Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G1192 Fragaria x ananassa HOM05D003782 ORTHO05D004361 0.0e+00 1620.5 927 100.0
FAN16G0824 Fragaria x ananassa HOM05D003782 ORTHO05D004361 0.0e+00 1559.7 929 97.3
FAN11G2511 Fragaria x ananassa HOM05D003782 ORTHO05D004361 0.0e+00 1541.2 931 96.1
FAN25G2149 Fragaria x ananassa HOM05D003782 ORTHO05D004361 0.0e+00 1540.8 929 96.0
FvH4_3g04800 Fragaria vesca HOM05D003782 ORTHO05D004361 0.0e+00 1527.3 929 95.6
RcHm_v2.0_Chr5g0007891 Rosa chinensis HOM05D003782 ORTHO05D004361 0.0e+00 1398.6 931 87.1
Prupe.4G043300 Prunus persica HOM05D003782 ORTHO05D004361 0.0e+00 1157.5 942 72.6
MD10G1297100 Malus domestica HOM05D003782 ORTHO05D004361 0.0e+00 1106.7 944 71.0
MD05G1316600 Malus domestica HOM05D003782 ORTHO05D004361 0.0e+00 1099.7 944 70.2
Cfa000411 Carpinus fangiana HOM05D003782 ORTHO05D004361 1.0e-264 917.1 969 57.8
QL05p039400 Quercus lobata HOM05D003782 ORTHO05D004361 8.3e-262 907.5 972 57.8
Haze_06504 Corylus avellana HOM05D003782 ORTHO05D004361 1.2e-260 903.7 956 57.8
CiPaw.09G056900 Carya illinoinensis HOM05D003782 ORTHO05D004361 5.8e-255 884.8 975 56.1
CiPaw.10G046700 Carya illinoinensis HOM05D003782 ORTHO05D004361 4.4e-247 858.6 847 59.0
Manes.17G043000 Manihot esculenta HOM05D003782 ORTHO05D004361 6.0e-244 848.2 981 53.8
GSVIVG01006449001 Vitis vinifera HOM05D003782 ORTHO05D004361 8.6e-243 844.3 994 53.8
Dinv07533 Davidia involucrata HOM05D003782 ORTHO05D004361 7.3e-234 814.7 970 53.4
Potri.011G049300 Populus trichocarpa HOM05D003782 ORTHO05D004361 6.2e-233 811.6 987 52.4
Manes.16G025200 Manihot esculenta HOM05D003782 ORTHO05D004361 3.1e-232 809.3 986 52.1
Atru.chr10.1947 Acer truncatum HOM05D003782 ORTHO05D004361 4.0e-232 808.9 1007 52.5
Hma1.2p1_0881F.1_g231940 Hydrangea macrophylla HOM05D003782 ORTHO05D004361 6.8e-232 808.1 977 52.9
CANSAT35G1194 Cannabis sativa HOM05D003782 ORTHO05D004361 3.2e-229 799.3 972 53.2
CSS0005863 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 1.0e-227 794.3 974 51.8
Ciclev10014178m.g Citrus clementina HOM05D003782 ORTHO05D004361 5.1e-227 792.0 986 53.8
Glyma.13G181800 Glycine max HOM05D003782 ORTHO05D004361 8.7e-227 791.2 967 53.1
Glyma.07G194500 Glycine max HOM05D003782 ORTHO05D004361 3.3e-226 789.3 965 53.1
Sabra11G0033700 Salix brachista HOM05D003782 ORTHO05D004361 3.6e-225 785.8 998 51.1
Actinidia05612 Actinidia chinensis HOM05D003782 ORTHO05D004361 4.8e-225 785.4 978 51.6
Potri.004G039900 Populus trichocarpa HOM05D003782 ORTHO05D004361 1.1e-224 784.3 994 51.0
Lj4g0027811 Lotus japonicus HOM05D003782 ORTHO05D004361 1.8e-224 783.5 964 51.3
