Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G0778 Fragaria x ananassa HOM05D011291 ORTHO05D005737 0.0e+00 1425.6 739 100.0
FvH4_3g26940 Fragaria vesca HOM05D004779 ORTHO05D005737 1.7e-172 610.5 368 94.0
FAN11G2927 Fragaria x ananassa HOM05D004779 ORTHO05D005737 1.3e-169 600.9 372 92.5
FAN25G2723 Fragaria x ananassa HOM05D004779 ORTHO05D005737 1.9e-168 597.0 374 92.5
FAN16G1882 Fragaria x ananassa HOM05D004779 ORTHO05D005737 2.8e-167 593.2 374 92.0
FAN21G1171 Fragaria x ananassa HOM05D004779 ORTHO05D005737 4.3e-160 569.3 341 95.0
RcHm_v2.0_Chr5g0049381 Rosa chinensis HOM05D004779 ORTHO05D005737 4.6e-154 549.3 368 84.8
MD11G1177500 Malus domestica HOM05D004779 ORTHO05D005737 3.8e-132 476.5 380 75.3
Prupe.6G149600 Prunus persica HOM05D004779 ORTHO05D005737 8.4e-132 475.3 385 75.6
MD03G1161400 Malus domestica HOM05D004779 ORTHO05D005737 2.0e-125 454.1 376 72.9
CiPaw.13G125400 Carya illinoinensis HOM05D004779 ORTHO05D005737 1.0e-116 425.2 383 68.9
Glyma.14G044700 Glycine max HOM05D004779 ORTHO05D005737 2.3e-113 414.1 372 65.9
Glyma.02G271700 Glycine max HOM05D004779 ORTHO05D005737 1.1e-112 411.8 373 67.3
Duzib170G1005 Durio zibethinus HOM05D004779 ORTHO05D005737 2.5e-112 410.6 383 66.3
Nn2g14463 Nelumbo nucifera HOM05D004779 ORTHO05D005737 1.3e-111 408.3 373 67.3
GSVIVG01037513001 Vitis vinifera HOM05D004779 ORTHO05D005737 2.8e-111 407.1 373 67.6
CANSAT54G2495 Cannabis sativa HOM05D004779 ORTHO05D005737 8.2e-111 405.6 384 65.4
MELO3C017381.2 Cucumis melo HOM05D004779 ORTHO05D005737 4.5e-109 399.8 375 66.1
ClCG06G014140 Citrullus lanatus HOM05D004779 ORTHO05D005737 1.7e-108 397.9 374 65.8
Phvul.008G210200 Phaseolus vulgaris HOM05D004779 ORTHO05D005737 5.0e-108 396.4 372 64.0
Ca_06128_v3 Cicer arietinum L. HOM05D004779 ORTHO05D005737 1.9e-107 394.4 371 65.2
Duzib168G2107 Durio zibethinus HOM05D004779 ORTHO05D005737 2.5e-107 394.0 384 64.8
arahy.Tifrunner.gnm1.ann1.3IJ79N Arachis hypogaea HOM05D004779 ORTHO05D005737 3.2e-107 393.7 371 64.7
Rhsim13G0199300 Rhododendron simsii HOM05D004779 ORTHO05D005737 3.2e-107 393.7 393 63.1
Hma1.2p1_0218F.1_g092300 Hydrangea macrophylla HOM05D004779 ORTHO05D005737 4.2e-107 393.3 372 65.1
VMungo0647G2327 Vigna mungo HOM05D004779 ORTHO05D005737 5.5e-107 392.9 372 64.0
Dinv32142 Davidia involucrata HOM05D004779 ORTHO05D005737 1.6e-106 391.3 372 66.1
Sed0007784 Sechium edule HOM05D004779 ORTHO05D005737 3.5e-106 390.2 375 64.3
Sed0027738 Sechium edule HOM05D004779 ORTHO05D005737 1.3e-105 388.3 374 63.4
CSS0005993 Camellia sinensis var. sinensis HOM05D004779 ORTHO05D005737 1.8e-105 387.9 373 64.1
