Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G0933 Fragaria x ananassa HOM05D001447 ORTHO05D005923 4.1e-176 621.3 319 100.0
FAN16G0976 Fragaria x ananassa HOM05D001447 ORTHO05D005923 2.5e-165 585.5 316 96.2
FvH4_3g28310 Fragaria vesca HOM05D001447 ORTHO05D005923 1.7e-161 572.8 316 94.6
FAN11G3154 Fragaria x ananassa HOM05D001447 ORTHO05D005923 1.7e-161 572.8 316 94.6
FAN25G1867 Fragaria x ananassa HOM05D001447 ORTHO05D005923 2.9e-158 562.0 316 93.0
RcHm_v2.0_Chr5g0051191 Rosa chinensis HOM05D001447 ORTHO05D005923 8.3e-129 464.2 317 77.6
Prupe.4G257000 Prunus persica HOM05D001447 ORTHO05D005923 1.9e-80 303.5 319 55.2
Cfa009826 Carpinus fangiana HOM05D001447 ORTHO05D008204 1.1e-69 267.7 320 48.4
CANSAT54G2333 Cannabis sativa HOM05D001447 ORTHO05D005923 2.9e-65 253.1 325 48.9
TWI23G0345 Tripterygium wilfordii HOM05D001447 ORTHO05D005923 5.0e-65 252.3 336 47.6
MD03G1170100 Malus domestica HOM05D001447 ORTHO05D005923 6.5e-65 251.9 317 47.6
MD11G1187600 Malus domestica HOM05D001447 ORTHO05D005923 1.1e-64 251.1 317 46.7
Dinv36208 Davidia involucrata HOM05D001447 ORTHO05D005923 1.5e-64 250.8 318 46.2
CiPaw.13G153600 Carya illinoinensis HOM05D001447 ORTHO05D005923 2.1e-63 246.9 320 46.6
TWI14G1124 Tripterygium wilfordii HOM05D001447 ORTHO05D005923 1.1e-61 241.1 341 45.5
GSVIVG01031554001 Vitis vinifera HOM05D001447 ORTHO05D005923 4.1e-59 232.6 323 44.6
Haze_23187 Corylus avellana HOM05D001447 ORTHO05D005923 1.3e-57 227.6 320 44.4
Gohir.A09G111500 Gossypium hirsutum HOM05D001447 ORTHO05D005923 1.1e-56 224.6 320 43.4
CSS0020855 Camellia sinensis var. sinensis HOM05D001447 ORTHO05D005923 7.2e-56 221.9 325 43.1
Thecc.09G241000 Theobroma cacao HOM05D001447 ORTHO05D005923 9.4e-56 221.5 319 42.6
Manes.09G003800 Manihot esculenta HOM05D001447 ORTHO05D005923 1.2e-55 221.1 321 43.9
Duzib168G0657 Durio zibethinus HOM05D001447 ORTHO05D005923 3.6e-55 219.5 290 46.9
Gohir.D09G108100 Gossypium hirsutum HOM05D001447 ORTHO05D005923 4.7e-55 219.2 320 42.8
Gorai.006G125800 Gossypium raimondii HOM05D001447 ORTHO05D005923 4.7e-55 219.2 320 42.8
TAR369G0010 Trochodendron aralioides HOM05D001447 ORTHO05D005923 1.8e-54 217.2 324 42.0
Cpa.g.sc84.6 Carica papaya HOM05D001447 ORTHO05D005923 3.0e-54 216.5 320 44.7
Manes.06G161200 Manihot esculenta HOM05D001447 ORTHO05D005923 6.8e-54 215.3 321 43.3
Nn2g15058 Nelumbo nucifera HOM05D001447 ORTHO05D005923 6.8e-54 215.3 322 41.6
ClCG02G023020 Citrullus lanatus HOM05D001447 ORTHO05D008204 2.6e-53 213.4 321 41.4