ClCG03G005890 Citrullus lanatus HOM05D003782 ORTHO05D004361 1.1e-221 774.2 998 49.9
Thecc.06G191300 Theobroma cacao HOM05D003782 ORTHO05D004361 4.2e-221 772.3 993 52.4
arahy.Tifrunner.gnm1.ann1.1A97AW Arachis hypogaea HOM05D003782 ORTHO05D004361 1.6e-220 770.4 977 52.1
arahy.Tifrunner.gnm1.ann1.2GZF7Z Arachis hypogaea HOM05D003782 ORTHO05D004361 7.9e-220 768.1 977 51.8
TWI38G1173 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 1.7e-219 766.9 971 51.9
Nitab4.5_0011233g0010 Nicotiana tabacum HOM05D003782 ORTHO05D004361 3.0e-219 766.1 1014 48.7
TPR.G12054 Trifolium pratense HOM05D003782 ORTHO05D004361 5.1e-219 765.4 986 56.8
Phvul.002G226800 Phaseolus vulgaris HOM05D003782 ORTHO05D004361 6.6e-219 765.0 965 51.7
CsaV3_1G012120 Cucumis sativus L. HOM05D003782 ORTHO05D004361 1.5e-218 763.8 978 50.6
VMungo0251G3691 Vigna mungo HOM05D003782 ORTHO05D004361 9.6e-218 761.1 955 51.7
CSS0007425 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 2.4e-216 756.5 951 51.2
Duzib160G0524 Durio zibethinus HOM05D003782 ORTHO05D004361 2.4e-216 756.5 963 52.5
CAN.G1627.12 Capsicum annuum HOM05D003782 ORTHO05D004361 5.3e-216 755.4 1026 48.2
Lalb_Chr05g0218361 Lupinus albus HOM05D003782 ORTHO05D004361 3.4e-215 752.7 995 49.9
Peaxi162Scf00379g00065 Petunia axillaris HOM05D003782 ORTHO05D004361 1.7e-214 750.4 915 50.8
Gohir.D06G130600 Gossypium hirsutum HOM05D003782 ORTHO05D004361 6.4e-214 748.4 993 50.3
Sed0005800 Sechium edule HOM05D003782 ORTHO05D004361 1.4e-213 747.3 1011 47.4
vmacro03847 Vaccinium macrocarpon HOM05D003782 ORTHO05D004361 4.6e-212 742.3 1069 46.8
Medtr4g089015 Medicago truncatula HOM05D003782 ORTHO05D004361 1.3e-211 740.7 987 55.4
TAR624G0538 Trochodendron aralioides HOM05D003782 ORTHO05D003724 1.8e-211 740.3 858 53.1
Dinv40534 Davidia involucrata HOM05D003782 ORTHO05D004361 3.0e-211 739.6 790 55.8
Cc02_g13030 Coffea canephora HOM05D003782 ORTHO05D004361 2.5e-210 736.5 966 49.2
MBI17_g03751_MAGBIO Magnolia biondii HOM05D003782 ORTHO05D004361 3.3e-210 736.1 978 49.0
Solyc02g078560.4 Solanum lycopersicum HOM05D003782 ORTHO05D004361 4.3e-210 735.7 898 51.1
PGR042G3934 Punica granatum HOM05D003782 ORTHO05D004361 7.4e-210 734.9 975 49.0
Sopen02g023410 Solanum pennellii HOM05D003782 ORTHO05D004361 2.1e-209 733.4 1039 47.5
Gohir.A06G125300 Gossypium hirsutum HOM05D003782 ORTHO05D004361 4.0e-208 729.2 964 50.1
Psat7g113440 Pisum sativum HOM05D003782 ORTHO05D004361 1.3e-206 724.2 1018 52.9
Lalb_Chr09g0327561 Lupinus albus HOM05D003782 ORTHO05D004361 1.8e-203 713.8 988 49.0
Eucgr.E03352 Eucalyptus grandis HOM05D003782 ORTHO05D004361 2.5e-202 709.9 994 47.0