CSS0044664 Camellia sinensis var. sinensis HOM05D004779 ORTHO05D005737 1.8e-105 387.9 373 64.1
arahy.Tifrunner.gnm1.ann1.GQ8P42 Arachis hypogaea HOM05D004779 ORTHO05D005737 3.0e-105 387.1 371 64.2
Lalb_Chr04g0249841 Lupinus albus HOM05D004779 ORTHO05D005737 1.5e-104 384.8 371 63.1
Thecc.09G267300 Theobroma cacao HOM05D004779 ORTHO05D005737 4.3e-104 383.3 386 63.0
CsaV3_1G004540 Cucumis sativus L. HOM05D004779 ORTHO05D005737 4.8e-103 379.8 374 63.6
Medtr5g086790 Medicago truncatula HOM05D004779 ORTHO05D005737 8.2e-103 379.0 368 62.5
Lj2g0019509 Lotus japonicus HOM05D004779 ORTHO05D005737 2.4e-102 377.5 371 62.8
TAR369G0205 Trochodendron aralioides HOM05D004779 ORTHO05D005737 5.3e-102 376.3 371 63.1
Lalb_Chr10g0105761 Lupinus albus HOM05D004779 ORTHO05D005737 3.4e-101 373.6 371 62.0
Sopen11g029350 Solanum pennellii HOM05D004779 ORTHO05D005737 7.7e-101 372.5 377 63.4
AUR62020193 Chenopodium quinoa HOM05D004779 ORTHO05D005737 1.3e-100 371.7 389 60.9
Eucgr.J00599 Eucalyptus grandis HOM05D004779 ORTHO05D005737 1.3e-100 371.7 386 63.5
Cfa005492 Carpinus fangiana HOM05D004779 ORTHO05D005737 2.9e-100 370.5 414 60.1
Atru.chr3.3301 Acer truncatum HOM05D004779 ORTHO05D005737 6.5e-100 369.4 376 62.8
Solyc11g071680.2 Solanum lycopersicum HOM05D004779 ORTHO05D005737 1.4e-99 368.2 377 62.9
Gohir.D07G118400 Gossypium hirsutum HOM05D004779 ORTHO05D005737 7.2e-99 365.9 376 62.8
COL.COLO4_25354 Corchorus olitorius HOM05D004779 ORTHO05D005737 3.9e-97 360.1 389 59.9
Sc06g0008600 Simmondsia chinensis HOM05D004779 ORTHO05D005737 5.1e-97 359.8 373 59.2
Gohir.A07G114480 Gossypium hirsutum HOM05D004779 ORTHO05D005737 6.7e-97 359.4 378 61.6
TPR.G13298 Trifolium pratense HOM05D004779 ORTHO05D005737 6.7e-97 359.4 375 61.3
Potri.009G155400 Populus trichocarpa HOM05D004779 ORTHO05D005737 1.1e-96 358.6 389 59.6
Ciclev10027942m.g Citrus clementina HOM05D004779 ORTHO05D005737 2.5e-96 357.5 373 62.2
Manes.11G104300 Manihot esculenta HOM05D004779 ORTHO05D005737 8.2e-95 352.4 378 60.6
Gohir.A13G221700 Gossypium hirsutum HOM05D004779 ORTHO05D005737 1.1e-94 352.1 382 59.7
HanXRQChr13g0420201 Helianthus annuus HOM05D004779 ORTHO05D005737 3.1e-94 350.5 383 60.8
Cc01_g08160 Coffea canephora HOM05D004779 ORTHO05D005737 6.9e-94 349.4 379 61.7
Ah.08g222510 Amaranthus hybridus HOM05D004779 ORTHO05D005737 1.2e-93 348.6 374 60.4
Aqoxy1G00564 Aquilegia oxysepala HOM05D004779 ORTHO05D005737 1.5e-93 348.2 375 58.1
Gorai.001G127300 Gossypium raimondii HOM05D004779 ORTHO05D005737 3.4e-93 347.1 376 60.4
Actinidia12899 Actinidia chinensis HOM05D004779 ORTHO05D005737 4.5e-93 346.7 401 56.1
