Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G0929 Fragaria x ananassa HOM05D000007 ORTHO05D025461 3.6e-171 604.7 287 100.0
FvH4_3g41860 Fragaria vesca HOM05D000007 ORTHO05D025461 8.6e-133 477.2 459 58.6
FAN11G3926 Fragaria x ananassa HOM05D000007 ORTHO05D025461 3.1e-98 362.5 424 53.3
FAN16G0648 Fragaria x ananassa HOM05D000308 ORTHO05D000194 1.7e-80 303.5 348 50.6
FAN25G0715 Fragaria x ananassa HOM05D000007 ORTHO05D025461 7.9e-78 294.7 367 51.0
RcHm_v2.0_Chr5g0075701 Rosa chinensis HOM05D000007 ORTHO05D025461 3.6e-46 189.5 140 66.4
RcHm_v2.0_Chr5g0076131 Rosa chinensis HOM05D000007 ORTHO05D000017 8.5e-32 141.7 421 29.0
RcHm_v2.0_Chr5g0076141 Rosa chinensis HOM05D000007 ORTHO05D000017 5.5e-31 139.0 419 29.8
FvH4_1g08100 Fragaria vesca HOM05D000007 ORTHO05D000017 3.4e-28 129.8 405 27.9
FvH4_3g42360 Fragaria vesca HOM05D000007 ORTHO05D000017 3.4e-28 129.8 420 29.3
FAN11G0597 Fragaria x ananassa HOM05D000007 ORTHO05D000017 4.4e-28 129.4 420 29.3
FAN28G1795 Fragaria x ananassa HOM05D000007 ORTHO05D000017 4.4e-28 129.4 420 29.3
FvH4_3g41771 Fragaria vesca HOM05D000007 ORTHO05D000017 9.8e-28 128.3 302 31.1
RcHm_v2.0_Chr5g0076061 Rosa chinensis HOM05D000007 ORTHO05D000017 2.2e-27 127.1 424 28.8
RcHm_v2.0_Chr5g0076031 Rosa chinensis HOM05D000007 ORTHO05D000017 1.8e-26 124.0 410 28.8
FAN11G1339 Fragaria x ananassa HOM05D000007 ORTHO05D000017 2.4e-26 123.6 361 28.8
FAN11G1511 Fragaria x ananassa HOM05D000007 ORTHO05D000017 7.0e-26 122.1 361 28.5
FAN16G3706 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.6e-25 120.9 361 28.5
RcHm_v2.0_Chr5g0076151 Rosa chinensis HOM05D000007 ORTHO05D000017 1.6e-25 120.9 434 28.8
RcHm_v2.0_Chr5g0076101 Rosa chinensis HOM05D000007 ORTHO05D000017 2.7e-25 120.2 438 27.2
RcHm_v2.0_Chr1g0361131 Rosa chinensis HOM05D000007 ORTHO05D000017 3.5e-25 119.8 428 26.9
RcHm_v2.0_Chr5g0076091 Rosa chinensis HOM05D000007 ORTHO05D000017 1.7e-24 117.5 417 27.8
FvH4_3g42304 Fragaria vesca HOM05D000007 ORTHO05D000017 1.2e-22 111.3 431 27.4
FvH4_3g42450 Fragaria vesca HOM05D000007 ORTHO05D000017 1.2e-22 111.3 430 26.5
FAN11G3870 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.2e-22 111.3 431 27.4
RcHm_v2.0_Chr5g0075691 Rosa chinensis HOM05D000007 ORTHO05D000017 1.2e-22 111.3 386 30.1
FAN16G0625 Fragaria x ananassa HOM05D000007 ORTHO05D045626 1.6e-22 110.9 297 32.0
RcHm_v2.0_Chr7g0226441 Rosa chinensis HOM05D000007 ORTHO05D000017 2.8e-22 110.2 418 25.4
FAN28G0209 Fragaria x ananassa HOM05D000007 ORTHO05D000017 6.1e-22 109.0 423 27.4