Lj1C1208G1 Lonicera japonica HOM05D003782 ORTHO05D004361 7.4e-202 708.4 952 49.3
COL.COLO4_31507 Corchorus olitorius HOM05D003782 ORTHO05D004361 4.8e-201 705.7 1040 48.3
Sc05g0007840 Simmondsia chinensis HOM05D003782 ORTHO05D004361 6.3e-201 705.3 970 49.0
RhsimUnG0044200 Rhododendron simsii HOM05D003782 ORTHO05D004361 1.3e-198 697.6 1166 43.1
Ca_18527_v3 Cicer arietinum L. HOM05D003782 ORTHO05D004361 1.1e-197 694.5 971 47.9
DCAR_008048 Daucus carota HOM05D003782 ORTHO05D004361 1.9e-197 693.7 869 50.1
MELO3C002586.2 Cucumis melo HOM05D003782 ORTHO05D004361 5.5e-197 692.2 1051 45.7
Gohir.A06G209800 Gossypium hirsutum HOM05D003782 ORTHO05D004361 1.1e-194 684.5 985 48.1
PSO210G1870 Papaver somniferum HOM05D003782 ORTHO05D004361 1.1e-194 684.5 1007 53.1
Gorai.010G152400 Gossypium raimondii HOM05D003782 ORTHO05D004361 9.7e-194 681.4 993 47.7
Lsat_1_v5_gn_7_19080 Lactuca sativa HOM05D003782 ORTHO05D004361 6.3e-193 678.7 945 47.6
Aqoxy4G01073 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 5.3e-192 675.6 963 47.6
Gohir.D06G211200 Gossypium hirsutum HOM05D003782 ORTHO05D004361 7.7e-191 671.8 990 47.0
Gorai.010G255000 Gossypium raimondii HOM05D003782 ORTHO05D004361 7.7e-191 671.8 990 47.0
Nitab4.5_0003668g0120 Nicotiana tabacum HOM05D003782 ORTHO05D004361 7.7e-191 671.8 1018 45.1
PSO832G0898 Papaver somniferum HOM05D003782 ORTHO05D004361 7.2e-189 665.2 1006 52.5
HanXRQChr04g0124181 Helianthus annuus HOM05D003782 ORTHO05D004361 7.9e-188 661.8 965 45.4
HanXRQChr08g0209481 Helianthus annuus HOM05D003782 ORTHO05D004361 8.8e-187 658.3 964 45.7
MSTRG.14684 Avicennia marina HOM05D003782 ORTHO05D004361 1.5e-186 657.5 877 47.8
CDE02G2556 Ceratophyllum demersum HOM05D003782 ORTHO05D004361 7.4e-186 655.2 989 45.9
Migut.H01508 Erythranthe guttata HOM05D003782 ORTHO05D004361 6.3e-185 652.1 820 50.2
AL1G22040 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 4.5e-183 646.0 970 44.8
Hund23698 Selenicereus undatus HOM05D003782 ORTHO05D004361 4.2e-181 639.4 963 45.9
CARHR011250 Cardamine hirsuta HOM05D003782 ORTHO05D004361 5.5e-181 639.0 971 44.6
AT1G11060 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 9.4e-181 638.3 969 44.4
Sp1g09750 Schrenkiella parvula HOM05D003782 ORTHO05D004361 9.4e-181 638.3 966 46.1
Sed0026382 Sechium edule HOM05D003782 ORTHO05D004361 3.9e-179 632.9 964 43.6
Carub.0001s1062 Capsella rubella HOM05D003782 ORTHO05D004361 5.2e-179 632.5 977 44.8
Lj6g0013812 Lotus japonicus HOM05D003782 ORTHO05D004361 9.7e-178 628.2 822 48.9
arahy.Tifrunner.gnm1.ann1.HPML60 Arachis hypogaea HOM05D003782 ORTHO05D004361 3.7e-177 626.3 909 45.5
