Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G0773 Fragaria x ananassa HOM05D005392 ORTHO05D006709 9.2e-270 932.9 462 100.0
FvH4_3g29620 Fragaria vesca HOM05D005392 ORTHO05D006709 2.0e-195 686.0 470 77.7
FAN16G3342 Fragaria x ananassa HOM05D005392 ORTHO05D006709 5.0e-191 671.4 476 76.3
RcHm_v2.0_Chr5g0054911 Rosa chinensis HOM05D005392 ORTHO05D006709 8.5e-183 644.0 473 74.4
GSVIVG01036185001 Vitis vinifera HOM05D005392 ORTHO05D006709 1.0e-180 637.1 535 64.5
QL01p013222 Quercus lobata HOM05D005392 ORTHO05D006709 2.8e-178 629.0 529 63.3
ClCG02G022080 Citrullus lanatus HOM05D005392 ORTHO05D006709 2.4e-177 625.9 483 68.9
Prupe.6G124700 Prunus persica HOM05D005392 ORTHO05D006709 4.5e-176 621.7 470 70.9
EL10Ac7g15794 Beta vulgaris HOM05D005392 ORTHO05D006709 1.3e-175 620.2 463 69.3
SalBow6G4405 Salvia bowleyana HOM05D005392 ORTHO05D006709 2.5e-174 615.9 472 67.4
MD11G1162100 Malus domestica HOM05D005392 ORTHO05D006709 8.0e-173 610.9 474 69.0
Sabra09G0112900 Salix brachista HOM05D005392 ORTHO05D006709 1.6e-168 596.7 544 60.5
vmacro03297 Vaccinium macrocarpon HOM05D005392 ORTHO05D006709 1.6e-168 596.7 469 66.7
FAN11G2232 Fragaria x ananassa HOM05D005392 ORTHO05D006709 2.7e-168 595.9 370 84.3
RcHm_v2.0_Chr5g0054671 Rosa chinensis HOM05D005392 ORTHO05D006709 2.9e-167 592.4 367 82.3
AUR62009791 Chenopodium quinoa HOM05D005392 ORTHO05D006709 1.1e-166 590.5 482 65.8
Sabra09G0115300 Salix brachista HOM05D005392 ORTHO05D006709 1.1e-166 590.5 524 61.6
COL.COLO4_19934 Corchorus olitorius HOM05D005392 ORTHO05D006709 3.3e-166 589.0 470 66.4
ECA238G1310 Erigeron canadensis HOM05D000477 ORTHO05D000338 1.4e-164 583.6 451 66.5
Cpa.g.sc32.122 Carica papaya HOM05D005392 ORTHO05D006709 1.8e-161 573.2 463 65.7
CiPaw.13G138700 Carya illinoinensis HOM05D005392 ORTHO05D006709 1.6e-160 570.1 471 65.8
CANSAT11G1964 Cannabis sativa HOM05D005392 ORTHO05D006709 3.3e-158 562.4 448 65.2
Haze_23423 Corylus avellana HOM05D005392 ORTHO05D006709 7.3e-158 561.2 556 56.5
Atru.chr3.3331 Acer truncatum HOM05D005392 ORTHO05D006709 1.2e-157 560.5 466 63.9
TAR369G0360 Trochodendron aralioides HOM05D005392 ORTHO05D006709 6.2e-157 558.1 439 65.8
CSS0010610 Camellia sinensis var. sinensis HOM05D005392 ORTHO05D006709 8.0e-157 557.8 437 66.4
DCAR_006148 Daucus carota HOM05D005392 ORTHO05D006709 8.0e-157 557.8 453 64.5
Glyma.12G183100 Glycine max HOM05D005392 ORTHO05D006709 1.4e-156 557.0 451 65.4
Phvul.005G125766 Phaseolus vulgaris HOM05D005392 ORTHO05D006709 1.4e-156 557.0 465 63.7