RcHm_v2.0_Chr1g0380601 Rosa chinensis HOM05D000007 ORTHO05D000017 3.0e-21 106.7 432 26.4
RcHm_v2.0_Chr7g0226431 Rosa chinensis HOM05D000007 ORTHO05D000017 4.0e-21 106.3 422 25.1
RcHm_v2.0_Chr5g0075931 Rosa chinensis HOM05D000007 ORTHO05D000017 5.2e-21 105.9 418 26.8
Prupe.2G278600 Prunus persica HOM05D000007 ORTHO05D000017 1.2e-20 104.8 403 27.0
RcHm_v2.0_Chr5g0075941 Rosa chinensis HOM05D000007 ORTHO05D000017 3.4e-20 103.2 275 28.7
FAN21G1277 Fragaria x ananassa HOM05D000007 ORTHO05D000017 7.5e-20 102.1 311 29.6
FvH4_3g42460 Fragaria vesca HOM05D000007 ORTHO05D000017 2.8e-19 100.1 409 26.9
FAN18G1100 Fragaria x ananassa HOM05D000007 ORTHO05D000017 2.4e-18 97.1 440 24.1
FvH4_3g42321 Fragaria vesca HOM05D000007 ORTHO05D000017 7.0e-18 95.5 427 26.0
FvH4_3g42301 Fragaria vesca HOM05D000007 ORTHO05D000017 9.2e-18 95.1 302 30.1
FAN11G0172 Fragaria x ananassa HOM05D000007 ORTHO05D000017 9.2e-18 95.1 427 26.0
RcHm_v2.0_Chr2g0107811 Rosa chinensis HOM05D000007 ORTHO05D000017 9.2e-18 95.1 350 29.1
FvH4_1g18430 Fragaria vesca HOM05D000007 ORTHO05D000017 1.2e-17 94.7 183 34.4
FvH4_1g18391 Fragaria vesca HOM05D000007 ORTHO05D000017 3.5e-17 93.2 218 32.1
RcHm_v2.0_Chr2g0107851 Rosa chinensis HOM05D000007 ORTHO05D000017 3.5e-17 93.2 356 28.1
FAN19G2806 Fragaria x ananassa HOM05D000007 ORTHO05D000017 4.5e-17 92.8 189 33.9
Prupe.6G214700 Prunus persica HOM05D000007 ORTHO05D000017 5.9e-17 92.4 349 26.6
FvH4_3g14952 Fragaria vesca HOM05D000007 ORTHO05D000017 7.8e-17 92.0 345 25.8
RcHm_v2.0_Chr7g0226091 Rosa chinensis HOM05D000007 ORTHO05D000017 1.0e-16 91.7 411 23.8
FAN16G0234 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.7e-16 90.9 358 27.7
RcHm_v2.0_Chr2g0107891 Rosa chinensis HOM05D000007 ORTHO05D000017 3.9e-16 89.7 346 28.3
RcHm_v2.0_Chr2g0107881 Rosa chinensis HOM05D000007 ORTHO05D000017 2.5e-15 87.0 381 25.7
FAN21G3856 Fragaria x ananassa HOM05D000007 ORTHO05D000017 4.3e-15 86.3 309 28.2
RcHm_v2.0_Chr5g0075921 Rosa chinensis HOM05D000007 ORTHO05D000017 5.6e-15 85.9 287 27.2
FvH4_3g14940 Fragaria vesca HOM05D000007 ORTHO05D000017 3.6e-14 83.2 164 35.4
FvH4_3g14941 Fragaria vesca HOM05D000007 ORTHO05D000017 3.6e-14 83.2 294 30.3
FvH4_3g42470 Fragaria vesca HOM05D000007 ORTHO05D000017 3.6e-14 83.2 109 44.0
RcHm_v2.0_Chr1g0380591 Rosa chinensis HOM05D000007 ORTHO05D000017 3.6e-14 83.2 140 37.9
RcHm_v2.0_Chr2g0107801 Rosa chinensis HOM05D000007 ORTHO05D000017 4.7e-14 82.8 355 27.0