Oeu038401.1 Olea europaea HOM05D001447 ORTHO05D005923 4.4e-53 212.6 317 42.9
TAR623G1061 Trochodendron aralioides HOM05D001447 ORTHO05D005923 5.7e-53 212.2 325 43.4
Actinidia06934 Actinidia chinensis HOM05D001447 ORTHO05D008204 3.7e-52 209.5 323 42.1
MELO3C014572.2 Cucumis melo HOM05D001447 ORTHO05D005923 8.3e-52 208.4 323 41.5
LjContig00136g0008106 Lotus japonicus HOM05D001447 ORTHO05D005923 1.8e-51 207.2 321 40.8
CsaV3_6G039120 Cucumis sativus L. HOM05D001447 ORTHO05D008204 3.1e-51 206.5 322 41.6
Gorai.009G074300 Gossypium raimondii HOM05D001447 ORTHO05D005923 9.1e-51 204.9 324 40.4
Potri.009G049500 Populus trichocarpa HOM05D001447 ORTHO05D005923 2.7e-50 203.4 320 43.8
Cc01_g06480 Coffea canephora HOM05D001447 ORTHO05D005923 3.5e-50 203.0 318 41.2
Lalb_Chr17g0336631 Lupinus albus HOM05D001447 ORTHO05D005923 1.0e-49 201.4 351 38.7
VMungo1383G2912 Vigna mungo HOM05D001447 ORTHO05D005923 1.0e-49 201.4 319 41.4
Glyma.18G222500 Glycine max HOM05D001447 ORTHO05D005923 1.3e-49 201.1 321 40.5
COL.COLO4_36479 Corchorus olitorius HOM05D001447 ORTHO05D005923 1.7e-49 200.7 288 43.1
AUR62000166 Chenopodium quinoa HOM05D001447 ORTHO05D005923 5.5e-48 195.7 319 39.8
Eucgr.J00732 Eucalyptus grandis HOM05D001447 ORTHO05D005923 7.2e-48 195.3 323 39.0
CARHR095600 Cardamine hirsuta HOM05D001447 ORTHO05D005923 2.7e-47 193.4 317 41.3
Sopen02g030930 Solanum pennellii HOM05D001447 ORTHO05D005923 3.6e-47 193.0 320 39.7
CAN.G625.44 Capsicum annuum HOM05D001447 ORTHO05D005923 4.7e-47 192.6 319 38.2
Glyma.13G152406 Glycine max HOM05D001447 ORTHO05D005923 8.0e-47 191.8 317 40.4
Lsat_1_v5_gn_2_28360 Lactuca sativa HOM05D001447 ORTHO05D005923 1.0e-46 191.4 319 40.4
arahy.Tifrunner.gnm1.ann1.Q3UL2U Arachis hypogaea HOM05D001447 ORTHO05D005923 1.4e-46 191.0 321 40.2
Gohir.D05G073400 Gossypium hirsutum HOM05D001447 ORTHO05D005923 1.4e-46 191.0 318 39.0
Glyma.10G069400 Glycine max HOM05D001447 ORTHO05D005923 1.8e-46 190.7 317 42.3
MSTRG.11555 Avicennia marina HOM05D001447 ORTHO05D005923 3.0e-46 189.9 323 41.8
Atru.chr3.2630 Acer truncatum HOM05D001447 ORTHO05D005923 4.0e-46 189.5 354 36.7
arahy.Tifrunner.gnm1.ann1.QJKL08 Arachis hypogaea HOM05D001447 ORTHO05D005923 4.0e-46 189.5 324 40.7
Sp3g18100 Schrenkiella parvula HOM05D001447 ORTHO05D005923 4.0e-46 189.5 317 42.0
Phvul.008G074800 Phaseolus vulgaris HOM05D001447 ORTHO05D005923 5.2e-46 189.1 319 39.2
