Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G0874 Fragaria x ananassa HOM05D005360 ORTHO05D006501 2.8e-146 521.9 262 100.0
FAN11G3336 Fragaria x ananassa HOM05D005360 ORTHO05D006501 5.2e-145 517.7 262 99.2
FvH4_3g30230 Fragaria vesca HOM05D005360 ORTHO05D006501 1.6e-141 506.1 274 94.5
RcHm_v2.0_Chr5g0056101 Rosa chinensis HOM05D005360 ORTHO05D006501 1.3e-122 443.4 274 81.0
MD11G1152100 Malus domestica HOM05D005360 ORTHO05D006501 2.3e-100 369.4 271 71.2
MD03G1130500 Malus domestica HOM05D005360 ORTHO05D006501 1.1e-97 360.5 272 69.1
CANSAT64G2995 Cannabis sativa HOM05D005360 ORTHO05D006501 3.8e-87 325.5 278 61.9
CANSAT64G2904 Cannabis sativa HOM05D005360 ORTHO05D006501 3.2e-86 322.4 278 61.5
Haze_23502 Corylus avellana HOM05D005360 ORTHO05D006501 3.6e-85 318.9 285 61.8
Rhsim13G0102900 Rhododendron simsii HOM05D005360 ORTHO05D006501 6.7e-84 314.7 252 62.3
QL01p014311 Quercus lobata HOM05D005360 ORTHO05D006501 8.8e-84 314.3 275 60.7
Ca_01695_v3 Cicer arietinum L. HOM05D005360 ORTHO05D006501 5.7e-83 311.6 273 59.7
TWI31G0773 Tripterygium wilfordii HOM05D005360 ORTHO05D006501 1.7e-82 310.1 267 60.7
Hma1.2p1_0051F.1_g029700 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 2.2e-82 309.7 259 61.8
vmacro03239 Vaccinium macrocarpon HOM05D005360 ORTHO05D006501 2.2e-82 309.7 244 64.8
GSVIVG01031434001 Vitis vinifera HOM05D005360 ORTHO05D006501 2.8e-82 309.3 278 60.4
Thecc.09G295200 Theobroma cacao HOM05D005360 ORTHO05D006501 4.8e-82 308.5 268 61.9
Manes.11G154700 Manihot esculenta HOM05D005360 ORTHO05D006501 1.1e-81 307.4 242 64.9
CSS0014580 Camellia sinensis var. sinensis HOM05D005360 ORTHO05D006501 1.8e-81 306.6 273 59.0
Glyma.13G219600 Glycine max HOM05D005360 ORTHO05D006501 1.8e-81 306.6 274 59.1
Dinv29396 Davidia involucrata HOM05D005360 ORTHO05D006501 7.0e-81 304.7 274 57.7
CiPaw.14G105400 Carya illinoinensis HOM05D005360 ORTHO05D006501 2.6e-80 302.8 275 60.4
Lsat_1_v5_gn_6_42160 Lactuca sativa HOM05D005360 ORTHO05D006501 2.6e-80 302.8 264 59.1
DCAR_015495 Daucus carota HOM05D005360 ORTHO05D006501 5.9e-80 301.6 274 58.4
Cc04_g14880 Coffea canephora HOM05D005360 ORTHO05D006501 2.9e-79 299.3 279 58.1
TPR.G32397 Trifolium pratense HOM05D005360 ORTHO05D006501 3.8e-79 298.9 274 56.9
Ciclev10029076m.g Citrus clementina HOM05D005360 ORTHO05D006501 5.0e-79 298.5 264 59.8
Lj1A216T24 Lonicera japonica HOM05D005360 ORTHO05D006501 5.0e-79 298.5 273 57.1
TAR633G1180 Trochodendron aralioides HOM05D005360 ORTHO05D006501 5.0e-79 298.5 270 58.5
Ah.01g016120 Amaranthus hybridus HOM05D005360 ORTHO05D006501 2.5e-78 296.2 281 57.3
Hund07728 Selenicereus undatus HOM05D005360 ORTHO05D006501 2.5e-78 296.2 278 56.8
Lj3g0014716 Lotus japonicus HOM05D005360 ORTHO05D006501 5.5e-78 295.0 275 56.0
Eucgr.B03910 Eucalyptus grandis HOM05D005360 ORTHO05D006501 7.2e-78 294.7 273 58.2