SalBow8G2382 Salvia bowleyana HOM05D003782 ORTHO05D004361 4.8e-177 625.9 883 47.1
BraA06t23977Z Brassica rapa HOM05D003782 ORTHO05D004361 1.1e-176 624.8 973 45.4
Thhalv10006765m.g Eutrema salsugineum HOM05D003782 ORTHO05D004361 1.8e-176 624.0 969 44.2
C05p09350 Brassica napus HOM05D003782 ORTHO05D004361 5.3e-176 622.5 972 45.1
Oeu014694.1 Olea europaea HOM05D003782 ORTHO05D004361 2.6e-175 620.2 904 45.5
A06p07760 Brassica napus HOM05D003782 ORTHO05D004361 3.5e-175 619.8 973 45.2
C08p48360 Brassica napus HOM05D003782 ORTHO05D004361 3.5e-175 619.8 956 45.4
BolC8t52375H Brassica oleracea HOM05D003782 ORTHO05D004361 3.5e-175 619.8 956 45.4
arahy.Tifrunner.gnm1.ann1.AS4EHM Arachis hypogaea HOM05D003782 ORTHO05D004361 4.5e-175 619.4 911 44.7
Aa31LG1G3850 Aethionema arabicum HOM05D003782 ORTHO05D004361 1.7e-174 617.5 996 44.0
SGA_v2.0_scaffold49G18282 Striga asiatica HOM05D003782 ORTHO05D004361 1.9e-173 614.0 889 46.1
EL10Ac8g20337 Beta vulgaris HOM05D003782 ORTHO05D004361 2.5e-173 613.6 984 43.7
ATR0680G033 Amborella trichopoda HOM05D003782 ORTHO05D004361 1.6e-172 610.9 990 42.7
BolC5t29675H Brassica oleracea HOM05D003782 ORTHO05D004361 4.7e-172 609.4 1000 43.9
BcaC05g24980 Brassica carinata HOM05D003782 ORTHO05D004361 1.0e-171 608.2 856 46.5
BraA09t41812Z Brassica rapa HOM05D003782 ORTHO05D004361 1.8e-171 607.4 1014 43.8
Sp2g03490 Schrenkiella parvula HOM05D003782 ORTHO05D004361 1.3e-169 601.3 958 44.1
AUR62014785 Chenopodium quinoa HOM05D003782 ORTHO05D004361 4.8e-169 599.4 882 45.5
A09p64830 Brassica napus HOM05D003782 ORTHO05D004361 1.1e-168 598.2 1019 42.2
Ah.14g089260 Amaranthus hybridus HOM05D003782 ORTHO05D004361 7.0e-168 595.5 970 43.9
AUR62016973 Chenopodium quinoa HOM05D003782 ORTHO05D004361 1.3e-166 591.3 862 45.1
AT1G61030 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 2.5e-165 587.0 959 44.1
AL2G15410 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 7.2e-165 585.5 958 44.3
Sabra04G0024600 Salix brachista HOM05D003782 ORTHO05D004361 6.1e-164 582.4 872 47.0
BcaC07g41789 Brassica carinata HOM05D003782 ORTHO05D004361 1.8e-160 570.9 981 43.1
Carub.0002s0417 Capsella rubella HOM05D003782 ORTHO05D004361 9.1e-160 568.5 953 42.2
Lalb_Chr20g0122011 Lupinus albus HOM05D003782 ORTHO05D004361 2.0e-159 567.4 805 46.3
SalBow7G0940 Salvia bowleyana HOM05D003782 ORTHO05D004361 2.0e-159 567.4 859 44.4
Aa31LG2G9560 Aethionema arabicum HOM05D003782 ORTHO05D004361 4.5e-159 566.2 935 44.3
SalBow7G0271 Salvia bowleyana HOM05D003782 ORTHO05D004361 5.9e-159 565.8 859 44.2
HPP92_014533 Vanilla planifolia HOM05D003782 ORTHO05D004361 2.3e-155 553.9 984 40.8
CARHR052160 Cardamine hirsuta HOM05D003782 ORTHO05D004361 2.8e-153 547.0 966 42.4