Hma1.2p1_1503F.1_g287490 Hydrangea macrophylla HOM05D001447 ORTHO05D005923 6.8e-46 188.7 322 41.0
Solyc02g086250.4 Solanum lycopersicum HOM05D001447 ORTHO05D005923 6.8e-46 188.7 321 39.9
Peaxi162Scf00394g00910 Petunia axillaris HOM05D001447 ORTHO05D005923 4.4e-45 186.0 287 38.3
vmacro10456 Vaccinium macrocarpon HOM05D001447 ORTHO05D005923 7.5e-45 185.3 343 38.2
PGR119G0225 Punica granatum HOM05D001447 ORTHO05D005923 9.8e-45 184.9 322 38.2
Aa31LG8G6860 Aethionema arabicum HOM05D001447 ORTHO05D005923 1.7e-44 184.1 319 40.4
AUR62039845 Chenopodium quinoa HOM05D001447 ORTHO05D005923 1.7e-44 184.1 334 38.9
THA.LOC104809267 Tarenaya hassleriana HOM05D001447 ORTHO05D005923 1.7e-44 184.1 318 41.2
PSO170G2976 Papaver somniferum HOM05D001447 ORTHO05D005923 4.9e-44 182.6 321 37.7
Migut.O00259 Erythranthe guttata HOM05D001447 ORTHO05D005923 6.3e-44 182.2 321 39.9
THA.LOC104811411 Tarenaya hassleriana HOM05D001447 ORTHO05D005923 8.3e-44 181.8 320 41.2
Lalb_Chr20g0108071 Lupinus albus HOM05D001447 ORTHO05D005923 1.1e-43 181.4 355 36.1
TPR.G26927 Trifolium pratense HOM05D001447 ORTHO05D005923 1.4e-43 181.0 320 39.4
AL3G33750 Arabidopsis lyrata HOM05D001447 ORTHO05D005923 1.8e-43 180.6 324 38.0
Glyma.09G267400 Glycine max HOM05D001447 ORTHO05D005923 1.8e-43 180.6 323 37.8
ECA233G1682 Erigeron canadensis HOM05D001447 ORTHO05D005923 7.0e-43 178.7 326 35.9
Medtr7g075050 Medicago truncatula HOM05D001447 ORTHO05D005923 2.0e-42 177.2 325 38.5
PSO384G1304 Papaver somniferum HOM05D001447 ORTHO05D005923 2.7e-42 176.8 321 37.4
Hma1.2p1_1116F.1_g258880 Hydrangea macrophylla HOM05D001447 ORTHO05D005923 4.5e-42 176.0 298 40.3
Rhsim13G0217200 Rhododendron simsii HOM05D001447 ORTHO05D005923 1.0e-41 174.9 344 36.9
Medtr8g059560 Medicago truncatula HOM05D001447 ORTHO05D005923 1.3e-41 174.5 325 37.8
Actinidia16355 Actinidia chinensis HOM05D001447 ORTHO05D005923 2.9e-41 173.3 377 33.7
MBI13_g04766_MAGBIO Magnolia biondii HOM05D001447 ORTHO05D005923 6.6e-41 172.2 320 37.2
Nitab4.5_0003652g0030 Nicotiana tabacum HOM05D001447 ORTHO05D005923 6.6e-41 172.2 326 37.4
vmacro04118 Vaccinium macrocarpon HOM05D001447 ORTHO05D005923 1.1e-40 171.4 409 33.0
PSO339G5991 Papaver somniferum HOM05D001447 ORTHO05D005923 1.5e-40 171.0 327 36.4
ECA234G3051 Erigeron canadensis HOM05D001447 ORTHO05D005923 1.9e-40 170.6 317 37.5
Gohir.A05G070400 Gossypium hirsutum HOM05D001447 ORTHO05D005923 1.9e-40 170.6 325 36.6
Carub.0003s1999 Capsella rubella HOM05D001447 ORTHO05D005923 2.5e-40 170.2 317 36.9