Phvul.006G166300 Phaseolus vulgaris HOM05D005360 ORTHO05D006501 1.6e-77 293.5 274 56.2
Sed0004275 Sechium edule HOM05D005360 ORTHO05D006501 1.6e-77 293.5 206 67.5
AUR62031793 Chenopodium quinoa HOM05D005360 ORTHO05D006501 2.7e-77 292.7 221 65.6
Nitab4.5_0000442g0050 Nicotiana tabacum HOM05D005360 ORTHO05D006501 4.7e-77 292.0 276 56.9
PGSC0003DMG400000427 Solanum tuberosum HOM05D005360 ORTHO05D006501 4.7e-77 292.0 232 62.5
Atru.chr3.3432 Acer truncatum HOM05D005360 ORTHO05D006501 8.0e-77 291.2 259 60.6
Lalb_Chr24g0395031 Lupinus albus HOM05D005360 ORTHO05D006501 8.0e-77 291.2 272 55.5
MSTRG.21078 Avicennia marina HOM05D005360 ORTHO05D006501 1.8e-76 290.0 273 55.3
CAN.G546.64 Capsicum annuum HOM05D005360 ORTHO05D006501 1.8e-76 290.0 238 61.3
Actinidia24162 Actinidia chinensis HOM05D005360 ORTHO05D006501 2.3e-76 289.7 262 58.4
MBI01_g19099_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 6.7e-76 288.1 246 59.8
Sopen11g026340 Solanum pennellii HOM05D005360 ORTHO05D006501 8.8e-76 287.7 231 61.9
EL10Ac9g21036 Beta vulgaris HOM05D005360 ORTHO05D006501 2.0e-75 286.6 278 57.2
Solyc11g066610.2 Solanum lycopersicum HOM05D005360 ORTHO05D006501 2.6e-75 286.2 231 61.9
Nn6g35157 Nelumbo nucifera HOM05D005360 ORTHO05D006501 4.4e-75 285.4 277 54.9
Sabra09G0000500 Salix brachista HOM05D005360 ORTHO05D006501 7.4e-75 284.6 240 61.2
SGA_v2.0_scaffold193G40720 Striga asiatica HOM05D005360 ORTHO05D006501 1.3e-74 283.9 251 56.6
HanXRQChr13g0403531 Helianthus annuus HOM05D005360 ORTHO05D006501 3.7e-74 282.3 276 55.4
Medtr2g084545 Medicago truncatula HOM05D005360 ORTHO05D006501 4.8e-74 282.0 268 55.6
Potri.009G002000 Populus trichocarpa HOM05D005360 ORTHO05D006501 6.3e-74 281.6 240 60.8
ATR0665G582 Amborella trichopoda HOM05D005360 ORTHO05D006501 8.2e-74 281.2 237 59.5
Psat5g252440 Pisum sativum HOM05D005360 ORTHO05D006501 8.2e-74 281.2 277 53.8
Peaxi162Scf00150g00315 Petunia axillaris HOM05D005360 ORTHO05D006501 1.4e-73 280.4 229 61.1
Gorai.001G118400 Gossypium raimondii HOM05D005360 ORTHO05D006501 1.8e-73 280.0 242 61.2
Migut.D02306 Erythranthe guttata HOM05D005360 ORTHO05D006501 3.1e-73 279.3 232 59.1
Gohir.D07G110200 Gossypium hirsutum HOM05D005360 ORTHO05D006501 5.3e-73 278.5 242 60.7
MELO3C021472.2 Cucumis melo HOM05D005360 ORTHO05D006501 1.2e-72 277.3 198 66.7
CsaV3_6G014530 Cucumis sativus L. HOM05D005360 ORTHO05D006501 4.5e-72 275.4 198 66.7
Gohir.A07G106300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.0e-71 274.2 223 63.2
Aqoxy1G01027 Aquilegia oxysepala HOM05D005360 ORTHO05D006501 6.5e-71 271.6 267 51.7
CARHR008050 Cardamine hirsuta HOM05D005360 ORTHO05D006501 6.5e-71 271.6 253 55.3
AT1G08220 Arabidopsis thaliana HOM05D005360 ORTHO05D006501 1.1e-70 270.8 274 52.6
Thhalv10008429m.g Eutrema salsugineum HOM05D005360 ORTHO05D006501 4.2e-70 268.9 252 54.8
MBI01_g31369_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 5.5e-70 268.5 246 56.9
