Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_3g36110 Fragaria vesca HOM05D003862 ORTHO05D004398 5.3e-47 190.7 95 100.0
FAN11G3597 Fragaria x ananassa HOM05D003862 ORTHO05D004398 5.3e-47 190.7 95 100.0
FAN16G1598 Fragaria x ananassa HOM05D003862 ORTHO05D004398 5.3e-47 190.7 95 100.0
FAN21G0907 Fragaria x ananassa HOM05D003862 ORTHO05D004398 5.3e-47 190.7 95 100.0
FAN25G1864 Fragaria x ananassa HOM05D003862 ORTHO05D004398 5.3e-47 190.7 95 100.0
MD11G1108200 Malus domestica HOM05D003862 ORTHO05D004398 3.6e-43 177.9 93 92.5
RcHm_v2.0_Chr5g0064531 Rosa chinensis HOM05D003862 ORTHO05D004398 6.1e-43 177.2 93 92.5
Cfa011504 Carpinus fangiana HOM05D003862 ORTHO05D004398 7.9e-43 176.8 93 92.5
Prupe.6G077400 Prunus persica HOM05D003862 ORTHO05D004398 3.0e-42 174.9 93 91.4
CiPaw.14G068400 Carya illinoinensis HOM05D003862 ORTHO05D004398 5.1e-42 174.1 93 91.4
Glyma.12G063000 Glycine max HOM05D003862 ORTHO05D004398 8.8e-42 173.3 93 91.4
Lalb_Chr19g0137831 Lupinus albus HOM05D003862 ORTHO05D004398 8.8e-42 173.3 93 90.3
Lalb_Chr03g0026631 Lupinus albus HOM05D003862 ORTHO05D004398 2.0e-41 172.2 93 89.2
Glyma.11G139400 Glycine max HOM05D003862 ORTHO05D004398 3.3e-41 171.4 93 90.3
HanXRQChr05g0136091 Helianthus annuus HOM05D003862 ORTHO05D004398 9.7e-41 169.9 95 87.4
Medtr4g063925 Medicago truncatula HOM05D003862 ORTHO05D004398 9.7e-41 169.9 93 87.1
Ca_19161_v3 Cicer arietinum L. HOM05D003862 ORTHO05D004398 2.8e-40 168.3 93 87.1
PGR102G0842 Punica granatum HOM05D003862 ORTHO05D004398 2.8e-40 168.3 93 87.1
Phvul.011G064100 Phaseolus vulgaris HOM05D003862 ORTHO05D004398 4.8e-40 167.5 93 86.0
CSS0028919 Camellia sinensis var. sinensis HOM05D003862 ORTHO05D004398 6.3e-40 167.2 93 88.2
CSS0038231 Camellia sinensis var. sinensis HOM05D003862 ORTHO05D004398 6.3e-40 167.2 93 88.2
DCAR_030095 Daucus carota HOM05D003862 ORTHO05D004398 6.3e-40 167.2 93 88.2
Oeu014415.1 Olea europaea HOM05D003862 ORTHO05D004398 6.3e-40 167.2 93 88.2
PGR119G1270 Punica granatum HOM05D003862 ORTHO05D004398 6.3e-40 167.2 93 87.1
Lj3g0018643 Lotus japonicus HOM05D003862 ORTHO05D004398 8.2e-40 166.8 93 87.1
arahy.Tifrunner.gnm1.ann1.Q4VW5J Arachis hypogaea HOM05D003862 ORTHO05D004398 1.1e-39 166.4 93 87.1
Hund10643 Selenicereus undatus HOM05D003862 ORTHO05D004398 1.1e-39 166.4 93 86.0
vmacro20157 Vaccinium macrocarpon HOM05D003862 ORTHO05D004398 1.1e-39 166.4 93 87.1
CDE07G2069 Ceratophyllum demersum HOM05D003862 ORTHO05D004398 1.4e-39 166.0 93 86.0
Dinv17003 Davidia involucrata HOM05D003862 ORTHO05D004398 1.4e-39 166.0 93 87.1
