Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G1306 Fragaria x ananassa HOM05D005284 ORTHO05D006609 4.9e-168 594.3 290 100.0
FAN16G1000 Fragaria x ananassa HOM05D005284 ORTHO05D006609 4.3e-156 554.7 284 95.1
FvH4_3g11170 Fragaria vesca HOM05D005284 ORTHO05D006609 3.4e-153 545.0 315 87.0
FAN25G2940 Fragaria x ananassa HOM05D005284 ORTHO05D006609 3.3e-140 501.9 248 98.0
RcHm_v2.0_Chr5g0018081 Rosa chinensis HOM05D005284 ORTHO05D006609 6.4e-136 487.6 292 82.5
MD10G1243300 Malus domestica HOM05D005284 ORTHO05D006609 4.5e-113 411.8 313 69.6
Prupe.4G100600 Prunus persica HOM05D005284 ORTHO05D006609 4.5e-113 411.8 313 70.3
MD05G1265300 Malus domestica HOM05D005284 ORTHO05D006609 5.1e-109 398.3 283 71.7
CANSAT78G1346 Cannabis sativa HOM05D005284 ORTHO05D006609 1.9e-108 396.4 299 68.2
Cfa000771 Carpinus fangiana HOM05D005284 ORTHO05D006609 8.5e-104 380.9 279 69.2
Lj2C336G9 Lonicera japonica HOM05D005284 ORTHO05D006609 4.2e-103 378.6 271 68.3
DCAR_000834 Daucus carota HOM05D005284 ORTHO05D006609 7.2e-103 377.9 280 67.5
Atru.chr10.695 Acer truncatum HOM05D005284 ORTHO05D006609 2.1e-102 376.3 286 66.8
Gorai.011G006700 Gossypium raimondii HOM05D005284 ORTHO05D006609 1.8e-101 373.2 283 66.1
Gohir.D10G005900 Gossypium hirsutum HOM05D005284 ORTHO05D006609 2.3e-101 372.9 283 66.1
CiPaw.09G147600 Carya illinoinensis HOM05D005284 ORTHO05D006609 5.1e-101 371.7 279 67.7
Ciclev10016195m.g Citrus clementina HOM05D005284 ORTHO05D006609 1.9e-100 369.8 283 65.4
Gohir.A10G005900 Gossypium hirsutum HOM05D005284 ORTHO05D006609 4.3e-100 368.6 297 63.3
Rhsim13G0125000 Rhododendron simsii HOM05D005284 ORTHO05D006609 4.3e-100 368.6 279 66.7
Duzib235G1425 Durio zibethinus HOM05D005284 ORTHO05D006609 2.8e-99 365.9 283 65.7
vmacro03466 Vaccinium macrocarpon HOM05D005284 ORTHO05D006609 4.8e-99 365.2 300 61.7
Dinv04290 Davidia involucrata HOM05D005284 ORTHO05D006609 6.3e-99 364.8 279 65.9
Actinidia29265 Actinidia chinensis HOM05D005284 ORTHO05D006609 1.1e-98 364.0 283 65.0
Lsat_1_v5_gn_5_75320 Lactuca sativa HOM05D005284 ORTHO05D006609 1.8e-98 363.2 300 60.7
Sopen02g006280 Solanum pennellii HOM05D005284 ORTHO05D006609 1.2e-97 360.5 281 64.4
TWI38G1381 Tripterygium wilfordii HOM05D005284 ORTHO05D006609 1.5e-97 360.1 319 60.2
MSTRG.7559 Avicennia marina HOM05D005284 ORTHO05D006609 2.6e-97 359.4 314 59.2
Cpa.g.sc489.2 Carica papaya HOM05D005284 ORTHO05D006609 2.6e-97 359.4 282 64.5
CAN.G39.30 Capsicum annuum HOM05D005284 ORTHO05D006609 5.9e-97 358.2 281 63.3
TAR626G0222 Trochodendron aralioides HOM05D005284 ORTHO05D006609 7.7e-97 357.8 282 63.5
Potri.011G157500 Populus trichocarpa HOM05D005284 ORTHO05D006609 1.0e-96 357.5 279 64.2
Thecc.06G009000 Theobroma cacao HOM05D005284 ORTHO05D006609 1.7e-96 356.7 296 63.9
QL05p064527 Quercus lobata HOM05D005284 ORTHO05D006609 3.8e-96 355.5 275 66.5
Migut.M01924 Erythranthe guttata HOM05D005284 ORTHO05D006609 1.1e-95 354.0 292 62.3
HanXRQChr12g0359761 Helianthus annuus HOM05D005284 ORTHO05D006609 7.2e-95 351.3 298 58.4