VMungo1080G0855 Vigna mungo HOM05D005392 ORTHO05D006709 3.1e-156 555.8 468 63.5
Dinv29445 Davidia involucrata HOM05D005392 ORTHO05D006709 6.8e-156 554.7 436 66.3
Oeu050205.1 Olea europaea HOM05D005392 ORTHO05D006709 1.5e-155 553.5 438 66.0
Gohir.A05G082400 Gossypium hirsutum HOM05D005392 ORTHO05D006709 2.0e-155 553.1 455 64.0
Hma1.2p1_0305F.1_g119470 Hydrangea macrophylla HOM05D005392 ORTHO05D006709 2.6e-155 552.7 474 63.5
CSS0035304 Camellia sinensis var. sinensis HOM05D005392 ORTHO05D006709 3.4e-155 552.4 437 65.9
Glyma.13G318000 Glycine max HOM05D005392 ORTHO05D006709 4.4e-155 552.0 471 62.8
Manes.11G159800 Manihot esculenta HOM05D005392 ORTHO05D006709 1.7e-154 550.1 455 63.5
Ca_01667_v3 Cicer arietinum L. HOM05D005392 ORTHO05D006709 2.2e-154 549.7 464 62.9
Sed0020109 Sechium edule HOM05D005392 ORTHO05D006709 4.9e-154 548.5 459 63.0
TWI75G0596 Tripterygium wilfordii HOM05D005392 ORTHO05D006709 4.9e-154 548.5 470 62.6
Thecc.09G287600 Theobroma cacao HOM05D005392 ORTHO05D006709 6.4e-154 548.1 453 64.0
Lalb_Chr24g0395241 Lupinus albus HOM05D005392 ORTHO05D006709 8.3e-154 547.7 449 62.4
Psat5g256160 Pisum sativum HOM05D005392 ORTHO05D006709 1.1e-153 547.4 458 63.3
Gohir.D05G085300 Gossypium hirsutum HOM05D005392 ORTHO05D006709 2.4e-153 546.2 455 63.5
Gorai.009G087100 Gossypium raimondii HOM05D005392 ORTHO05D006709 3.2e-153 545.8 460 63.5
Potri.009G146000 Populus trichocarpa HOM05D005392 ORTHO05D006709 4.1e-153 545.4 440 64.5
MELO3C021433.2 Cucumis melo HOM05D005392 ORTHO05D006709 9.2e-153 544.3 471 62.6
Sc12g0004320 Simmondsia chinensis HOM05D005392 ORTHO05D006709 1.2e-152 543.9 457 63.2
THA.LOC104826410 Tarenaya hassleriana HOM05D005392 ORTHO05D006709 1.6e-152 543.5 438 64.8
Hund18739 Selenicereus undatus HOM05D005392 ORTHO05D006709 2.0e-152 543.1 459 63.2
PGR119G0315 Punica granatum HOM05D005392 ORTHO05D006709 2.7e-152 542.7 480 61.5
PSO384G3475 Papaver somniferum HOM05D005392 ORTHO05D006709 6.0e-152 541.6 441 63.7
PSO339G4135 Papaver somniferum HOM05D005392 ORTHO05D006709 7.8e-152 541.2 463 61.1
HanXRQChr14g0451701 Helianthus annuus HOM05D005392 ORTHO05D006709 1.0e-151 540.8 466 62.0
BcaC02g10896 Brassica carinata HOM05D005392 ORTHO05D006709 1.7e-151 540.0 441 63.7
arahy.Tifrunner.gnm1.ann1.J9251A Arachis hypogaea HOM05D005392 ORTHO05D006709 2.3e-151 539.7 441 63.5
Carub.0004s0839 Capsella rubella HOM05D005392 ORTHO05D006709 2.3e-151 539.7 436 63.1
AL4G22670 Arabidopsis lyrata HOM05D005392 ORTHO05D006709 5.0e-151 538.5 441 63.3
A07p18330 Brassica napus HOM05D005392 ORTHO05D006709 6.6e-151 538.1 441 63.5