Sc21g0004290 Simmondsia chinensis HOM05D005360 ORTHO05D006501 5.5e-70 268.5 275 53.5
PGR102G1574 Punica granatum HOM05D005360 ORTHO05D006501 7.2e-70 268.1 267 55.8
THA.LOC104826399 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 9.4e-70 267.7 280 52.1
CDE09G0858 Ceratophyllum demersum HOM05D005360 ORTHO05D006501 1.2e-69 267.3 245 54.3
Sp1g06870 Schrenkiella parvula HOM05D005360 ORTHO05D006501 6.1e-69 265.0 268 52.6
AL1G18630 Arabidopsis lyrata HOM05D005360 ORTHO05D006501 8.0e-69 264.6 252 54.4
C08p50100 Brassica napus HOM05D005360 ORTHO05D006501 8.0e-69 264.6 271 53.5
BolC8t52540H Brassica oleracea HOM05D005360 ORTHO05D006501 8.0e-69 264.6 271 53.5
PSO063G2369 Papaver somniferum HOM05D005360 ORTHO05D006501 1.4e-68 263.8 266 53.0
SalBow6G0303 Salvia bowleyana HOM05D005360 ORTHO05D006501 1.4e-68 263.8 237 57.0
COL.COLO4_19249 Corchorus olitorius HOM05D000737 ORTHO05D000581 2.3e-68 263.1 188 70.2
Duzib168G1167 Durio zibethinus HOM05D005360 ORTHO05D006501 2.3e-68 263.1 256 57.4
PSO339G5504 Papaver somniferum HOM05D005360 ORTHO05D006501 2.3e-68 263.1 265 52.8
A08p35270 Brassica napus HOM05D005360 ORTHO05D006501 3.0e-68 262.7 252 54.0
BraA08t35436Z Brassica rapa HOM05D005360 ORTHO05D006501 3.0e-68 262.7 252 54.0
THA.LOC104800565 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 2.6e-67 259.6 233 57.5
C08p03560 Brassica napus HOM05D005360 ORTHO05D006501 5.7e-67 258.5 271 51.3
Carub.0001s0758 Capsella rubella HOM05D005360 ORTHO05D006501 5.7e-67 258.5 252 52.4
Aa31LG1G18020 Aethionema arabicum HOM05D005360 ORTHO05D006501 1.3e-66 257.3 210 61.4
BcaC07g42518 Brassica carinata HOM05D005360 ORTHO05D006501 1.8e-65 253.4 271 50.9
BolC8t47160H Brassica oleracea HOM05D005360 ORTHO05D006501 1.8e-65 253.4 271 50.6
Prupe.6G115300 Prunus persica HOM05D005360 ORTHO05D006501 1.3e-63 247.3 160 75.0
arahy.Tifrunner.gnm1.ann1.9X9VA5 Arachis hypogaea HOM05D005360 ORTHO05D006501 6.8e-60 235.0 270 50.0
Os05g0176500 Oryza sativa ssp. japonica HOM05D005360 ORTHO05D006501 4.4e-59 232.3 221 51.6
unitig_899.g14961 Utricularia gibba HOM05D005360 ORTHO05D006501 4.4e-59 232.3 234 50.9
BcaB03g13345 Brassica carinata HOM05D005360 ORTHO05D006501 1.7e-58 230.3 269 47.6
Gohir.A07G000166 Gossypium hirsutum HOM05D005360 ORTHO05D006501 3.1e-57 226.1 189 60.3
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 9.1e-57 224.6 241 51.5
SHI06160 Sapria himalayana HOM05D005360 ORTHO05D006501 9.1e-57 224.6 206 55.8
HPP92_015033 Vanilla planifolia HOM05D005360 ORTHO05D006501 2.0e-56 223.4 205 54.1
Gohir.1Z049633 Gossypium hirsutum HOM05D005360 ORTHO05D006501 6.6e-55 218.4 183 60.1
Zm00001eb345720 Zea mays HOM05D005360 ORTHO05D006501 1.5e-54 217.2 209 50.2
TAR633G1639 Trochodendron aralioides HOM05D005360 ORTHO05D006501 6.8e-52 208.4 221 51.6
HPP92_015112 Vanilla planifolia HOM05D005360 ORTHO05D006501 1.2e-48 197.6 202 50.5
