Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G0952 Fragaria x ananassa HOM05D007274 ORTHO05D009194 1.2e-49 199.5 101 100.0
FAN16G2799 Fragaria x ananassa HOM05D007274 ORTHO05D009194 6.9e-37 157.1 184 53.3
FvH4_3g30550 Fragaria vesca HOM05D007274 ORTHO05D009194 1.3e-32 142.9 72 98.6
FAN11G1565 Fragaria x ananassa HOM05D007274 ORTHO05D009194 3.0e-32 141.7 75 93.3
RcHm_v2.0_Chr5g0056551 Rosa chinensis HOM05D007274 ORTHO05D009194 8.7e-32 140.2 70 98.6
Aa31LG1G12850 Aethionema arabicum HOM05D007274 ORTHO05D009194 3.7e-30 134.8 101 69.3
BcaB08g36400 Brassica carinata HOM05D007274 ORTHO05D009194 8.2e-30 133.7 78 84.6
THA.LOC109116051 Tarenaya hassleriana HOM05D007274 ORTHO05D009194 9.0e-29 130.2 70 91.4
BcaB05g22677 Brassica carinata HOM05D007274 ORTHO05D009194 1.2e-28 129.8 70 91.4
BcaC04g19606 Brassica carinata HOM05D007274 ORTHO05D009194 1.2e-28 129.8 70 91.4
C09p53770 Brassica napus HOM05D007274 ORTHO05D009194 1.2e-28 129.8 70 91.4
BolC9t58252H Brassica oleracea HOM05D007274 ORTHO05D009194 1.2e-28 129.8 70 91.4
CARHR190660 Cardamine hirsuta HOM05D007274 ORTHO05D009194 1.2e-28 129.8 70 91.4
Thhalv10015213m.g Eutrema salsugineum HOM05D007274 ORTHO05D009194 1.2e-28 129.8 70 91.4
Sp6g22530 Schrenkiella parvula HOM05D007274 ORTHO05D009194 1.2e-28 129.8 70 91.4
AT5G22875 Arabidopsis thaliana HOM05D007274 ORTHO05D009194 3.4e-28 128.3 70 90.0
AL6G34010 Arabidopsis lyrata HOM05D007274 ORTHO05D009194 4.5e-28 127.9 70 90.0
MD03G1128500 Malus domestica HOM05D007274 ORTHO05D009194 4.5e-28 127.9 70 88.6
A10p18160 Brassica napus HOM05D007274 ORTHO05D009194 7.7e-28 127.1 70 90.0
BraA10t43891Z Brassica rapa HOM05D007274 ORTHO05D009194 7.7e-28 127.1 70 90.0
CANSAT64G0704 Cannabis sativa HOM05D007274 ORTHO05D009194 1.0e-27 126.7 69 88.4
Carub.0006s2065 Capsella rubella HOM05D007274 ORTHO05D009194 1.0e-27 126.7 70 90.0
Haze_23527 Corylus avellana HOM05D007274 ORTHO05D009194 3.8e-27 124.8 70 85.7
Prupe.6G113700 Prunus persica HOM05D007274 ORTHO05D009194 3.8e-27 124.8 70 87.1
Cfa010139 Carpinus fangiana HOM05D007274 ORTHO05D009194 8.5e-27 123.6 70 85.7
Psat7g223680 Pisum sativum HOM05D007274 ORTHO05D009194 8.5e-27 123.6 70 85.7
Lalb_Chr19g0136881 Lupinus albus HOM05D007274 ORTHO05D009194 1.9e-26 122.5 70 82.9
TPR.G36741 Trifolium pratense HOM05D007274 ORTHO05D009194 1.9e-26 122.5 70 84.3
Ciclev10029644m.g Citrus clementina HOM05D007274 ORTHO05D009194 4.2e-26 121.3 71 85.9
Sed0003405 Sechium edule HOM05D007274 ORTHO05D009194 4.2e-26 121.3 71 83.1
Ca_10763_v3 Cicer arietinum L. HOM05D007274 ORTHO05D009194 9.4e-26 120.2 70 82.9
Medtr4g057190 Medicago truncatula HOM05D007274 ORTHO05D009194 1.2e-25 119.8 69 81.2
QL01p014890 Quercus lobata HOM05D007274 ORTHO05D009194 1.2e-25 119.8 68 82.4
Lj3g0015703 Lotus japonicus HOM05D007274 ORTHO05D009194 1.6e-25 119.4 70 82.9
ClCG02G021670 Citrullus lanatus HOM05D007274 ORTHO05D009194 2.1e-25 119.0 70 82.9
Thecc.09G297800 Theobroma cacao HOM05D007274 ORTHO05D009194 2.1e-25 119.0 70 80.0
Cpa.g.sc47.5 Carica papaya HOM05D007274 ORTHO05D009194 3.6e-25 118.2 70 82.9