HanXRQChr14g0441711 Helianthus annuus HOM05D001447 ORTHO05D005923 2.5e-40 170.2 320 37.8
Hund21995 Selenicereus undatus HOM05D001447 ORTHO05D005923 5.6e-40 169.1 338 38.2
Thhalv10021184m.g Eutrema salsugineum HOM05D001447 ORTHO05D005923 9.5e-40 168.3 345 36.8
Ah.06g193790 Amaranthus hybridus HOM05D001447 ORTHO05D005923 3.6e-39 166.4 330 35.8
VMungo0540G1247 Vigna mungo HOM05D001447 ORTHO05D003921 1.4e-38 164.5 321 36.8
BcaB06g26078 Brassica carinata HOM05D001447 ORTHO05D005923 4.0e-38 162.9 320 35.3
C05p44410 Brassica napus HOM05D001447 ORTHO05D005923 1.2e-37 161.4 317 36.9
BolC5t33164H Brassica oleracea HOM05D001447 ORTHO05D005923 1.2e-37 161.4 317 36.9
BcaC05g28363 Brassica carinata HOM05D001447 ORTHO05D005923 9.8e-37 158.3 317 36.6
A05p29010 Brassica napus HOM05D001447 ORTHO05D005923 2.2e-36 157.1 336 35.1
EL10Ac4g10184 Beta vulgaris HOM05D001447 ORTHO05D005923 3.7e-36 156.4 295 34.9
PGSC0003DMG400026385 Solanum tuberosum HOM05D001447 ORTHO05D005923 1.4e-35 154.5 329 33.1
SalBow4G0828 Salvia bowleyana HOM05D001447 ORTHO05D005923 4.1e-35 152.9 383 33.4
BraA05t21783Z Brassica rapa HOM05D001447 ORTHO05D005923 7.0e-35 152.1 320 35.3
Sed0027916 Sechium edule HOM05D001447 ORTHO05D005923 4.6e-34 149.4 317 34.1
Psat3g114240 Pisum sativum HOM05D001447 ORTHO05D005923 3.9e-33 146.4 321 34.6
Aqoxy2G00276 Aquilegia oxysepala HOM05D001447 ORTHO05D005923 6.6e-33 145.6 337 32.6
AT3G20070 Arabidopsis thaliana HOM05D001447 ORTHO05D005923 1.1e-32 144.8 317 34.7
Nitab4.5_0000753g0110 Nicotiana tabacum HOM05D001447 ORTHO05D005923 1.1e-32 144.8 323 33.7
TAR623G1057 Trochodendron aralioides HOM05D001447 ORTHO05D005923 1.1e-32 144.8 233 42.9
Sc09g0000900 Simmondsia chinensis HOM05D001447 ORTHO05D005923 1.6e-31 141.0 318 33.6
DCAR_002089 Daucus carota HOM05D001447 ORTHO05D005923 1.5e-29 134.4 223 38.1
Ciclev10006845m.g Citrus clementina HOM05D001447 ORTHO05D005923 2.6e-29 133.7 318 33.3
TAR623G0977 Trochodendron aralioides HOM05D001447 ORTHO05D005923 1.3e-28 131.3 227 40.5
PSO210G7517 Papaver somniferum HOM05D001447 ORTHO05D005923 2.2e-28 130.6 321 33.3
ATR0681G241 Amborella trichopoda HOM05D001447 ORTHO05D005923 3.7e-28 129.8 339 31.6
Lj2A623T26 Lonicera japonica HOM05D001447 ORTHO05D005923 4.1e-27 126.3 230 37.4
QL01p018064 Quercus lobata HOM05D001447 ORTHO05D005923 7.8e-26 122.1 223 39.9
Lj5A793G14 Lonicera japonica HOM05D001447 ORTHO05D005923 3.0e-25 120.2 233 36.1