Dinv42952 Davidia involucrata HOM05D003862 ORTHO05D004398 1.4e-39 166.0 93 87.1
Dinv43148 Davidia involucrata HOM05D003862 ORTHO05D004398 1.4e-39 166.0 93 87.1
Lsat_1_v5_gn_4_177081 Lactuca sativa HOM05D003862 ORTHO05D004398 1.4e-39 166.0 93 86.0
Lsat_1_v5_gn_5_170681 Lactuca sativa HOM05D003862 ORTHO05D004398 1.4e-39 166.0 93 86.0
Oeu032100.1 Olea europaea HOM05D003862 ORTHO05D004398 1.4e-39 166.0 93 87.1
HPP92_018126 Vanilla planifolia HOM05D003862 ORTHO05D004398 1.4e-39 166.0 93 86.0
HPP92_018144 Vanilla planifolia HOM05D003862 ORTHO05D004398 1.4e-39 166.0 93 86.0
arahy.Tifrunner.gnm1.ann1.PAA8CG Arachis hypogaea HOM05D003862 ORTHO05D004398 2.4e-39 165.2 93 86.0
Cc10_g12100 Coffea canephora HOM05D003862 ORTHO05D004398 3.1e-39 164.9 93 86.0
SalBow5G2575 Salvia bowleyana HOM05D003862 ORTHO05D004398 6.9e-39 163.7 93 84.9
Cfa016018 Carpinus fangiana HOM05D000273 ORTHO05D004398 1.2e-38 162.9 93 88.2
Migut.D00467 Erythranthe guttata HOM05D003862 ORTHO05D004398 1.2e-38 162.9 93 83.9
MBI05_g22042_MAGBIO Magnolia biondii HOM05D003862 ORTHO05D004398 1.2e-38 162.9 93 84.9
unitig_21.g20465 Utricularia gibba HOM05D003164 ORTHO05D003575 1.2e-38 162.9 93 82.8
Nitab4.5_0006455g0030 Nicotiana tabacum HOM05D003862 ORTHO05D004398 1.5e-38 162.5 93 86.0
TAR369G0814 Trochodendron aralioides HOM05D003862 ORTHO05D004398 1.5e-38 162.5 93 84.9
Cfa017379 Carpinus fangiana HOM05D003862 ORTHO05D004398 2.0e-38 162.2 93 84.9
Haze_20791 Corylus avellana HOM05D003862 ORTHO05D004398 2.0e-38 162.2 93 84.9
Hma1.2p1_0936F.1_g238710 Hydrangea macrophylla HOM05D003862 ORTHO05D004398 2.6e-38 161.8 93 83.9
Hma1.2p1_1513F.1_g287975 Hydrangea macrophylla HOM05D003862 ORTHO05D004398 2.6e-38 161.8 93 83.9
Nitab4.5_0002018g0010 Nicotiana tabacum HOM05D003862 ORTHO05D004398 2.6e-38 161.8 93 84.9
Os12g0571200 Oryza sativa ssp. japonica HOM05D003862 ORTHO05D004398 2.6e-38 161.8 93 82.8
TAR636G2804 Trochodendron aralioides HOM05D003862 ORTHO05D004398 2.6e-38 161.8 93 83.9
CANSAT54G2947 Cannabis sativa HOM05D003862 ORTHO05D004398 3.4e-38 161.4 94 86.2
CiPaw.09G192600 Carya illinoinensis HOM05D003862 ORTHO05D004398 4.5e-38 161.0 93 84.9
AUR62038108 Chenopodium quinoa HOM05D003862 ORTHO05D004398 4.5e-38 161.0 93 81.7
Nitab4.5_0000349g0310 Nicotiana tabacum HOM05D003862 ORTHO05D004398 4.5e-38 161.0 93 83.9
Nitab4.5_0001911g0090 Nicotiana tabacum HOM05D003862 ORTHO05D004398 4.5e-38 161.0 93 83.9
GSVIVG01034172001 Vitis vinifera HOM05D003862 ORTHO05D004398 4.5e-38 161.0 93 84.9
GSVIVG01024961001 Vitis vinifera HOM05D003862 ORTHO05D004398 5.9e-38 160.6 93 83.9