Hma1.2p1_0051F.1_g029710 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 3.5e-48 196.1 136 72.8
Gohir.A02G097303 Gossypium hirsutum HOM05D005360 ORTHO05D006501 5.0e-47 192.2 209 52.6
Oeu026987.1 Olea europaea HOM05D005360 ORTHO05D006501 6.8e-44 181.8 122 71.3
Gohir.A05G054800 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.3e-39 166.8 203 48.8
SMO116G0134 Selaginella moellendorffii HOM05D005360 ORTHO05D006501 1.5e-35 154.1 208 40.4
FAN09G1017 Fragaria x ananassa HOM05D005360 ORTHO05D006501 9.8e-35 151.4 112 72.3
VMungo0540G0253 Vigna mungo HOM05D005360 ORTHO05D006501 2.1e-32 143.7 179 45.3
CiPaw.13G143100 Carya illinoinensis HOM05D005360 ORTHO05D006501 4.7e-29 132.5 118 56.8
CiPaw.13G142900 Carya illinoinensis HOM05D005360 ORTHO05D006501 8.1e-29 131.7 127 53.5
Gohir.A10G063101 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.8e-28 130.6 144 50.7
FAN09G0332 Fragaria x ananassa HOM05D005360 ORTHO05D006501 2.3e-28 130.2 74 85.1
Cpa.g.sc2403.1 Carica papaya HOM05D005360 ORTHO05D006501 1.3e-23 114.4 146 45.2
AUR62023988 Chenopodium quinoa HOM05D005360 ORTHO05D006501 1.1e-22 111.3 87 62.1
FAN04G1623 Fragaria x ananassa HOM05D005360 ORTHO05D006501 2.5e-22 110.2 66 77.3
Gohir.A11G191650 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.5e-22 110.2 246 36.2
Gohir.A06G034300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 4.3e-22 109.4 108 51.9
Gohir.A09G043650 Gossypium hirsutum HOM05D005360 ORTHO05D006501 7.3e-22 108.6 124 48.4
Gohir.A06G100002 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.6e-19 100.1 71 69.0
Gohir.A05G334300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.3e-18 97.8 101 50.5
SEGI_40723 Sequoiadendron giganteum HOM05D005360 ORTHO05D006501 4.3e-14 82.8 97 42.3
Zm00001eb137350 Zea mays HOM05D005360 ORTHO05D006501 4.3e-14 82.8 82 43.9
Gohir.A06G133300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 9.6e-14 81.6 101 45.5
Gohir.A06G038884 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.6e-13 80.9 123 40.7
BcaC07g37801 Brassica carinata HOM05D005360 ORTHO05D006501 6.2e-13 79.0 97 43.3
Eucgr.L03607 Eucalyptus grandis HOM05D005360 ORTHO05D006501 4.0e-12 76.3 66 50.0
Gohir.A11G000150 Gossypium hirsutum HOM05D005360 ORTHO05D026494 5.3e-12 75.9 87 48.3
Gohir.1Z049508 Gossypium hirsutum HOM05D005360 ORTHO05D006501 3.4e-11 73.2 100 44.0
FvH4_1g23850 Fragaria vesca HOM05D005360 ORTHO05D006501 2.4e-09 67.0 113 41.6
Actinidia07196 Actinidia chinensis HOM05D005360 ORTHO05D006501 4.2e-09 66.2 128 30.5
Gohir.A01G109901 Gossypium hirsutum HOM05D005360 ORTHO05D006501 8.7e-07 58.5 49 61.2
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 8.7e-07 58.5 43 67.4
Cfa022886 Carpinus fangiana HOM05D005360 ORTHO05D006501 2.5e-06 57.0 209 27.8


User provided reference genes

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