D008403 8.4e-112 408.3 377 57.6
AUR62001757 Chenopodium quinoa HOM05D006754 ORTHO05D008403 9.3e-111 404.8 375 57.6
A10p16710 Brassica napus HOM05D006754 ORTHO05D008403 1.2e-110 404.4 363 58.1
BcaB08g36252 Brassica carinata HOM05D006754 ORTHO05D008403 4.6e-110 402.5 363 57.3
SalBow7G4834 Salvia bowleyana HOM05D006754 ORTHO05D008403 4.6e-110 402.5 366 60.1
SalBow7G2225 Salvia bowleyana HOM05D006754 ORTHO05D008403 1.0e-109 401.4 366 59.8
CAN.G969.5 Capsicum annuum HOM05D006754 ORTHO05D008403 1.3e-109 401.0 363 55.9
MSTRG.21206 Avicennia marina HOM05D006754 ORTHO05D008403 5.1e-109 399.1 402 54.2
HanXRQChr05g0135011 Helianthus annuus HOM05D006754 ORTHO05D008403 5.6e-108 395.6 368 54.3
Nitab4.5_0007132g0020 Nicotiana tabacum HOM05D006754 ORTHO05D008403 1.3e-107 394.4 328 61.3
AUR62009543 Chenopodium quinoa HOM05D006754 ORTHO05D008403 1.8e-106 390.6 368 56.8
Lsat_1_v5_gn_8_73421 Lactuca sativa HOM05D006754 ORTHO05D008403 4.0e-106 389.4 367 53.1
Gohir.D05G094600 Gossypium hirsutum HOM05D006754 ORTHO05D008403 9.0e-106 388.3 304 65.5
Duzib168G0850 Durio zibethinus HOM05D006754 ORTHO05D008403 1.2e-105 387.9 294 65.0
Sed0016816 Sechium edule HOM05D006754 ORTHO05D008403 3.8e-104 382.9 367 55.3
Nitab4.5_0000272g0070 Nicotiana tabacum HOM05D006754 ORTHO05D008403 2.7e-102 376.7 309 62.5
unitig_37.g12673 Utricularia gibba HOM05D006754 ORTHO05D008403 3.5e-102 376.3 371 54.4
Peaxi162Scf00122g00144 Petunia axillaris HOM05D006754 ORTHO05D008403 6.2e-99 365.5 409 50.4
MBI14_g12133_MAGBIO Magnolia biondii HOM05D006754 ORTHO05D008403 2.4e-98 363.6 438 51.8
ATR0752G045 Amborella trichopoda HOM05D006754 ORTHO05D008403 3.1e-98 363.2 330 57.0
CDE04G0725 Ceratophyllum demersum HOM05D006754 ORTHO05D008403 2.6e-97 360.1 370 50.3
CDE07G0060 Ceratophyllum demersum HOM05D006754 ORTHO05D008403 8.4e-96 355.1 363 49.6
SGA_v2.0_scaffold51G18718 Striga asiatica HOM05D006754 ORTHO05D008403 7.9e-94 348.6 375 49.6
Dinv22095 Davidia involucrata HOM05D006754 ORTHO05D008403 5.6e-92 342.4 293 60.1
Lalb_Chr01g0007611 Lupinus albus HOM05D006754 ORTHO05D008403 3.7e-91 339.7 431 47.8
Dinv09390 Davidia involucrata HOM05D006754 ORTHO05D008403 1.6e-86 324.3 202 77.7
Oeu004165.1 Olea europaea HOM05D006754 ORTHO05D008403 2.7e-86 323.6 309 56.6
TPR.G35751 Trifolium pratense HOM05D006754 ORTHO05D008403 4.2e-71 273.1 418 40.4
GSVIVG01024926001 Vitis vinifera HOM05D006754 ORTHO05D008403 3.0e-69 266.9 394 42.1
ECA236G3563 Erigeron canadensis HOM05D006754 ORTHO05D008403 5.5e-63 246.1 149 74.5
C03p13670 Brassica napus HOM05D006754 ORTHO05D008403 2.8e-51 207.2 141 71.6
BolC3t13816H Brassica oleracea HOM05D006754 ORTHO05D008403 2.8e-51 207.2 141 71.6
Pp3c1_41830 Physcomitrium patens HOM05D006754 ORTHO05D008403 2.2e-48 197.6 347 33.4
Mapoly0044s0017 Marchantia polymorpha HOM05D006754 ORTHO05D008403 7.5e-44 182.6 331 34.1
HPP92_027965 Vanilla planifolia HOM05D006754 ORTHO05D008403 1.6e-41 174.9 252 44.4
SMO356G0015 Selaginella moellendorffii HOM05D006754 ORTHO05D008403 2.7e-38 164.1 200 42.0
AagrBONN_evm.TU.Sc2ySwM_368.2585 Anthoceros agrestis HOM05D006754 ORTHO05D008403 6.1e-38 162.9 344 32.8
BcaB05g22514 Brassica carinata HOM05D006754 ORTHO05D008403 5.2e-37 159.8 157 52.9
Nn4g26458 Nelumbo nucifera HOM05D006754 ORTHO05D008403 5.7e-36 156.4 166 53.6
Aqoxy2G02265 Aquilegia oxysepala HOM05D006754 ORTHO05D008403 2.2e-35 154.5 222 41.9
MD11G1097300 Malus domestica HOM05D006754 ORTHO05D008403 5.6e-31 139.8 174 49.4
Dinv06263 Davidia involucrata HOM05D006754 ORTHO05D008403 2.1e-30 137.9 104 69.2
CBR_g46210 Chara braunii HOM05D006754 ORTHO05D008403 7.3e-23 112.8 197 34.5
HPP92_001678 Vanilla planifolia HOM05D006754 ORTHO05D008403 8.3e-19 99.4 192 33.9
SEGI_33641 Sequoiadendron giganteum HOM05D006754 ORTHO05D008403 7.5e-12 76.3 256 25.8
BcaC03g14007 Brassica carinata HOM05D006754 ORTHO05D008403 4.1e-10 70.5 94 46.8
Cre01.g049750 Chlamydomonas reinhardtii HOM05D006754 ORTHO05D008403 1.2e-09 68.9 215 27.9
C02p12450 Brassica napus HOM05D006754 ORTHO05D008403 1.6e-09 68.6 92 46.7


User provided reference genes

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