TPR.G17728 Trifolium pratense HOM05D003862 ORTHO05D004398 7.7e-38 160.2 93 86.0
EL10Ac5g11591 Beta vulgaris HOM05D003862 ORTHO05D004398 1.0e-37 159.8 93 81.7
Ah.02g115390 Amaranthus hybridus HOM05D003862 ORTHO05D004398 1.3e-37 159.5 93 80.6
Migut.D01636 Erythranthe guttata HOM05D003862 ORTHO05D004398 1.3e-37 159.5 93 81.7
TPR.G14480 Trifolium pratense HOM05D003862 ORTHO05D004398 1.3e-37 159.5 93 84.9
AUR62025808 Chenopodium quinoa HOM05D003862 ORTHO05D004398 1.7e-37 159.1 93 80.6
Sed0018689 Sechium edule HOM05D003862 ORTHO05D004398 1.7e-37 159.1 93 83.9
Sc05g0009640 Simmondsia chinensis HOM05D003862 ORTHO05D004398 2.2e-37 158.7 93 79.6
PSO063G5647 Papaver somniferum HOM05D003862 ORTHO05D004398 2.9e-37 158.3 93 78.5
PSO339G2698 Papaver somniferum HOM05D003862 ORTHO05D004398 2.9e-37 158.3 93 78.5
PSO384G2795 Papaver somniferum HOM05D003862 ORTHO05D004398 2.9e-37 158.3 93 78.5
TWI36G0288 Tripterygium wilfordii HOM05D003862 ORTHO05D004398 2.9e-37 158.3 93 82.8
ClCG10G021140 Citrullus lanatus HOM05D003862 ORTHO05D004398 3.8e-37 157.9 93 81.7
MELO3C009258.2 Cucumis melo HOM05D003862 ORTHO05D004398 3.8e-37 157.9 93 81.7
CsaV3_3G034900 Cucumis sativus L. HOM05D003862 ORTHO05D004398 3.8e-37 157.9 93 81.7
CAN.G1195.10 Capsicum annuum HOM05D003862 ORTHO05D004398 5.0e-37 157.5 93 80.6
PGSC0003DMG400019201 Solanum tuberosum HOM05D003862 ORTHO05D004398 5.0e-37 157.5 93 80.6
unitig_744.g24379 Utricularia gibba HOM05D003862 ORTHO05D004398 5.0e-37 157.5 93 79.6
Sed0022625 Sechium edule HOM05D003862 ORTHO05D004398 6.5e-37 157.1 93 82.8
Solyc10g086510.2 Solanum lycopersicum HOM05D003862 ORTHO05D004398 6.5e-37 157.1 93 80.6
Sopen10g035890 Solanum pennellii HOM05D003862 ORTHO05D004398 6.5e-37 157.1 93 80.6
TWI75G0870 Tripterygium wilfordii HOM05D003862 ORTHO05D004398 6.5e-37 157.1 93 81.7
ECA248G1530 Erigeron canadensis HOM05D003862 ORTHO05D004398 8.5e-37 156.8 93 79.6
Peaxi162Scf00330g00415 Petunia axillaris HOM05D003862 ORTHO05D004398 1.4e-36 156.0 93 78.5
RcHm_v2.0_Chr3g0466561 Rosa chinensis HOM05D003862 ORTHO05D004398 4.2e-36 154.5 95 81.1
Prupe.6G255300 Prunus persica HOM05D003862 ORTHO05D004398 5.5e-36 154.1 94 80.9
MD03G1093400 Malus domestica HOM05D003862 ORTHO05D004398 7.2e-36 153.7 81 91.4
Potri.012G039100 Populus trichocarpa HOM05D003862 ORTHO05D004398 9.4e-36 153.3 94 78.7
Sabra12G0027600 Salix brachista HOM05D003862 ORTHO05D004398 9.4e-36 153.3 94 78.7
TWI31G1113 Tripterygium wilfordii HOM05D003862 ORTHO05D004398 1.6e-35 152.5 93 79.6