Os10g0497000 Oryza sativa ssp. japonica HOM05D003782 ORTHO05D004361 8.3e-153 545.4 834 42.8
Zm00001eb220930 Zea mays HOM05D003782 ORTHO05D004361 1.6e-148 531.2 866 42.1
Duzib235G1248 Durio zibethinus HOM05D003782 ORTHO05D004361 1.7e-145 521.2 994 42.1
Ah.09g235740 Amaranthus hybridus HOM05D003782 ORTHO05D004361 1.2e-143 515.0 987 39.2
Duzib192G0241 Durio zibethinus HOM05D003782 ORTHO05D004361 6.6e-142 509.2 1000 42.0
FAN07G0886 Fragaria x ananassa HOM05D003782 ORTHO05D004361 9.2e-136 488.8 291 86.9
Migut.M01185 Erythranthe guttata HOM05D003782 ORTHO05D004361 1.4e-123 448.4 887 38.6
unitig_26.g9369 Utricularia gibba HOM05D003782 ORTHO05D004361 9.6e-117 425.6 842 39.4
Mapoly0014s0099 Marchantia polymorpha HOM05D003782 ORTHO05D004361 7.1e-112 409.5 890 35.5
Pp3c9_20340 Physcomitrium patens HOM05D003782 ORTHO05D004361 1.1e-104 385.6 994 33.0
Pp3c9_20349 Physcomitrium patens HOM05D003782 ORTHO05D004361 1.1e-104 385.6 994 33.0
Zm00001eb044640 Zea mays HOM05D003782 ORTHO05D004361 2.0e-98 364.8 684 38.5
Cpa.g.sc27.74 Carica papaya HOM05D003782 ORTHO05D004361 3.4e-98 364.0 379 57.8
ECA236G4595 Erigeron canadensis HOM05D003782 ORTHO05D004361 6.0e-95 353.2 590 43.1
SMO169G0190 Selaginella moellendorffii HOM05D003782 ORTHO05D004361 5.6e-93 346.7 826 33.5
Aqoxy6G00197 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 2.8e-92 344.4 311 60.8
Lj6g0001672 Lotus japonicus HOM05D003782 ORTHO05D004361 1.0e-78 299.3 306 59.2
CBR_g19729 Chara braunii HOM05D003782 ORTHO05D004361 9.4e-72 276.2 980 27.7
SEGI_34470 Sequoiadendron giganteum HOM05D003782 ORTHO05D004361 1.4e-64 252.3 259 56.8
Oeu043706.1 Olea europaea HOM05D003782 ORTHO05D004361 1.3e-60 239.2 317 49.5
SHI01818 Sapria himalayana HOM05D003782 ORTHO05D004361 1.4e-59 235.7 468 38.7
CSS0036804 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 9.1e-59 233.0 425 41.6
Lj6g0027699 Lotus japonicus HOM05D003782 ORTHO05D004361 2.8e-52 211.5 258 46.5
FAN28G2813 Fragaria x ananassa HOM05D003782 ORTHO05D004361 5.0e-49 200.7 537 40.8
Sabra04G0024500 Salix brachista HOM05D003782 ORTHO05D004361 5.5e-48 197.2 140 74.3
TWI12G0412 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 8.0e-39 166.8 162 60.5
ECA236G3594 Erigeron canadensis HOM05D003782 ORTHO05D004361 7.5e-37 160.2 224 48.7
TWI12G0828 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 1.6e-34 152.5 163 57.1
SEGI_13110 Sequoiadendron giganteum HOM05D003782 ORTHO05D004361 5.9e-34 150.6 208 42.8
BcaC05g24978 Brassica carinata HOM05D003782 ORTHO05D004361 1.5e-32 146.0 206 49.0
Cpa.g.sc27.75 Carica papaya HOM05D003782 ORTHO05D004361 2.5e-32 145.2 112 72.3