CAN.G439.1 Capsicum annuum HOM05D004779 ORTHO05D005737 4.5e-93 346.7 376 59.6
EL10Ac7g16253 Beta vulgaris HOM05D004779 ORTHO05D005737 7.7e-93 345.9 377 60.5
Peaxi162Scf01091g00011 Petunia axillaris HOM05D004779 ORTHO05D005737 1.0e-92 345.5 375 60.8
THA.LOC104799595 Tarenaya hassleriana HOM05D004779 ORTHO05D005737 1.3e-92 345.1 378 59.8
Psat2g023720 Pisum sativum HOM05D004779 ORTHO05D005737 2.2e-92 344.4 373 59.2
Oeu051492.1 Olea europaea HOM05D004779 ORTHO05D005737 6.5e-92 342.8 376 60.6
Lsat_1_v5_gn_3_114561 Lactuca sativa HOM05D004779 ORTHO05D005737 8.5e-92 342.4 383 58.0
Sabra09G0121800 Salix brachista HOM05D004779 ORTHO05D005737 8.5e-92 342.4 418 56.2
vmacro04059 Vaccinium macrocarpon HOM05D004779 ORTHO05D005737 8.5e-92 342.4 366 59.0
HanXRQChr03g0091061 Helianthus annuus HOM05D004779 ORTHO05D005737 6.1e-90 336.3 373 58.2
Potri.004G193300 Populus trichocarpa HOM05D004779 ORTHO05D005737 7.9e-90 335.9 382 58.1
Gorai.013G256500 Gossypium raimondii HOM05D004779 ORTHO05D005737 4.1e-86 323.6 384 57.0
PGR119G0691 Punica granatum HOM05D004779 ORTHO05D005737 2.6e-85 320.9 380 57.1
Gohir.D13G225700 Gossypium hirsutum HOM05D004779 ORTHO05D005737 1.7e-84 318.2 388 55.9
SalBow6G6366 Salvia bowleyana HOM05D004779 ORTHO05D005737 3.8e-84 317.0 389 54.5
THA.LOC104810971 Tarenaya hassleriana HOM05D004779 ORTHO05D005737 1.5e-83 315.1 380 54.7
AL6G32490 Arabidopsis lyrata HOM05D004779 ORTHO05D005737 1.4e-81 308.5 378 52.6
SGA_v2.0_scaffold7G04016 Striga asiatica HOM05D004779 ORTHO05D005737 5.2e-81 306.6 386 54.7
DCAR_012261 Daucus carota HOM05D004779 ORTHO05D005737 8.8e-81 305.8 372 57.5
Migut.D02461 Erythranthe guttata HOM05D004779 ORTHO05D005737 8.8e-81 305.8 391 54.0
PSO339G0772 Papaver somniferum HOM05D004779 ORTHO05D005737 1.5e-80 305.1 376 54.5
AT5G20930 Arabidopsis thaliana HOM05D004779 ORTHO05D005737 6.3e-79 299.7 379 52.5
Aa31LG1G13840 Aethionema arabicum HOM05D004779 ORTHO05D005737 3.1e-78 297.4 392 51.0
Thhalv10012855m.g Eutrema salsugineum HOM05D004779 ORTHO05D005737 3.1e-78 297.4 379 50.9
Cpa.g.sc103.54 Carica papaya HOM05D004779 ORTHO05D005737 7.0e-78 296.2 397 52.4
CDE05G1310 Ceratophyllum demersum HOM05D004779 ORTHO05D005737 2.7e-77 294.3 375 54.7
CARHR191920 Cardamine hirsuta HOM05D004779 ORTHO05D005737 3.5e-77 293.9 375 50.7
FAN22G0927 Fragaria x ananassa HOM05D004779 ORTHO05D013607 3.5e-77 293.9 171 95.9
ATR0697G120 Amborella trichopoda HOM05D004779 ORTHO05D005737 5.9e-77 293.1 373 50.9
ECA240G3152 Erigeron canadensis HOM05D004779 ORTHO05D005737 2.2e-76 291.2 342 55.6