MD04G1129100 Malus domestica HOM05D003862 ORTHO05D004398 2.1e-35 152.1 94 79.8
THA.LOC104799442 Tarenaya hassleriana HOM05D003862 ORTHO05D004398 2.1e-35 152.1 93 79.6
Gohir.D03G125700 Gossypium hirsutum HOM05D003862 ORTHO05D004398 2.7e-35 151.8 93 79.6
Gorai.003G131900 Gossypium raimondii HOM05D003862 ORTHO05D004398 2.7e-35 151.8 93 79.6
Manes.02G133100 Manihot esculenta HOM05D003862 ORTHO05D004398 3.6e-35 151.4 94 77.7
Rhsim05G0192800 Rhododendron simsii HOM05D003862 ORTHO05D004398 3.6e-35 151.4 116 69.0
Sp2g01740 Schrenkiella parvula HOM05D003862 ORTHO05D004398 3.6e-35 151.4 93 79.6
AT3G46560 Arabidopsis thaliana HOM05D003862 ORTHO05D004398 4.7e-35 151.0 93 79.6
Thhalv10002743m.g Eutrema salsugineum HOM05D003862 ORTHO05D004398 4.7e-35 151.0 93 79.6
MD12G1141800 Malus domestica HOM05D003862 ORTHO05D004398 4.7e-35 151.0 94 79.8
Ciclev10029679m.g Citrus clementina HOM05D003862 ORTHO05D004398 6.1e-35 150.6 93 78.5
THA.LOC104810779 Tarenaya hassleriana HOM05D003862 ORTHO05D004398 7.9e-35 150.2 93 78.5
Duzib168G1372 Durio zibethinus HOM05D003862 ORTHO05D004398 1.0e-34 149.8 93 78.5
Duzib170G0179 Durio zibethinus HOM05D003862 ORTHO05D004398 1.0e-34 149.8 93 78.5
Thhalv10023780m.g Eutrema salsugineum HOM05D003862 ORTHO05D004398 1.0e-34 149.8 93 78.5
Manes.01G173900 Manihot esculenta HOM05D003862 ORTHO05D004398 1.0e-34 149.8 94 76.6
Carub.0005s1283 Capsella rubella HOM05D003862 ORTHO05D004398 1.4e-34 149.4 93 78.5
Gohir.A03G042066 Gossypium hirsutum HOM05D003862 ORTHO05D004398 1.4e-34 149.4 93 77.4
Thecc.09G321500 Theobroma cacao HOM05D003862 ORTHO05D004398 1.8e-34 149.1 93 78.5
AL5G25420 Arabidopsis lyrata HOM05D003862 ORTHO05D004398 2.3e-34 148.7 93 78.5
Gohir.D13G233100 Gossypium hirsutum HOM05D003862 ORTHO05D004398 2.3e-34 148.7 93 77.4
Gorai.013G263900 Gossypium raimondii HOM05D003862 ORTHO05D004398 2.3e-34 148.7 93 77.4
BcaC02g10413 Brassica carinata HOM05D003862 ORTHO05D004398 3.9e-34 147.9 93 78.5
C04p29160 Brassica napus HOM05D003862 ORTHO05D004398 3.9e-34 147.9 93 78.5
BolC4t24450H Brassica oleracea HOM05D003862 ORTHO05D004398 3.9e-34 147.9 93 78.5
Cpa.g.sc81.150 Carica papaya HOM05D003862 ORTHO05D004398 3.9e-34 147.9 93 77.4
Duzib150G0578 Durio zibethinus HOM05D003862 ORTHO05D004398 5.2e-34 147.5 93 77.4
Gohir.A13G227500 Gossypium hirsutum HOM05D003862 ORTHO05D004398 8.8e-34 146.7 93 76.3
HanXRQChr01g0009491 Helianthus annuus HOM05D003862 ORTHO05D004398 8.8e-34 146.7 94 73.4
BcaB07g31364 Brassica carinata HOM05D003862 ORTHO05D004398 1.1e-33 146.4 93 77.4