BolC4t23888H Brassica oleracea HOM05D005392 ORTHO05D006709 6.6e-151 538.1 440 63.4
C04p23950 Brassica napus HOM05D005392 ORTHO05D006709 8.6e-151 537.7 440 63.4
BcaB02g10107 Brassica carinata HOM05D005392 ORTHO05D006709 1.9e-150 536.6 441 63.3
Thhalv10016780m.g Eutrema salsugineum HOM05D005392 ORTHO05D006709 2.5e-150 536.2 441 63.0
BraA07t29549Z Brassica rapa HOM05D005392 ORTHO05D006709 3.3e-150 535.8 441 63.3
Nn6g34991 Nelumbo nucifera HOM05D005392 ORTHO05D006709 5.6e-150 535.0 468 61.8
TPR.G23777 Trifolium pratense HOM05D005392 ORTHO05D006709 5.6e-150 535.0 446 62.1
Sp4g10460 Schrenkiella parvula HOM05D005392 ORTHO05D006709 2.8e-149 532.7 441 62.8
CsaV3_6G014910 Cucumis sativus L. HOM05D005392 ORTHO05D006709 3.6e-149 532.3 464 61.0
Actinidia07231 Actinidia chinensis HOM05D005392 ORTHO05D006709 4.7e-149 531.9 465 61.7
CDE02G1304 Ceratophyllum demersum HOM05D005392 ORTHO05D006709 4.7e-149 531.9 454 61.7
Solyc11g067160.2 Solanum lycopersicum HOM05D005392 ORTHO05D006709 6.2e-149 531.6 432 63.7
AL4G22650 Arabidopsis lyrata HOM05D005392 ORTHO05D006709 8.1e-149 531.2 449 62.6
AT2G27680 Arabidopsis thaliana HOM05D005392 ORTHO05D006709 8.1e-149 531.2 457 61.3
Sopen11g026840 Solanum pennellii HOM05D005392 ORTHO05D006709 8.1e-149 531.2 432 63.7
PGSC0003DMG400007408 Solanum tuberosum HOM05D005392 ORTHO05D006709 1.4e-148 530.4 435 63.2
Eucgr.J00468 Eucalyptus grandis HOM05D005392 ORTHO05D006709 3.1e-148 529.3 481 59.7
CARHR120330 Cardamine hirsuta HOM05D005392 ORTHO05D006709 5.2e-148 528.5 448 62.1
unitig_899.g14958 Utricularia gibba HOM05D005392 ORTHO05D006709 6.8e-148 528.1 437 64.3
Lj3g0002711 Lotus japonicus HOM05D005392 ORTHO05D006709 1.2e-147 527.3 390 68.7
Aa31LG5G8280 Aethionema arabicum HOM05D005392 ORTHO05D006709 2.6e-147 526.2 447 61.7
Rhsim05G0032600 Rhododendron simsii HOM05D005392 ORTHO05D006709 3.4e-147 525.8 378 71.7
Carub.0004s0841 Capsella rubella HOM05D005392 ORTHO05D006709 1.3e-146 523.9 433 62.8
CAN.G644.5 Capsicum annuum HOM05D005392 ORTHO05D006709 6.4e-146 521.5 423 63.4
Lalb_Chr14g0374111 Lupinus albus HOM05D005392 ORTHO05D006709 6.4e-146 521.5 428 62.6
Aqoxy4G02830 Aquilegia oxysepala HOM05D005392 ORTHO05D006709 2.4e-145 519.6 440 61.8
Lj2A987T33 Lonicera japonica HOM05D005392 ORTHO05D006709 7.1e-145 518.1 386 69.2
ATR0820G262 Amborella trichopoda HOM05D005392 ORTHO05D006709 9.2e-145 517.7 443 60.9
Medtr2g085125 Medicago truncatula HOM05D005392 ORTHO05D006709 1.2e-144 517.3 466 59.4