Cc08_g07170 Coffea canephora HOM05D005284 ORTHO05D006609 3.6e-94 349.0 280 62.1
CARHR178630 Cardamine hirsuta HOM05D005284 ORTHO05D006609 7.9e-94 347.8 283 63.6
Sed0002797 Sechium edule HOM05D005284 ORTHO05D006609 3.9e-93 345.5 279 62.4
Eucgr.D01014 Eucalyptus grandis HOM05D005284 ORTHO05D006609 6.7e-93 344.7 291 61.2
Glyma.05G124100 Glycine max HOM05D005284 ORTHO05D006609 1.5e-92 343.6 306 58.8
PSO541G1959 Papaver somniferum HOM05D005284 ORTHO05D006609 1.5e-92 343.6 281 62.6
PSO675G4367 Papaver somniferum HOM05D005284 ORTHO05D006609 1.5e-92 343.6 281 62.6
C09p26950 Brassica napus HOM05D005284 ORTHO05D006609 3.3e-92 342.4 282 62.1
BolC9t55580H Brassica oleracea HOM05D005284 ORTHO05D006609 3.3e-92 342.4 282 62.1
Lalb_Chr12g0208701 Lupinus albus HOM05D005284 ORTHO05D006609 1.7e-91 340.1 296 60.1
A09p21140 Brassica napus HOM05D005284 ORTHO05D006609 2.2e-91 339.7 282 61.7
BraA09t37720Z Brassica rapa HOM05D005284 ORTHO05D006609 2.2e-91 339.7 282 61.7
SalBow8G0467 Salvia bowleyana HOM05D005284 ORTHO05D006609 4.8e-91 338.6 318 55.7
THA.LOC104812070 Tarenaya hassleriana HOM05D005284 ORTHO05D006609 6.3e-91 338.2 289 60.9
BcaC04g21829 Brassica carinata HOM05D005284 ORTHO05D006609 8.2e-91 337.8 282 62.1
arahy.Tifrunner.gnm1.ann1.06Y4PY Arachis hypogaea HOM05D005284 ORTHO05D006609 1.4e-90 337.0 319 57.7
BraA06t27590Z Brassica rapa HOM05D005284 ORTHO05D006609 1.4e-90 337.0 282 62.4
Thhalv10000956m.g Eutrema salsugineum HOM05D005284 ORTHO05D006609 1.4e-90 337.0 283 61.8
A06p47190 Brassica napus HOM05D005284 ORTHO05D006609 1.8e-90 336.7 282 62.4
Glyma.08G079300 Glycine max HOM05D005284 ORTHO05D006609 1.8e-90 336.7 277 62.1
MELO3C007049.2 Cucumis melo HOM05D005284 ORTHO05D006609 3.1e-90 335.9 279 60.6
Aa31LG9G8740 Aethionema arabicum HOM05D005284 ORTHO05D006609 4.1e-90 335.5 283 61.8
Phvul.002G201500 Phaseolus vulgaris HOM05D005284 ORTHO05D006609 5.3e-90 335.1 276 62.7
COL.COLO4_26880 Corchorus olitorius HOM05D005284 ORTHO05D006609 6.9e-90 334.7 326 56.7
Sp2g09280 Schrenkiella parvula HOM05D005284 ORTHO05D006609 9.1e-90 334.3 281 61.6
Carub.0008s0404 Capsella rubella HOM05D005284 ORTHO05D006609 1.2e-89 334.0 283 61.1
Psat7g094280 Pisum sativum HOM05D005284 ORTHO05D006609 1.2e-89 334.0 292 59.6
Ah.01g003600 Amaranthus hybridus HOM05D005284 ORTHO05D006609 1.5e-89 333.6 284 59.9
BcaB07g30944 Brassica carinata HOM05D005284 ORTHO05D006609 2.6e-89 332.8 282 62.1
CsaV3_6G052590 Cucumis sativus L. HOM05D005284 ORTHO05D006609 3.4e-89 332.4 278 60.4
Medtr4g094452 Medicago truncatula HOM05D005284 ORTHO05D006609 3.4e-89 332.4 276 60.1
Nn7g37791 Nelumbo nucifera HOM05D005284 ORTHO05D006609 3.4e-89 332.4 281 62.3
BcaC06g34553 Brassica carinata HOM05D005284 ORTHO05D006609 7.7e-89 331.3 282 62.1
C07p27240 Brassica napus HOM05D005284 ORTHO05D006609 7.7e-89 331.3 282 62.1
BolC7t43252H Brassica oleracea HOM05D005284 ORTHO05D006609 7.7e-89 331.3 282 62.1
Lj4g0006881 Lotus japonicus HOM05D005284 ORTHO05D006609 7.7e-89 331.3 299 58.9
AL8G15400 Arabidopsis lyrata HOM05D005284 ORTHO05D006609 3.8e-88 328.9 282 61.3