CiPaw.14G106900 Carya illinoinensis HOM05D007274 ORTHO05D009194 6.1e-25 117.5 70 80.0
Oeu007727.1 Olea europaea HOM05D007274 ORTHO05D009194 1.0e-24 116.7 72 81.9
AUR62024013 Chenopodium quinoa HOM05D007274 ORTHO05D009194 1.4e-24 116.3 73 80.8
vmacro03251 Vaccinium macrocarpon HOM05D007274 ORTHO05D009194 2.3e-24 115.5 73 79.5
Solyc11g066450.2 Solanum lycopersicum HOM05D007274 ORTHO05D009194 3.0e-24 115.2 73 78.1
Sopen11g026200 Solanum pennellii HOM05D007274 ORTHO05D009194 3.0e-24 115.2 73 78.1
PGSC0003DMG401000458 Solanum tuberosum HOM05D007274 ORTHO05D009194 3.0e-24 115.2 73 78.1
arahy.Tifrunner.gnm1.ann1.BZT54Z Arachis hypogaea HOM05D007274 ORTHO05D009194 3.9e-24 114.8 70 81.4
arahy.Tifrunner.gnm1.ann1.F7FWRZ Arachis hypogaea HOM05D007274 ORTHO05D009194 3.9e-24 114.8 70 81.4
Rhsim13G0101500 Rhododendron simsii HOM05D007274 ORTHO05D009194 3.9e-24 114.8 73 79.5
Hund00829 Selenicereus undatus HOM05D007274 ORTHO05D009194 3.9e-24 114.8 81 72.8
Lsat_1_v5_gn_1_64881 Lactuca sativa HOM05D007274 ORTHO05D009194 8.8e-24 113.6 75 77.3
AUR62041328 Chenopodium quinoa HOM05D007274 ORTHO05D009194 1.5e-23 112.8 72 79.2
Peaxi162Scf00983g00003 Petunia axillaris HOM05D007274 ORTHO05D009194 1.5e-23 112.8 72 75.0
Sc06g0006140 Simmondsia chinensis HOM05D007274 ORTHO05D009194 1.5e-23 112.8 72 76.4
Manes.04G012400 Manihot esculenta HOM05D007274 ORTHO05D009194 2.0e-23 112.5 71 78.9
Rhsim13G0101200 Rhododendron simsii HOM05D007274 ORTHO05D009194 2.0e-23 112.5 73 78.1
Actinidia07190 Actinidia chinensis HOM05D007274 ORTHO05D009194 2.5e-23 112.1 73 76.7
Ah.01g004810 Amaranthus hybridus HOM05D007274 ORTHO05D009194 3.3e-23 111.7 72 79.2
CSS0018211 Camellia sinensis var. sinensis HOM05D007274 ORTHO05D009194 3.3e-23 111.7 71 78.9
Haze_23532 Corylus avellana HOM05D007274 ORTHO05D009194 3.3e-23 111.7 70 77.1
Atru.chr3.3502 Acer truncatum HOM05D007274 ORTHO05D009194 4.3e-23 111.3 65 86.2
ECA248G0925 Erigeron canadensis HOM05D007274 ORTHO05D009194 4.3e-23 111.3 72 77.8
PGR102G1958 Punica granatum HOM05D007274 ORTHO05D009194 5.7e-23 110.9 71 74.6
DCAR_022681 Daucus carota HOM05D007274 ORTHO05D009194 7.4e-23 110.5 72 77.8
Duzib150G1296 Durio zibethinus HOM05D007274 ORTHO05D009194 7.4e-23 110.5 70 77.1
Duzib150G1526 Durio zibethinus HOM05D007274 ORTHO05D009194 7.4e-23 110.5 70 77.1
Nitab4.5_0009628g0020 Nicotiana tabacum HOM05D007274 ORTHO05D009194 7.4e-23 110.5 73 75.3
Glyma.12G082200 Glycine max HOM05D007274 ORTHO05D009194 9.7e-23 110.2 62 85.5
PSO384G1249 Papaver somniferum HOM05D007274 ORTHO05D009194 9.7e-23 110.2 105 56.2
Sabra04G0148000 Salix brachista HOM05D007274 ORTHO05D009194 9.7e-23 110.2 71 77.5
SGA_v2.0_scaffold277G46704 Striga asiatica HOM05D007274 ORTHO05D009194 9.7e-23 110.2 74 73.0
Cc01_g10210 Coffea canephora HOM05D007274 ORTHO05D009194 1.3e-22 109.8 73 74.0
CAN.G546.54 Capsicum annuum HOM05D007274 ORTHO05D009194 1.7e-22 109.4 73 75.3
Gohir.A09G064000 Gossypium hirsutum HOM05D007274 ORTHO05D009194 1.7e-22 109.4 70 77.1
Gohir.D09G062900 Gossypium hirsutum HOM05D007274 ORTHO05D009194 1.7e-22 109.4 70 77.1
Gorai.006G077700 Gossypium raimondii HOM05D007274 ORTHO05D009194 1.7e-22 109.4 70 77.1