RcHm_v2.0_Chr2g0101031 Rosa chinensis HOM05D000007 ORTHO05D000017 1.0e-13 81.6 166 33.7
RcHm_v2.0_Chr7g0226071 Rosa chinensis HOM05D000007 ORTHO05D000017 1.4e-13 81.3 128 33.6
FvH4_3g42420 Fragaria vesca HOM05D000007 ORTHO05D000017 2.3e-13 80.5 179 36.3
RcHm_v2.0_Chr3g0468171 Rosa chinensis HOM05D000007 ORTHO05D000017 3.1e-13 80.1 171 35.7
CiPaw.07G037600 Carya illinoinensis HOM05D000007 ORTHO05D000017 5.2e-13 79.3 161 32.9
FAN13G2247 Fragaria x ananassa HOM05D000007 ORTHO05D000017 6.8e-13 79.0 133 35.3
FAN21G0381 Fragaria x ananassa HOM05D000007 ORTHO05D000017 6.8e-13 79.0 328 27.4
RcHm_v2.0_Chr5g0059291 Rosa chinensis HOM05D000007 ORTHO05D000017 6.8e-13 79.0 178 32.0
FvH4_3g14950 Fragaria vesca HOM05D000007 ORTHO05D000017 1.2e-12 78.2 171 33.9
FAN11G2942 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.2e-12 78.2 356 25.3
FAN19G2319 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.2e-12 78.2 356 26.7
FAN23G0995 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.2e-12 78.2 164 37.2
RcHm_v2.0_Chr3g0475411 Rosa chinensis HOM05D000007 ORTHO05D000017 2.0e-12 77.4 298 26.2
FvH4_1g17560 Fragaria vesca HOM05D000007 ORTHO05D000017 2.6e-12 77.0 354 26.8
FvH4_6g14972 Fragaria vesca HOM05D000007 ORTHO05D000017 2.6e-12 77.0 166 35.5
FAN25G3068 Fragaria x ananassa HOM05D000007 ORTHO05D000017 2.6e-12 77.0 172 34.3
RcHm_v2.0_Chr3g0468191 Rosa chinensis HOM05D000007 ORTHO05D000017 2.6e-12 77.0 306 27.1
RcHm_v2.0_Chr5g0059111 Rosa chinensis HOM05D000007 ORTHO05D000017 2.6e-12 77.0 172 34.3
FvH4_3g42490 Fragaria vesca HOM05D000007 ORTHO05D000017 3.4e-12 76.6 196 34.2
FvH4_6g14900 Fragaria vesca HOM05D000007 ORTHO05D000017 3.4e-12 76.6 176 32.4
FAN11G0467 Fragaria x ananassa HOM05D000007 ORTHO05D000017 4.4e-12 76.3 171 32.7
FAN14G3180 Fragaria x ananassa HOM05D000007 ORTHO05D000017 4.4e-12 76.3 166 34.9
RcHm_v2.0_Chr2g0109781 Rosa chinensis HOM05D000007 ORTHO05D000017 7.5e-12 75.5 176 34.1
FAN14G5209 Fragaria x ananassa HOM05D000007 ORTHO05D000017 9.8e-12 75.1 176 35.2
Rhsim10G0008300 Rhododendron simsii HOM05D000007 ORTHO05D000017 9.8e-12 75.1 217 29.0
FAN14G0917 Fragaria x ananassa HOM05D000001 ORTHO05D009574 1.3e-11 74.7 177 32.8
FAN16G1371 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.3e-11 74.7 171 32.7
RcHm_v2.0_Chr5g0076201 Rosa chinensis HOM05D000007 ORTHO05D000017 1.3e-11 74.7 202 35.1
FvH4_1g18480 Fragaria vesca HOM05D000007 ORTHO05D000017 1.7e-11 74.3 204 31.9
FAN11G2621 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.7e-11 74.3 187 34.8