COL.COLO4_18508 Corchorus olitorius HOM05D003862 ORTHO05D004398 1.1e-33 146.4 93 76.3
Hund04959 Selenicereus undatus HOM05D003862 ORTHO05D004398 2.0e-33 145.6 93 74.2
Actinidia05313 Actinidia chinensis HOM05D003862 ORTHO05D004398 2.6e-33 145.2 87 81.6
A03p68180 Brassica napus HOM05D003862 ORTHO05D004398 2.6e-33 145.2 93 77.4
BraA01t02647Z Brassica rapa HOM05D003862 ORTHO05D004398 2.6e-33 145.2 93 77.4
CARHR155240 Cardamine hirsuta HOM05D003862 ORTHO05D004398 4.4e-33 144.4 93 75.3
Peaxi162Scf01517g00013 Petunia axillaris HOM05D003862 ORTHO05D004398 4.4e-33 144.4 91 74.7
Carub.0003s2691 Capsella rubella HOM05D003862 ORTHO05D004398 5.7e-33 144.1 93 75.3
BcaC04g22454 Brassica carinata HOM05D003862 ORTHO05D004398 7.4e-33 143.7 93 75.3
A09p15900 Brassica napus HOM05D003862 ORTHO05D004398 7.4e-33 143.7 93 75.3
C09p19140 Brassica napus HOM05D003862 ORTHO05D004398 7.4e-33 143.7 93 75.3
BolC9t54821H Brassica oleracea HOM05D003862 ORTHO05D004398 7.4e-33 143.7 93 75.3
BraA09t37226Z Brassica rapa HOM05D003862 ORTHO05D004398 7.4e-33 143.7 93 75.3
FAN02G2377 Fragaria x ananassa HOM05D003862 ORTHO05D004398 7.4e-33 143.7 94 75.5
FAN09G4075 Fragaria x ananassa HOM05D003862 ORTHO05D004398 7.4e-33 143.7 94 75.5
VMungo1127G0240 Vigna mungo HOM05D003862 ORTHO05D004398 7.4e-33 143.7 81 85.2
Aa31sc23G440 Aethionema arabicum HOM05D003862 ORTHO05D004398 9.7e-33 143.3 93 73.1
FvH4_6g13690 Fragaria vesca HOM05D003862 ORTHO05D004398 3.7e-32 141.4 94 74.5
Aa31LG4G15560 Aethionema arabicum HOM05D003862 ORTHO05D004398 6.3e-32 140.6 93 74.2
Mapoly0020s0168 Marchantia polymorpha HOM05D003862 ORTHO05D004398 4.1e-31 137.9 86 74.4
ATR0559G041 Amborella trichopoda HOM05D003862 ORTHO05D004398 5.3e-31 137.5 81 80.2
Pp3c24_15930 Physcomitrium patens HOM05D003862 ORTHO05D004398 5.3e-31 137.5 86 75.6
Aqoxy4G02928 Aquilegia oxysepala HOM05D003862 ORTHO05D004398 2.0e-30 135.6 93 67.7
Phvul.L001624 Phaseolus vulgaris HOM05D003862 ORTHO05D004398 2.0e-30 135.6 94 66.0
vmacro08654 Vaccinium macrocarpon HOM05D003862 ORTHO05D004398 2.0e-30 135.6 149 52.3
AagrBONN_evm.TU.Sc2ySwM_368.1516 Anthoceros agrestis HOM05D003862 ORTHO05D004398 2.6e-30 135.2 86 72.1
Glyma.03G082300 Glycine max HOM05D003862 ORTHO05D004398 2.6e-30 135.2 95 65.3
arahy.Tifrunner.gnm1.ann1.817FQF Arachis hypogaea HOM05D003862 ORTHO05D004398 1.3e-29 132.9 91 69.2
arahy.Tifrunner.gnm1.ann1.JG2TRE Arachis hypogaea HOM05D003862 ORTHO05D004398 1.3e-29 132.9 91 69.2
Lj3g0015625 Lotus japonicus HOM05D003862 ORTHO05D004398 2.2e-29 132.1 93 65.6
Actinidia11257 Actinidia chinensis HOM05D003862 ORTHO05D004398 5.0e-29 131.0 75 86.7