Os09g0567366 Oryza sativa ssp. japonica HOM05D005392 ORTHO05D006709 1.2e-144 517.3 428 61.9
CDE04G0325 Ceratophyllum demersum HOM05D005392 ORTHO05D006709 1.6e-144 516.9 416 64.7
Lsat_1_v5_gn_2_95901 Lactuca sativa HOM05D005392 ORTHO05D006709 2.1e-144 516.5 412 65.0
Psat5g256000 Pisum sativum HOM05D005392 ORTHO05D006709 2.7e-144 516.2 448 60.5
SGA_v2.0_scaffold147G36361 Striga asiatica HOM05D005392 ORTHO05D006709 7.8e-144 514.6 438 61.4
HPP92_003276 Vanilla planifolia HOM05D005392 ORTHO05D006709 2.3e-143 513.1 459 59.0
Duzib150G1562 Durio zibethinus HOM05D005392 ORTHO05D006709 1.9e-142 510.0 459 61.0
arahy.Tifrunner.gnm1.ann1.XC3EXN Arachis hypogaea HOM05D005392 ORTHO05D006709 1.3e-138 497.3 401 63.6
AUR62039238 Chenopodium quinoa HOM05D005392 ORTHO05D006709 2.4e-137 493.0 406 64.0
Ah.08g215920 Amaranthus hybridus HOM05D005392 ORTHO05D006709 1.6e-136 490.3 463 58.5
Dinv05174 Davidia involucrata HOM05D005392 ORTHO05D006709 1.0e-135 487.6 286 82.9
SEGI_32260 Sequoiadendron giganteum HOM05D005392 ORTHO05D006709 1.7e-135 486.9 417 60.4
Zm00001eb096060 Zea mays HOM05D005392 ORTHO05D006709 5.1e-135 485.3 442 58.1
Cc01_g09510 Coffea canephora HOM05D005392 ORTHO05D006709 4.4e-131 472.2 282 80.9
CARHR120370 Cardamine hirsuta HOM05D005392 ORTHO05D006709 3.2e-129 466.1 425 58.1
Pp3c8_9920 Physcomitrium patens HOM05D005392 ORTHO05D006709 1.2e-128 464.2 459 54.0
AagrBONN_evm.TU.Sc2ySwM_362.213 Anthoceros agrestis HOM05D005392 ORTHO05D006709 5.1e-127 458.8 422 56.4
Ciclev10028566m.g Citrus clementina HOM05D005392 ORTHO05D006709 1.1e-126 457.6 484 56.0
CARHR120340 Cardamine hirsuta HOM05D005392 ORTHO05D006709 1.9e-126 456.8 457 55.1
Mapoly0068s0097 Marchantia polymorpha HOM05D005392 ORTHO05D006709 2.8e-125 453.0 451 53.9
Peaxi162Scf00544g00917 Petunia axillaris HOM05D005392 ORTHO05D006709 1.5e-123 447.2 442 55.9
SMO116G0019 Selaginella moellendorffii HOM05D005392 ORTHO05D006709 9.3e-121 438.0 446 52.0
Mapoly0074s0037 Marchantia polymorpha HOM05D005392 ORTHO05D006709 1.5e-118 430.6 478 50.0
CBR_g10840 Chara braunii HOM05D005392 ORTHO05D006709 1.5e-107 394.0 423 48.9
arahy.Tifrunner.gnm1.ann1.32614Y Arachis hypogaea HOM05D005392 ORTHO05D006709 4.5e-99 365.9 302 63.9
Actinidia24196 Actinidia chinensis HOM05D005392 ORTHO05D006709 5.9e-91 339.0 337 56.1
Rhsim05G0023600 Rhododendron simsii HOM05D005392 ORTHO05D006709 2.0e-86 323.9 304 60.2
Hma1.2p1_0305F.1_g119500 Hydrangea macrophylla HOM05D005392 ORTHO05D006709 4.1e-84 316.2 215 76.3
GSVIVG01034253001 Vitis vinifera HOM05D005392 ORTHO05D006709 1.2e-75 288.1 210 70.5