FAN14G4843 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.7e-11 74.3 170 34.7
FvH4_1g17550 Fragaria vesca HOM05D000007 ORTHO05D000017 3.7e-11 73.2 164 34.1
FvH4_3g15782 Fragaria vesca HOM05D000007 ORTHO05D000017 3.7e-11 73.2 169 35.5
FvH4_6g14790 Fragaria vesca HOM05D000007 ORTHO05D000017 3.7e-11 73.2 168 33.3
Prupe.7G008100 Prunus persica HOM05D000007 ORTHO05D000017 3.7e-11 73.2 175 31.4
PGR119G0312 Punica granatum HOM05D000007 ORTHO05D000017 3.7e-11 73.2 162 30.2
FAN11G1133 Fragaria x ananassa HOM05D000007 ORTHO05D000017 4.9e-11 72.8 70 52.9
RcHm_v2.0_Chr7g0211081 Rosa chinensis HOM05D000007 ORTHO05D000017 4.9e-11 72.8 161 35.4
FvH4_6g14993 Fragaria vesca HOM05D000007 ORTHO05D000017 6.4e-11 72.4 176 34.7
FvH4_1g17570 Fragaria vesca HOM05D000007 ORTHO05D000017 8.3e-11 72.0 180 33.3
RcHm_v2.0_Chr5g0075661 Rosa chinensis HOM05D000007 ORTHO05D000017 8.3e-11 72.0 162 35.8
RcHm_v2.0_Chr2g0086031 Rosa chinensis HOM05D000007 ORTHO05D013322 1.1e-10 71.6 176 34.7
RcHm_v2.0_Chr5g0059551 Rosa chinensis HOM05D000007 ORTHO05D000017 1.1e-10 71.6 167 29.3
CiPaw.07G037800 Carya illinoinensis HOM05D000007 ORTHO05D000017 1.4e-10 71.2 162 32.7
FAN14G2654 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.4e-10 71.2 102 39.2
RcHm_v2.0_Chr2g0109731 Rosa chinensis HOM05D000007 ORTHO05D000017 4.1e-10 69.7 169 33.1
RcHm_v2.0_Chr5g0059201 Rosa chinensis HOM05D000007 ORTHO05D000017 4.1e-10 69.7 125 36.0
FAN16G0014 Fragaria x ananassa HOM05D000007 ORTHO05D000017 5.4e-10 69.3 110 40.0
Dinv38256 Davidia involucrata HOM05D000007 ORTHO05D000017 7.0e-10 68.9 268 24.3
FvH4_3g32340 Fragaria vesca HOM05D000007 ORTHO05D000017 7.0e-10 68.9 189 31.2
FAN21G3249 Fragaria x ananassa HOM05D000007 ORTHO05D000017 7.0e-10 68.9 93 38.7
RcHm_v2.0_Chr2g0107781 Rosa chinensis HOM05D000007 ORTHO05D000017 7.0e-10 68.9 172 32.0
RcHm_v2.0_Chr2g0109761 Rosa chinensis HOM05D000007 ORTHO05D000017 7.0e-10 68.9 168 31.0
CiPaw.07G037500 Carya illinoinensis HOM05D000007 ORTHO05D000017 9.2e-10 68.6 158 33.5
FAN21G3343 Fragaria x ananassa HOM05D000007 ORTHO05D000017 9.2e-10 68.6 160 31.2
FvH4_3g42302 Fragaria vesca HOM05D000007 ORTHO05D000017 1.2e-09 68.2 66 48.5
FvH4_2g36710 Fragaria vesca HOM05D000007 ORTHO05D000017 1.6e-09 67.8 350 23.4
FAN25G1368 Fragaria x ananassa HOM05D000007 ORTHO05D000017 2.7e-09 67.0 265 26.8
FvH4_3g42303 Fragaria vesca HOM05D000007 ORTHO05D000017 3.5e-09 66.6 142 29.6
FvH4_5g30990 Fragaria vesca HOM05D000007 ORTHO05D000017 3.5e-09 66.6 208 27.4