arahy.Tifrunner.gnm1.ann1.GD7L84 Arachis hypogaea HOM05D003862 ORTHO05D004398 6.5e-29 130.6 91 68.1
Haze_24096 Corylus avellana HOM05D003862 ORTHO05D004398 1.1e-28 129.8 70 90.0
arahy.Tifrunner.gnm1.ann1.L1N949 Arachis hypogaea HOM05D003862 ORTHO05D004398 1.5e-28 129.4 91 67.0
QL01p031927 Quercus lobata HOM05D003862 ORTHO05D004398 2.5e-28 128.6 62 96.8
Pp3c20_6200 Physcomitrium patens HOM05D003862 ORTHO05D004398 7.2e-28 127.1 86 69.8
TPR.G5603 Trifolium pratense HOM05D003862 ORTHO05D004398 2.1e-27 125.6 94 59.6
QL07p048307 Quercus lobata HOM05D003862 ORTHO05D004398 2.7e-27 125.2 158 46.8
PGR004G0102 Punica granatum HOM05D003862 ORTHO05D004398 6.1e-27 124.0 90 66.7
SMO367G0781 Selaginella moellendorffii HOM05D003862 ORTHO05D004398 6.1e-27 124.0 86 68.6
Psat7g239120 Pisum sativum HOM05D003862 ORTHO05D004398 6.7e-26 120.6 94 56.4
Eucgr.A01265 Eucalyptus grandis HOM05D003862 ORTHO05D004398 1.2e-25 119.8 87 67.8
Nn2g14532 Nelumbo nucifera HOM05D003862 ORTHO05D004398 2.0e-25 119.0 68 82.4
FAN27G3302 Fragaria x ananassa HOM05D003862 ORTHO05D004398 3.3e-25 118.2 94 63.8
Dinv37171 Davidia involucrata HOM05D003862 ORTHO05D004398 9.7e-25 116.7 61 90.2
Sc20g0004910 Simmondsia chinensis HOM05D003862 ORTHO05D004398 1.3e-24 116.3 62 87.1
CBR_g46834 Chara braunii HOM05D003862 ORTHO05D004398 2.2e-24 115.5 93 61.3
CAN.G326.7 Capsicum annuum HOM05D003862 ORTHO05D004398 2.8e-24 115.2 62 85.5
SalBow2G1777 Salvia bowleyana HOM05D003862 ORTHO05D004398 1.4e-23 112.8 93 61.3
MCO12G250 Micromonas commoda HOM05D003862 ORTHO05D004398 1.8e-23 112.5 92 56.5
MBI14_g20103_MAGBIO Magnolia biondii HOM05D003862 ORTHO05D004398 1.6e-22 109.4 93 65.6
unitig_6.g29269 Utricularia gibba HOM05D003862 ORTHO05D004398 3.8e-21 104.8 90 60.0
unitig_747.g21430 Utricularia gibba HOM05D003862 ORTHO05D004398 3.8e-21 104.8 90 60.0
FAN14G4115 Fragaria x ananassa HOM05D003862 ORTHO05D004398 5.0e-21 104.4 94 61.7
Peaxi162Scf00165g00129 Petunia axillaris HOM05D003862 ORTHO05D004398 1.1e-20 103.2 84 63.1
Solyc08g048070.1 Solanum lycopersicum HOM05D003862 ORTHO05D004398 1.6e-19 99.4 67 70.1
Cre01.g033400 Chlamydomonas reinhardtii HOM05D003862 ORTHO05D004398 2.4e-15 85.5 79 48.1
PRCOL_00005138 Prasinoderma coloniale HOM05D003862 ORTHO05D004398 5.4e-15 84.3 79 49.4
Medtr4g021715 Medicago truncatula HOM05D003862 ORTHO05D004398 3.5e-14 81.6 94 43.6
Os05g0111100 Oryza sativa ssp. japonica HOM05D003862 ORTHO05D004398 7.2e-12 73.9 80 45.0


User provided reference genes

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