Migut.D02344 Erythranthe guttata HOM05D005392 ORTHO05D006709 9.4e-73 278.5 277 55.2
CBR_g23540 Chara braunii HOM05D005392 ORTHO05D006709 4.4e-70 269.6 417 40.3
MBI17_g16880_MAGBIO Magnolia biondii HOM05D005392 ORTHO05D006709 2.7e-64 250.4 140 85.7
Thhalv10017835m.g Eutrema salsugineum HOM05D005392 ORTHO05D006709 1.2e-62 245.0 283 49.1
MD03G1139700 Malus domestica HOM05D005392 ORTHO05D006709 6.5e-58 229.2 407 42.0
Hund20869 Selenicereus undatus HOM05D005392 ORTHO05D006709 2.1e-56 224.2 132 81.8
Pp3c10_3150 Physcomitrium patens HOM05D005392 ORTHO05D006709 3.8e-50 203.4 252 45.2
RcHm_v2.0_Chr5g0054781 Rosa chinensis HOM05D005392 ORTHO05D006709 4.7e-48 196.4 100 97.0
Cre16.g684750 Chlamydomonas reinhardtii HOM05D005392 ORTHO05D006709 2.5e-41 174.1 332 33.7
RcHm_v2.0_Chr5g0054681 Rosa chinensis HOM05D005392 ORTHO05D006709 3.1e-39 167.2 114 83.3
ATR0820G214 Amborella trichopoda HOM05D005392 ORTHO05D006709 7.8e-35 152.5 100 73.0
Pp3c3_32330 Physcomitrium patens HOM05D005392 ORTHO05D006709 2.5e-33 147.5 455 26.4
Cre12.g518900 Chlamydomonas reinhardtii HOM05D005392 ORTHO05D006709 9.5e-33 145.6 344 33.4
FAN25G3482 Fragaria x ananassa HOM05D005392 ORTHO05D006709 1.8e-31 141.4 104 74.0
MCO12G490 Micromonas commoda HOM05D005392 ORTHO05D006709 3.4e-30 137.1 231 35.9
MBI17_g06166_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 1.9e-25 121.3 214 39.7
MBI01_g15449_MAGBIO Magnolia biondii HOM05D005392 ORTHO05D006709 6.2e-24 116.3 106 60.4
Lj2C987T5 Lonicera japonica HOM05D005392 ORTHO05D006709 6.8e-23 112.8 85 68.2
Medtr2g085135 Medicago truncatula HOM05D005392 ORTHO05D006709 9.9e-22 109.0 110 56.4
PRCOL_00006822 Prasinoderma coloniale HOM05D005392 ORTHO05D006709 1.7e-21 108.2 263 28.9
Cre02.g095127 Chlamydomonas reinhardtii HOM05D005392 ORTHO05D006709 3.2e-20 104.0 342 26.9
MELO3C014407.2 Cucumis melo HOM05D005392 ORTHO05D006709 2.3e-18 97.8 82 59.8
MELO3C008584.2 Cucumis melo HOM05D005392 ORTHO05D006709 5.6e-17 93.2 104 52.9
Cre12.g544000 Chlamydomonas reinhardtii HOM05D005392 ORTHO05D145719 9.3e-12 75.9 178 30.3
EL10Ac9g22870 Beta vulgaris HOM05D002607 ORTHO05D006782 1.6e-11 75.1 271 25.5
Peaxi162Scf00351g01011 Petunia axillaris HOM05D002607 ORTHO05D006782 1.0e-10 72.4 323 24.1
Lj2A594T20 Lonicera japonica HOM05D002607 ORTHO05D006782 2.5e-09 67.8 235 26.4
Duzib068G0681 Durio zibethinus HOM05D002607 ORTHO05D008816 2.8e-08 64.3 229 24.9
FAN10G2280 Fragaria x ananassa HOM05D002607 ORTHO05D008816 4.8e-08 63.5 230 23.9