FAN02G3183 Fragaria x ananassa HOM05D000007 ORTHO05D000017 3.5e-09 66.6 111 36.9
FAN21G2880 Fragaria x ananassa HOM05D000007 ORTHO05D000017 3.5e-09 66.6 103 35.0
FvH4_1g19570 Fragaria vesca HOM05D000007 ORTHO05D045667 4.6e-09 66.2 174 31.6
FAN09G0758 Fragaria x ananassa HOM05D000007 ORTHO05D000017 4.6e-09 66.2 111 36.9
FAN28G1020 Fragaria x ananassa HOM05D000007 ORTHO05D000017 6.0e-09 65.9 151 35.8
FvH4_1g18870 Fragaria vesca HOM05D000007 ORTHO05D000017 1.0e-08 65.1 239 28.9
FvH4_3g14954 Fragaria vesca HOM05D000007 ORTHO05D000017 1.0e-08 65.1 181 31.5
FAN11G3461 Fragaria x ananassa HOM05D001622 ORTHO05D002989 1.0e-08 65.1 180 31.7
FAN16G0375 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.0e-08 65.1 97 42.3
FvH4_1g19580 Fragaria vesca HOM05D000007 ORTHO05D000017 1.3e-08 64.7 174 31.6
FAN26G1843 Fragaria x ananassa HOM05D000001 ORTHO05D009432 1.3e-08 64.7 167 35.3
FvH4_2g33500 Fragaria vesca HOM05D000007 ORTHO05D000017 1.7e-08 64.3 213 28.6
FvH4_6g14980 Fragaria vesca HOM05D000007 ORTHO05D000017 1.7e-08 64.3 165 32.1
FAN26G2435 Fragaria x ananassa HOM05D000007 ORTHO05D046541 1.7e-08 64.3 176 32.4
FAN26G3331 Fragaria x ananassa HOM05D000007 ORTHO05D046541 1.7e-08 64.3 176 32.4
FvH4_3g32350 Fragaria vesca HOM05D000007 ORTHO05D000017 2.3e-08 63.9 171 31.0
FAN24G1725 Fragaria x ananassa HOM05D000007 ORTHO05D046568 2.3e-08 63.9 208 28.8
RcHm_v2.0_Chr6g0299781 Rosa chinensis HOM05D000007 ORTHO05D035269 2.3e-08 63.9 169 29.6
FvH4_6g14991 Fragaria vesca HOM05D000007 ORTHO05D000017 3.0e-08 63.5 101 38.6
FAN08G2632 Fragaria x ananassa HOM05D000007 ORTHO05D000017 3.0e-08 63.5 267 24.7
Thecc.08G124100 Theobroma cacao HOM05D000007 ORTHO05D000017 3.0e-08 63.5 134 26.1
FvH4_5g37874 Fragaria vesca HOM05D000007 ORTHO05D000017 3.9e-08 63.2 294 25.2
FAN17G2535 Fragaria x ananassa HOM05D000007 ORTHO05D000017 6.6e-08 62.4 155 33.5
PGSC0003DMG400002433 Solanum tuberosum HOM05D000007 ORTHO05D000017 6.6e-08 62.4 248 26.6
FAN04G1848 Fragaria x ananassa HOM05D000007 ORTHO05D011902 8.6e-08 62.0 168 31.5
Prupe.2G278400 Prunus persica HOM05D000007 ORTHO05D000017 8.6e-08 62.0 111 36.9
FAN09G3188 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.1e-07 61.6 165 32.7
FAN16G2932 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.1e-07 61.6 181 30.9
FAN20G2365 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.1e-07 61.6 170 31.8
RcHm_v2.0_Chr2g0153011 Rosa chinensis HOM05D000007 ORTHO05D000017 1.5e-07 61.2 329 20.7