Ca_07826_v3 Cicer arietinum L. HOM05D001447 ORTHO05D005923 3.3e-24 116.7 238 37.0
HPP92_015725 Vanilla planifolia HOM05D001447 ORTHO05D005923 4.7e-23 112.8 319 29.2
HanXRQChr04g0117031 Helianthus annuus HOM05D001447 ORTHO05D005923 1.1e-22 111.7 259 32.8
unitig_8.g3773 Utricularia gibba HOM05D001447 ORTHO05D005923 1.5e-21 107.8 104 50.0
Os06g0245600 Oryza sativa ssp. japonica HOM05D001447 ORTHO05D005923 4.1e-19 99.8 275 27.6
Aqoxy2G00275 Aquilegia oxysepala HOM05D001447 ORTHO05D005923 5.4e-19 99.4 328 28.0
CDE02G0596 Ceratophyllum demersum HOM05D001447 ORTHO05D005923 2.7e-18 97.1 152 36.8
SHI27451 Sapria himalayana HOM05D001447 ORTHO05D000654 3.5e-18 96.7 148 38.5
SGA_v2.0_scaffold25G10748 Striga asiatica HOM05D001447 ORTHO05D005923 6.0e-18 95.9 93 47.3
BolC4t26880H Brassica oleracea HOM05D001447 ORTHO05D005923 7.3e-16 89.0 244 35.7
BcaB01g01441 Brassica carinata HOM05D001447 ORTHO05D005923 8.9e-14 82.0 231 32.9
TAR622G0649 Trochodendron aralioides HOM05D000050 ORTHO05D000654 8.9e-14 82.0 315 24.1
TAR623G1702 Trochodendron aralioides HOM05D001447 ORTHO05D005923 8.9e-14 82.0 236 34.3
BcaB02g07197 Brassica carinata HOM05D001447 ORTHO05D005923 9.9e-13 78.6 121 39.7
SEGI_06958 Sequoiadendron giganteum HOM05D001447 ORTHO05D005923 8.4e-12 75.5 350 24.3
TAR623G0653 Trochodendron aralioides HOM05D001447 ORTHO05D005923 2.4e-11 73.9 55 60.0
Zm00001eb128570 Zea mays HOM05D001447 ORTHO05D005923 7.1e-11 72.4 86 38.4
SEGI_16617 Sequoiadendron giganteum HOM05D001447 ORTHO05D005923 3.5e-10 70.1 357 22.7
TAR623G0319 Trochodendron aralioides HOM05D001447 ORTHO05D005923 1.0e-09 68.6 210 30.5
VMungo1383G3216 Vigna mungo HOM05D001447 ORTHO05D010195 6.6e-09 65.9 113 38.1
QL01p018054 Quercus lobata HOM05D001447 ORTHO05D005923 2.5e-08 63.9 77 42.9
VMungo1383G1695 Vigna mungo HOM05D001447 ORTHO05D005923 1.2e-07 61.6 108 37.0
Aa31LG7G13510 Aethionema arabicum HOM05D001447 ORTHO05D005923 1.6e-07 61.2 137 33.6
BcaB06g26464 Brassica carinata HOM05D001447 ORTHO05D005923 2.1e-07 60.8 131 35.9
BcaC01g05497 Brassica carinata HOM05D001447 ORTHO05D005923 6.2e-07 59.3 69 43.5
BcaC02g08532 Brassica carinata HOM05D001447 ORTHO05D005923 1.4e-06 58.2 63 47.6
Thhalv10023995m.g Eutrema salsugineum HOM05D001447 ORTHO05D005923 5.2e-06 56.2 40 55.0
FvH4_7g24870 Fragaria vesca HOM05D021264 ORTHO05D022594 5.2e-06 56.2 200 30.0
SMO200G0114 Selaginella moellendorffii HOM05D004617 ORTHO05D005531 8.9e-06 55.5 93 30.1


User provided reference genes

Program Settings