COL.COLO4_14342 Corchorus olitorius HOM05D002607 ORTHO05D008816 8.1e-08 62.8 228 25.4
RcHm_v2.0_Chr1g0382411 Rosa chinensis HOM05D002607 ORTHO05D008816 8.1e-08 62.8 230 24.8
THA.LOC104799949 Tarenaya hassleriana HOM05D002607 ORTHO05D008816 8.1e-08 62.8 270 24.4
PGR042G3609 Punica granatum HOM05D002607 ORTHO05D008816 1.1e-07 62.4 273 22.0
CSS0016040 Camellia sinensis var. sinensis HOM05D002607 ORTHO05D008816 1.4e-07 62.0 228 24.6
FvH4_7g32560 Fragaria vesca HOM05D002607 ORTHO05D008816 1.8e-07 61.6 230 24.8
FAN01G2932 Fragaria x ananassa HOM05D002607 ORTHO05D008816 1.8e-07 61.6 230 24.8
FAN03G3022 Fragaria x ananassa HOM05D002607 ORTHO05D008816 1.8e-07 61.6 230 24.8
Lsat_1_v5_gn_2_135080 Lactuca sativa HOM05D002607 ORTHO05D008816 3.1e-07 60.8 228 25.0
FAN10G4015 Fragaria x ananassa HOM05D002607 ORTHO05D008816 4.0e-07 60.5 225 24.4
Aa31LG3G9760 Aethionema arabicum HOM05D002607 ORTHO05D008816 5.3e-07 60.1 228 23.7
Thecc.03G205900 Theobroma cacao HOM05D002607 ORTHO05D008816 5.3e-07 60.1 230 24.3
CDE04G1541 Ceratophyllum demersum HOM05D002607 ORTHO05D008816 6.9e-07 59.7 228 25.9
CBR_g19442 Chara braunii HOM05D002607 ORTHO05D006782 1.2e-06 58.9 205 25.9
MD07G1296900 Malus domestica HOM05D002607 ORTHO05D008816 1.2e-06 58.9 231 24.2
Prupe.2G316500 Prunus persica HOM05D002607 ORTHO05D008816 1.2e-06 58.9 228 24.1
Thhalv10013893m.g Eutrema salsugineum HOM05D002607 ORTHO05D008816 1.5e-06 58.5 271 24.0
Nitab4.5_0000319g0330 Nicotiana tabacum HOM05D002607 ORTHO05D008816 1.5e-06 58.5 230 23.0
Os10g0517400 Oryza sativa ssp. japonica HOM05D002607 ORTHO05D008816 1.5e-06 58.5 269 22.7
Nn3g18811 Nelumbo nucifera HOM05D002607 ORTHO05D008816 2.0e-06 58.2 228 23.2
unitig_747.g21741 Utricularia gibba HOM05D002607 ORTHO05D008816 2.0e-06 58.2 268 22.8
Nitab4.5_0007028g0040 Nicotiana tabacum HOM05D002607 ORTHO05D008816 2.6e-06 57.8 230 23.0
vmacro10150 Vaccinium macrocarpon HOM05D002607 ORTHO05D008816 3.4e-06 57.4 232 25.0
AagrBONN_evm.TU.Sc2ySwM_228.2036 Anthoceros agrestis HOM05D002607 ORTHO05D006782 4.5e-06 57.0 205 24.4
Sp6g15720 Schrenkiella parvula HOM05D002607 ORTHO05D008816 4.5e-06 57.0 268 22.8
Rhsim09G0208800 Rhododendron simsii HOM05D002607 ORTHO05D008816 5.8e-06 56.6 228 21.9
Cre10.g461900 Chlamydomonas reinhardtii HOM05D002663 ORTHO05D002988 7.6e-06 56.2 284 22.9
PSO782G5500 Papaver somniferum HOM05D002607 ORTHO05D008816 7.6e-06 56.2 220 22.7
Thecc.05G285700 Theobroma cacao HOM05D000352 ORTHO05D000260 9.9e-06 55.8 323 22.3


User provided reference genes

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