BcaC06g31615 Brassica carinata HOM05D005284 ORTHO05D006609 3.8e-88 328.9 278 61.2
SalBow3G1375 Salvia bowleyana HOM05D005284 ORTHO05D006609 6.5e-88 328.2 309 55.3
VMungo0251G0080 Vigna mungo HOM05D005284 ORTHO05D006609 6.5e-88 328.2 303 58.4
Ca_18306_v3 Cicer arietinum L. HOM05D005284 ORTHO05D006609 8.5e-88 327.8 284 60.2
CDE02G0074 Ceratophyllum demersum HOM05D005284 ORTHO05D006609 1.1e-87 327.4 269 58.7
Nitab4.5_0000607g0120 Nicotiana tabacum HOM05D005284 ORTHO05D006609 9.4e-87 324.3 393 46.6
TPR.G23781 Trifolium pratense HOM05D005284 ORTHO05D006609 2.7e-86 322.8 263 60.8
EL10Ac9g22329 Beta vulgaris HOM05D005284 ORTHO05D006609 3.6e-86 322.4 282 59.6
CDE05G2614 Ceratophyllum demersum HOM05D005284 ORTHO05D006609 7.9e-86 321.2 290 54.8
ECA234G4512 Erigeron canadensis HOM05D005284 ORTHO05D006609 6.7e-85 318.2 261 59.8
Aqoxy1G01504 Aquilegia oxysepala HOM05D005284 ORTHO05D006609 7.4e-84 314.7 285 56.5
Aqoxy1G01508 Aquilegia oxysepala HOM05D005284 ORTHO05D006609 7.4e-84 314.7 285 56.5
Oeu000506.1 Olea europaea HOM05D005284 ORTHO05D006609 2.2e-83 313.2 360 48.1
Nitab4.5_0000100g0010 Nicotiana tabacum HOM05D005284 ORTHO05D006609 1.8e-82 310.1 386 46.1
ATR0763G041 Amborella trichopoda HOM05D005284 ORTHO05D006609 3.1e-82 309.3 279 57.3
Manes.14G126000 Manihot esculenta HOM05D005284 ORTHO05D006609 1.3e-80 303.9 237 64.6
MBI18_g27137_MAGBIO Magnolia biondii HOM05D005284 ORTHO05D006609 1.1e-79 300.8 324 50.3
Sabra11G0142700 Salix brachista HOM05D005284 ORTHO05D006609 1.8e-77 293.5 235 62.1
SEGI_24201 Sequoiadendron giganteum HOM05D005284 ORTHO05D006609 2.3e-77 293.1 284 53.9
Sc04g0004240 Simmondsia chinensis HOM05D005284 ORTHO05D006609 8.8e-77 291.2 238 61.8
Peaxi162Scf00155g00513 Petunia axillaris HOM05D005284 ORTHO05D006609 6.3e-75 285.0 294 53.1
HPP92_000943 Vanilla planifolia HOM05D005284 ORTHO05D006609 1.8e-74 283.5 276 53.3
unitig_748.g7349 Utricularia gibba HOM05D005284 ORTHO05D006609 3.1e-74 282.7 270 56.7
Os03g0780900 Oryza sativa ssp. japonica HOM05D005284 ORTHO05D006609 8.5e-72 274.6 310 47.7
Zm00001eb059610 Zea mays HOM05D005284 ORTHO05D006609 8.5e-72 274.6 277 52.0
SGA_v2.0_scaffold1G00293 Striga asiatica HOM05D006189 ORTHO05D007765 2.1e-70 270.0 239 58.6
SMO364G0300 Selaginella moellendorffii HOM05D005284 ORTHO05D006609 2.0e-68 263.5 262 53.4
GSVIVG01021778001 Vitis vinifera HOM05D005284 ORTHO05D006609 6.3e-67 258.5 158 77.2
Dinv04294 Davidia involucrata HOM05D005284 ORTHO05D006609 4.7e-62 242.3 145 77.9
Mapoly0083s0001 Marchantia polymorpha HOM05D005284 ORTHO05D006609 2.3e-61 240.0 287 46.7
AT5G44450 Arabidopsis thaliana HOM05D005284 ORTHO05D006609 9.2e-58 228.0 211 55.9
Solyc02g021700.4 Solanum lycopersicum HOM05D005284 ORTHO05D006609 5.0e-56 222.2 188 59.0
ClCG01G025350 Citrullus lanatus HOM05D005284 ORTHO05D006609 6.6e-56 221.9 323 40.2
CBR_g19259 Chara braunii HOM05D005284 ORTHO05D006609 2.1e-54 216.9 269 45.4
PGR083G0243 Punica granatum HOM05D005284 ORTHO05D006609 1.2e-52 211.1 224 48.7