HPP92_004176 Vanilla planifolia HOM05D004779 ORTHO05D005737 2.9e-76 290.8 370 53.0
Medtr5g087050 Medicago truncatula HOM05D004779 ORTHO05D005737 3.8e-76 290.4 290 59.3
Sp6g23590 Schrenkiella parvula HOM05D004779 ORTHO05D005737 6.5e-76 289.7 378 51.1
Carub.0006s1924 Capsella rubella HOM05D004779 ORTHO05D005737 1.5e-75 288.5 378 51.6
Migut.O00734 Erythranthe guttata HOM05D004779 ORTHO05D005737 8.0e-74 282.7 376 52.7
C02p10520 Brassica napus HOM05D004779 ORTHO05D005737 1.0e-73 282.3 377 50.7
BraA02t05604Z Brassica rapa HOM05D004779 ORTHO05D005737 1.0e-73 282.3 377 50.7
Medtr5g087240 Medicago truncatula HOM05D004779 ORTHO05D005737 6.8e-73 279.6 305 57.0
BcaC04g19491 Brassica carinata HOM05D004779 ORTHO05D005737 1.2e-72 278.9 371 49.6
C09p55170 Brassica napus HOM05D004779 ORTHO05D005737 1.2e-72 278.9 371 49.6
BolC9t58378H Brassica oleracea HOM05D004779 ORTHO05D005737 7.5e-72 276.2 386 49.2
BcaB05g22801 Brassica carinata HOM05D004779 ORTHO05D005737 2.2e-71 274.6 377 49.3
A10p19090 Brassica napus HOM05D004779 ORTHO05D005737 1.4e-70 271.9 370 50.8
PSO384G0479 Papaver somniferum HOM05D004779 ORTHO05D005737 5.4e-70 270.0 374 50.3
BcaB08g37316 Brassica carinata HOM05D004779 ORTHO05D005737 9.1e-70 269.2 379 49.3
MSTRG.18803 Avicennia marina HOM05D004779 ORTHO05D005737 2.0e-69 268.1 388 49.5
BcaC03g13814 Brassica carinata HOM05D004779 ORTHO05D005737 5.9e-69 266.5 375 48.8
BraA10t43988Z Brassica rapa HOM05D004779 ORTHO05D005737 1.0e-68 265.8 385 49.4
BolC2t07083H Brassica oleracea HOM05D004779 ORTHO05D005737 2.2e-68 264.6 376 48.7
BNapus_Darmor_BZH_scaffold_38p01260 Brassica napus HOM05D004779 ORTHO05D005737 8.5e-68 262.7 379 48.8
AUR62001587 Chenopodium quinoa HOM05D004779 ORTHO05D005737 1.9e-67 261.5 377 50.9
FAN02G4109 Fragaria x ananassa HOM05D004779 ORTHO05D005737 8.8e-65 252.7 169 87.6
Zm00001eb214860 Zea mays HOM05D004779 ORTHO05D005737 1.2e-64 252.3 371 46.6
Hund20969 Selenicereus undatus HOM05D004779 ORTHO05D005737 2.2e-63 248.1 377 48.5
QL01p018814 Quercus lobata HOM05D004779 ORTHO05D005737 9.2e-62 242.7 371 47.4
FvH4_1g22680 Fragaria vesca HOM05D011291 ORTHO05D035499 6.6e-60 236.5 175 70.3
Os03g0749800 Oryza sativa ssp. japonica HOM05D004779 ORTHO05D005737 5.2e-57 226.9 371 45.0
FAN17G2063 Fragaria x ananassa HOM05D011291 ORTHO05D035499 6.8e-57 226.5 147 76.2
Zm00001eb057260 Zea mays HOM05D004779 ORTHO05D005737 8.9e-57 226.1 253 54.9
FAN19G3174 Fragaria x ananassa HOM05D011291 ORTHO05D208745 4.4e-56 223.8 179 65.9
SMO340G0087 Selaginella moellendorffii HOM05D004779 ORTHO05D005737 2.1e-50 204.9 372 40.9