Nitab4.5_0000173g0170 Nicotiana tabacum HOM05D007274 ORTHO05D009194 1.7e-22 109.4 73 74.0
SalBow6G3121 Salvia bowleyana HOM05D007274 ORTHO05D009194 1.7e-22 109.4 72 77.8
Potri.004G217300 Populus trichocarpa HOM05D007274 ORTHO05D009194 2.2e-22 109.0 71 76.1
COL.COLO4_19207 Corchorus olitorius HOM05D007274 ORTHO05D009194 2.8e-22 108.6 70 75.7
Migut.D02299 Erythranthe guttata HOM05D007274 ORTHO05D009194 2.8e-22 108.6 72 76.4
Haze_08394 Corylus avellana HOM05D007274 ORTHO05D009194 3.7e-22 108.2 81 66.7
Phvul.005G069100 Phaseolus vulgaris HOM05D007274 ORTHO05D009194 3.7e-22 108.2 62 83.9
Phvul.011G086800 Phaseolus vulgaris HOM05D007274 ORTHO05D009194 3.7e-22 108.2 62 83.9
EL10Ac9g21016 Beta vulgaris HOM05D007274 ORTHO05D009194 4.8e-22 107.8 70 75.7
HanXRQChr11g0346021 Helianthus annuus HOM05D007274 ORTHO05D009194 4.8e-22 107.8 72 75.0
CSS0039770 Camellia sinensis var. sinensis HOM05D007274 ORTHO05D009194 6.3e-22 107.5 73 74.0
C02p11370 Brassica napus HOM05D007274 ORTHO05D009194 1.4e-21 106.3 64 85.9
MBI04_g08417_MAGBIO Magnolia biondii HOM05D007274 ORTHO05D009194 2.4e-21 105.5 69 72.5
BNapus_Darmor_BZH_scaffold_38p00270 Brassica napus HOM05D007274 ORTHO05D009194 4.1e-21 104.8 64 84.4
Os04g0165500 Oryza sativa ssp. japonica HOM05D007274 ORTHO05D009194 5.3e-21 104.4 71 70.4
BraA02t05697Z Brassica rapa HOM05D007274 ORTHO05D009194 1.2e-20 103.2 64 84.4
CSS0045495 Camellia sinensis var. sinensis HOM05D007274 ORTHO05D009194 1.5e-20 102.8 73 71.2
Nn2g13873 Nelumbo nucifera HOM05D007274 ORTHO05D009194 1.5e-20 102.8 65 73.8
CSS0014818 Camellia sinensis var. sinensis HOM05D007274 ORTHO05D009194 2.0e-20 102.4 73 71.2
unitig_899.g15364 Utricularia gibba HOM05D000376 ORTHO05D000237 3.4e-20 101.7 69 73.9
HPP92_002407 Vanilla planifolia HOM05D007274 ORTHO05D009194 3.4e-20 101.7 71 69.0
Glyma.11G192200 Glycine max HOM05D007274 ORTHO05D009194 7.7e-20 100.5 61 78.7
Aqoxy1G01060 Aquilegia oxysepala HOM05D007274 ORTHO05D009194 5.0e-19 97.8 65 70.8
Nn5g27554 Nelumbo nucifera HOM05D007274 ORTHO05D009194 3.2e-18 95.1 64 70.3
GSVIVG01031456001 Vitis vinifera HOM05D007274 ORTHO05D009194 7.2e-18 94.0 68 64.7
ATR0043G009 Amborella trichopoda HOM05D007274 ORTHO05D009194 6.1e-17 90.9 63 66.7
CDE04G2982 Ceratophyllum demersum HOM05D007274 ORTHO05D009194 3.0e-16 88.6 64 65.6
MD11G1149300 Malus domestica HOM05D007274 ORTHO05D009194 2.0e-15 85.9 50 86.0
Mapoly0009s0144 Marchantia polymorpha HOM05D007274 ORTHO05D009194 5.7e-15 84.3 60 61.7
SEGI_23633 Sequoiadendron giganteum HOM05D007274 ORTHO05D009194 7.4e-15 84.0 64 68.8
Pp3c6_6370 Physcomitrium patens HOM05D007274 ORTHO05D009194 7.0e-13 77.4 59 64.4
Lsat_1_v5_gn_1_64921 Lactuca sativa HOM05D007274 ORTHO05D009194 2.0e-12 75.9 65 64.6
SHI06197 Sapria himalayana HOM05D005377 ORTHO05D003034 2.1e-09 65.9 59 61.0
TAR369G0919 Trochodendron aralioides HOM05D007274 ORTHO05D009194 1.4e-08 63.2 42 71.4
BolC2t07210H Brassica oleracea HOM05D007274 ORTHO05D009194 8.2e-06 53.9 31 90.3


User provided reference genes

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