AUR62042202 Chenopodium quinoa HOM05D005284 ORTHO05D006609 3.4e-52 209.5 230 49.1
AUR62033057 Chenopodium quinoa HOM05D005284 ORTHO05D006609 1.0e-48 198.0 189 54.5
MCO11G684 Micromonas commoda HOM05D005284 ORTHO05D006609 3.9e-48 196.1 254 42.1
Cre06.g274400 Chlamydomonas reinhardtii HOM05D005284 ORTHO05D006609 2.6e-44 183.3 249 40.2
PRCOL_00002523 Prasinoderma coloniale HOM05D005284 ORTHO05D006609 4.9e-43 179.1 256 41.0
Thecc.06G010000 Theobroma cacao HOM05D005284 ORTHO05D006609 1.3e-40 171.0 165 54.5
AagrBONN_evm.TU.Sc2ySwM_344.3509 Anthoceros agrestis HOM05D005284 ORTHO05D006609 6.8e-37 158.7 200 44.0
vmacro21870 Vaccinium macrocarpon HOM05D005284 ORTHO05D006609 1.9e-31 140.6 90 74.4
Haze_05942 Corylus avellana HOM05D005284 ORTHO05D006609 8.1e-30 135.2 91 73.6
Cfa017779 Carpinus fangiana HOM05D005284 ORTHO05D006609 2.6e-28 130.2 93 69.9
PGSC0003DMG400009806 Solanum tuberosum HOM05D005284 ORTHO05D006609 2.4e-26 123.6 94 66.0
Hma1.2p1_0721F.1_g208670 Hydrangea macrophylla HOM05D005284 ORTHO05D006609 5.4e-26 122.5 104 58.7
Hma1.2p1_0721F.1_g208680 Hydrangea macrophylla HOM05D005284 ORTHO05D006609 1.2e-25 121.3 92 62.0
Thecc.06G009200 Theobroma cacao HOM05D005284 ORTHO05D006609 2.3e-24 117.1 108 59.3
Thecc.06G009400 Theobroma cacao HOM05D005284 ORTHO05D006609 1.6e-22 110.9 93 62.4
Thecc.06G009800 Theobroma cacao HOM05D005284 ORTHO05D006609 3.6e-22 109.8 96 61.5
Dinv23919 Davidia involucrata HOM05D005284 ORTHO05D006609 4.7e-22 109.4 62 75.8
Dinv09223 Davidia involucrata HOM05D005284 ORTHO05D006609 4.0e-21 106.3 95 61.1
Aa31LG2G17800 Aethionema arabicum HOM05D005284 ORTHO05D006609 5.2e-21 105.9 74 64.9
PGSC0003DMG400015105 Solanum tuberosum HOM05D005284 ORTHO05D006609 8.9e-21 105.1 55 76.4
Sabra16G0312400 Salix brachista HOM05D005284 ORTHO05D006609 4.4e-20 102.8 72 68.1
CARHR114890 Cardamine hirsuta HOM05D005284 ORTHO05D006609 4.9e-19 99.4 68 69.1
CSS0000752 Camellia sinensis var. sinensis HOM05D005284 ORTHO05D006609 8.4e-19 98.6 51 86.3
BcaB07g30524 Brassica carinata HOM05D005284 ORTHO05D006609 9.3e-18 95.1 62 67.7
GSVIVG01037925001 Vitis vinifera HOM05D005284 ORTHO05D006609 2.1e-17 94.0 76 61.8
Lalb_Chr13g0291531 Lupinus albus HOM05D005284 ORTHO05D006609 6.0e-17 92.4 108 49.1
Pp3c22_8670 Physcomitrium patens HOM05D005284 ORTHO05D006609 1.0e-16 91.7 100 46.0
Nitab4.5_0000637g0040 Nicotiana tabacum HOM05D005284 ORTHO05D006609 1.3e-11 74.7 46 71.7
Nitab4.5_0001154g0100 Nicotiana tabacum HOM05D005284 ORTHO05D006609 2.2e-11 73.9 86 47.7
CSS0004293 Camellia sinensis var. sinensis HOM05D005284 ORTHO05D006609 2.9e-11 73.6 38 78.9
Haze_05939 Corylus avellana HOM05D005284 ORTHO05D006609 8.4e-11 72.0 42 83.3
Prupe.4G100800 Prunus persica HOM05D005284 ORTHO05D006609 8.4e-11 72.0 43 79.1
Glyma.04G136150 Glycine max HOM05D005284 ORTHO05D006609 1.4e-10 71.2 36 72.2
A07p10120 Brassica napus HOM05D005284 ORTHO05D024396 1.3e-08 64.7 33 72.7
BraA07t28805Z Brassica rapa HOM05D005284 ORTHO05D024396 1.3e-08 64.7 33 72.7


User provided reference genes

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