CDE01G0346 Ceratophyllum demersum HOM05D004779 ORTHO05D005737 2.6e-48 198.0 167 68.3
FAN13G2999 Fragaria x ananassa HOM05D011291 ORTHO05D035499 5.8e-48 196.8 138 73.2
Mapoly0004s0128 Marchantia polymorpha HOM05D004779 ORTHO05D005737 4.9e-47 193.7 372 39.5
SHI25307 Sapria himalayana HOM05D000105 ORTHO05D005737 1.1e-46 192.6 237 51.9
SMO356G0434 Selaginella moellendorffii HOM05D004779 ORTHO05D005737 4.6e-45 187.2 371 40.7
ECA238G1299 Erigeron canadensis HOM05D004779 ORTHO05D005737 1.2e-37 162.5 201 53.2
MSTRG.20999 Avicennia marina HOM05D004779 ORTHO05D005737 2.1e-37 161.8 126 72.2
Nitab4.5_0008410g0030 Nicotiana tabacum HOM05D004779 ORTHO05D005737 3.3e-35 154.5 180 57.2
Medtr5g086970 Medicago truncatula HOM05D004779 ORTHO05D005737 9.9e-32 142.9 129 62.8
Pp3c24_17430 Physcomitrium patens HOM05D004779 ORTHO05D005737 9.6e-27 126.3 368 31.5
FAN17G2006 Fragaria x ananassa HOM05D011291 ORTHO05D203526 1.2e-26 125.9 61 88.5
MSTRG.21000 Avicennia marina HOM05D004779 ORTHO05D005737 8.1e-26 123.2 209 46.9
CBR_g5694 Chara braunii HOM05D000019 ORTHO05D000353 8.1e-26 123.2 437 30.7
SEGI_33986 Sequoiadendron giganteum HOM05D004779 ORTHO05D005737 9.9e-24 116.3 250 39.2
CDE01G0526 Ceratophyllum demersum HOM05D004779 ORTHO05D005737 9.3e-22 109.8 179 49.2
Medtr5g087250 Medicago truncatula HOM05D004779 ORTHO05D005737 2.7e-21 108.2 189 42.9
FAN20G1597 Fragaria x ananassa HOM05D011291 ORTHO05D205972 3.9e-20 104.4 53 100.0
Oeu026350.1 Olea europaea HOM05D004779 ORTHO05D005737 5.1e-20 104.0 404 33.9
Haze_23617 Corylus avellana HOM05D004779 ORTHO05D005737 1.1e-19 102.8 140 50.0
FAN19G1287 Fragaria x ananassa HOM05D011291 ORTHO05D022554 2.8e-18 98.2 111 53.2
SEGI_33400 Sequoiadendron giganteum HOM05D004779 ORTHO05D005737 1.8e-17 95.5 69 73.9
PGSC0003DMG400002996 Solanum tuberosum HOM05D004779 ORTHO05D005737 7.4e-11 73.6 55 78.2
MBI05_g37654_MAGBIO Magnolia biondii HOM05D004779 ORTHO05D005737 1.3e-10 72.8 161 39.8
FvH4_5g28460 Fragaria vesca HOM05D014050 ORTHO05D045444 6.9e-09 67.0 32 90.6
FvH4_5g28490 Fragaria vesca HOM05D001838 ORTHO05D198378 2.6e-08 65.1 31 90.3
SHI25305 Sapria himalayana HOM05D004779 ORTHO05D005737 4.5e-08 64.3 77 55.8
MCO16G693 Micromonas commoda HOM05D004779 ORTHO05D005737 1.3e-07 62.8 241 26.1
SEGI_05150 Sequoiadendron giganteum HOM05D004779 ORTHO05D005737 2.9e-07 61.6 55 65.5
Nitab4.5_0010066g0010 Nicotiana tabacum HOM05D004779 ORTHO05D005737 1.1e-06 59.7 73 56.2
FAN19G3156 Fragaria x ananassa HOM05D011291 ORTHO05D022554 1.4e-06 59.3 28 96.4


User provided reference genes

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