PSO063G3342 Papaver somniferum HOM05D000007 ORTHO05D000017 1.9e-07 60.8 135 27.4
Peaxi162Scf00597g00412 Petunia axillaris HOM05D000007 ORTHO05D000017 3.3e-07 60.1 202 25.2
RcHm_v2.0_Chr1g0378141 Rosa chinensis HOM05D000007 ORTHO05D000017 3.3e-07 60.1 224 29.0
CAN.G1437.10 Capsicum annuum HOM05D000007 ORTHO05D000017 4.3e-07 59.7 291 24.7
FvH4_3g18870 Fragaria vesca HOM05D000007 ORTHO05D000039 4.3e-07 59.7 112 33.9
FAN19G0863 Fragaria x ananassa HOM05D000007 ORTHO05D045667 4.3e-07 59.7 174 29.9
Solyc01g067010.3 Solanum lycopersicum HOM05D000007 ORTHO05D000017 4.3e-07 59.7 177 27.7
Sopen01g028680 Solanum pennellii HOM05D000007 ORTHO05D000017 5.6e-07 59.3 175 28.0
FvH4_2g36701 Fragaria vesca HOM05D000007 ORTHO05D000017 7.3e-07 58.9 172 29.7
Lj2g0023053 Lotus japonicus HOM05D000007 ORTHO05D000017 7.3e-07 58.9 181 29.8
FvH4_3g24880 Fragaria vesca HOM05D000007 ORTHO05D000017 1.2e-06 58.2 179 29.6
FAN21G3529 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.6e-06 57.8 179 29.6
Medtr4g109270 Medicago truncatula HOM05D000007 ORTHO05D000017 1.6e-06 57.8 176 28.4
RcHm_v2.0_Chr5g0044501 Rosa chinensis HOM05D000007 ORTHO05D000017 1.6e-06 57.8 181 29.8
FAN11G0961 Fragaria x ananassa HOM05D000007 ORTHO05D000017 2.1e-06 57.4 179 29.1
Medtr4g023440 Medicago truncatula HOM05D000007 ORTHO05D000017 2.1e-06 57.4 255 27.1
Nn6g34491 Nelumbo nucifera HOM05D000007 ORTHO05D000017 2.1e-06 57.4 174 29.3
Prupe.6G214600 Prunus persica HOM05D000007 ORTHO05D000017 2.1e-06 57.4 246 26.8
FvH4_3g18082 Fragaria vesca HOM05D000007 ORTHO05D000017 2.8e-06 57.0 160 28.8
FAN16G3618 Fragaria x ananassa HOM05D000007 ORTHO05D000017 2.8e-06 57.0 160 28.8
FAN21G0670 Fragaria x ananassa HOM05D000870 ORTHO05D000715 2.8e-06 57.0 208 25.0
FAN23G0184 Fragaria x ananassa HOM05D000007 ORTHO05D000017 2.8e-06 57.0 97 40.2
PSO339G0651 Papaver somniferum HOM05D000007 ORTHO05D000017 2.8e-06 57.0 257 23.0
TPR.G31268 Trifolium pratense HOM05D000007 ORTHO05D000017 3.6e-06 56.6 179 27.9
Actinidia37850 Actinidia chinensis HOM05D000007 ORTHO05D000039 4.7e-06 56.2 178 28.1
Medtr8g032380 Medicago truncatula HOM05D000007 ORTHO05D000017 4.7e-06 56.2 171 29.2
Medtr8g433040 Medicago truncatula HOM05D000007 ORTHO05D000017 4.7e-06 56.2 171 29.2
TPR.G29656 Trifolium pratense HOM05D000007 ORTHO05D000017 6.2e-06 55.8 189 29.6
FAN05G2368 Fragaria x ananassa HOM05D000007 ORTHO05D000017 8.0e-06 55.5 166 33.1


User provided reference genes

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