Zm00001eb006190 Zea mays HOM05D003782 ORTHO05D004361 2.3e-30 138.7 156 46.8
arahy.Tifrunner.gnm1.ann1.M5G8HU Arachis hypogaea HOM05D003782 ORTHO05D004361 3.5e-26 124.8 90 68.9
arahy.Tifrunner.gnm1.ann1.04J95Q Arachis hypogaea HOM05D003782 ORTHO05D004361 1.3e-25 122.9 117 54.7
MD09G1213100 Malus domestica HOM05D003782 ORTHO05D004361 1.1e-22 113.2 72 76.4
arahy.Tifrunner.gnm1.ann1.S76ADD Arachis hypogaea HOM05D001687 ORTHO05D001608 8.9e-22 110.2 81 67.9
Zm00001eb432110 Zea mays HOM05D003782 ORTHO05D004361 3.7e-20 104.8 89 59.6
VMungo0331G2027 Vigna mungo HOM05D003782 ORTHO05D004361 8.3e-20 103.6 79 69.6
QL05p013418 Quercus lobata HOM05D003782 ORTHO05D004361 3.2e-19 101.7 57 91.2
Zm00001eb335960 Zea mays HOM05D003782 ORTHO05D004361 9.2e-19 100.1 118 46.6
Zm00001eb179180 Zea mays HOM05D003782 ORTHO05D004361 1.6e-18 99.4 89 57.3
arahy.Tifrunner.gnm1.ann1.IMK82Y Arachis hypogaea HOM05D003782 ORTHO05D004361 3.5e-18 98.2 73 67.1
VMungo0251G1485 Vigna mungo HOM05D003782 ORTHO05D004361 7.8e-18 97.1 61 80.3
arahy.Tifrunner.gnm1.ann1.R5EEB5 Arachis hypogaea HOM05D003782 ORTHO05D004361 2.5e-16 92.0 63 66.7
Nn1g04009 Nelumbo nucifera HOM05D003782 ORTHO05D004361 3.3e-16 91.7 91 56.0
CSS0006007 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 1.6e-15 89.4 60 81.7
TAR626G0244 Trochodendron aralioides HOM05D003782 ORTHO05D004361 2.9e-12 78.6 60 65.0
Zm00001eb208870 Zea mays HOM05D000229 ORTHO05D004361 1.9e-11 75.9 126 40.5
CARHR034020 Cardamine hirsuta HOM05D003782 ORTHO05D004361 3.2e-11 75.1 82 50.0
SHI01816 Sapria himalayana HOM05D005377 ORTHO05D003034 7.1e-11 73.9 112 46.4
QL11p045598 Quercus lobata HOM05D005703 ORTHO05D006643 1.6e-10 72.8 84 56.0
Zm00001eb174580 Zea mays HOM05D003782 ORTHO05D004361 6.0e-10 70.9 60 58.3
arahy.Tifrunner.gnm1.ann1.IG0W9M Arachis hypogaea HOM05D003782 ORTHO05D004361 5.1e-09 67.8 95 40.0
Zm00001eb032810 Zea mays HOM05D003782 ORTHO05D004361 1.5e-08 66.2 60 53.3
CSS0046083 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 4.3e-08 64.7 147 43.5
Glyma.04G160500 Glycine max HOM05D003782 ORTHO05D004361 6.2e-07 60.8 91 41.8
Zm00001eb274810 Zea mays HOM05D003782 ORTHO05D004361 6.2e-07 60.8 48 62.5
CSS0040150 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 1.8e-06 59.3 67 52.2
MCO02G174 Micromonas commoda HOM05D003782 ORTHO05D004361 1.8e-06 59.3 308 24.7
ATR0561G103 Amborella trichopoda HOM05D003782 ORTHO05D004361 2.4e-06 58.9 109 38.5
MBI19_g13594_MAGBIO Magnolia biondii HOM05D003782 ORTHO05D004361 3.1e-06 58.5 48 52.1


User provided reference genes

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