Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G0664 Fragaria x ananassa HOM05D004937 ORTHO05D006414 7.8e-286 986.5 513 100.0
FvH4_3g01860 Fragaria vesca HOM05D004937 ORTHO05D006414 6.6e-277 956.8 514 97.3
RcHm_v2.0_Chr5g0002731 Rosa chinensis HOM05D004937 ORTHO05D006414 4.3e-228 794.7 522 83.7
MD10G1323300 Malus domestica HOM05D004937 ORTHO05D006414 7.3e-167 591.3 527 64.1
Prupe.4G019000 Prunus persica HOM05D004937 ORTHO05D006414 7.5e-164 581.3 520 66.9
CANSAT56G3877 Cannabis sativa HOM05D004937 ORTHO05D006414 1.3e-144 517.3 481 59.7
Sabra04G0005400 Salix brachista HOM05D004937 ORTHO05D006414 1.5e-143 513.8 505 60.2
TWI63G0901 Tripterygium wilfordii HOM05D004937 ORTHO05D006414 1.3e-142 510.8 479 58.7
Haze_06813 Corylus avellana HOM05D004937 ORTHO05D006414 3.6e-142 509.2 474 59.5
Lj1A1232T94 Lonicera japonica HOM05D004937 ORTHO05D006414 6.2e-142 508.4 497 57.1
GSVIVG01012711001 Vitis vinifera HOM05D004937 ORTHO05D000904 1.1e-141 507.7 511 56.0
CiPaw.09G093200 Carya illinoinensis HOM05D004937 ORTHO05D006414 5.3e-141 505.4 473 58.4
CSS0033735 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 6.9e-141 505.0 479 56.8
Potri.004G010400 Populus trichocarpa HOM05D004937 ORTHO05D006414 1.2e-140 504.2 516 58.7
Manes.16G005800 Manihot esculenta HOM05D004937 ORTHO05D006414 2.0e-140 503.4 484 58.5
QL05p072835 Quercus lobata HOM05D004937 ORTHO05D006414 4.4e-140 502.3 476 58.4
vmacro15793 Vaccinium macrocarpon HOM05D004937 ORTHO05D006414 5.8e-140 501.9 496 57.1
Rhsim02G0106300 Rhododendron simsii HOM05D004937 ORTHO05D006414 2.2e-139 500.0 499 56.7
COL.COLO4_31792 Corchorus olitorius HOM05D004937 ORTHO05D006414 1.4e-138 497.3 472 58.5
Nn1g07169 Nelumbo nucifera HOM05D004937 ORTHO05D006414 5.1e-136 488.8 493 56.4
Cpa.g.sc152.26 Carica papaya HOM05D004937 ORTHO05D006414 6.6e-136 488.4 483 55.9
Thecc.06G222700 Theobroma cacao HOM05D004937 ORTHO05D006414 5.6e-135 485.3 514 54.9
Eucgr.D01342 Eucalyptus grandis HOM05D004937 ORTHO05D006414 1.1e-133 481.1 477 55.8
Ciclev10014440m.g Citrus clementina HOM05D004937 ORTHO05D006414 1.4e-133 480.7 473 55.8
Cc09_g01540 Coffea canephora HOM05D004937 ORTHO05D000904 1.8e-133 480.3 510 51.8
PGR042G1615 Punica granatum HOM05D004937 ORTHO05D006414 2.0e-132 476.9 470 56.8
Nitab4.5_0011734g0010 Nicotiana tabacum HOM05D004937 ORTHO05D006414 5.8e-132 475.3 486 55.6
Peaxi162Scf00394g00019 Petunia axillaris HOM05D004937 ORTHO05D006414 5.8e-132 475.3 470 55.5
Phvul.003G080000 Phaseolus vulgaris HOM05D004937 ORTHO05D006414 1.4e-130 470.7 504 54.6
Nitab4.5_0000005g0300 Nicotiana tabacum HOM05D004937 ORTHO05D006414 5.5e-130 468.8 510 53.1
DCAR_024931 Daucus carota HOM05D004937 ORTHO05D006414 9.3e-130 468.0 467 54.6
Peaxi162Scf00307g01425 Petunia axillaris HOM05D004937 ORTHO05D006414 4.6e-129 465.7 470 54.7
PGSC0003DMG400019871 Solanum tuberosum HOM05D004937 ORTHO05D006414 6.0e-129 465.3 487 54.6
arahy.Tifrunner.gnm1.ann1.L1792D Arachis hypogaea HOM05D004937 ORTHO05D006414 7.9e-129 464.9 525 52.4
Gohir.D06G214000 Gossypium hirsutum HOM05D004937 ORTHO05D006414 1.8e-128 463.8 481 54.7
Gorai.010G252100 Gossypium raimondii HOM05D004937 ORTHO05D006414 2.3e-128 463.4 511 52.6
TAR624G0274 Trochodendron aralioides HOM05D004937 ORTHO05D006414 2.3e-128 463.4 477 54.3
Gohir.A06G207300 Gossypium hirsutum HOM05D004937 ORTHO05D006414 5.1e-128 462.2 484 54.1
Lalb_Chr12g0196051 Lupinus albus HOM05D004937 ORTHO05D006414 5.1e-128 462.2 511 52.3
Glyma.07G261700 Glycine max HOM05D004937 ORTHO05D006414 6.7e-128 461.8 493 53.3
Sc24g0000210 Simmondsia chinensis HOM05D004937 ORTHO05D006414 8.7e-128 461.5 511 49.7
MELO3C002448.2 Cucumis melo HOM05D004937 ORTHO05D006414 1.1e-127 461.1 477 54.3
Solyc02g032870.4 Solanum lycopersicum HOM05D004937 ORTHO05D006414 9.6e-127 458.0 497 54.1
Migut.M01330 Erythranthe guttata HOM05D004937 ORTHO05D000904 1.6e-126 457.2 510 52.5
arahy.Tifrunner.gnm1.ann1.VWCB5J Arachis hypogaea HOM05D004937 ORTHO05D006414 2.1e-126 456.8 502 53.0
VMungo1215G2760 Vigna mungo HOM05D004937 ORTHO05D006414 3.7e-126 456.1 466 54.9
Aqoxy1G02086 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 6.2e-126 455.3 519 54.3
Sopen02g011270 Solanum pennellii HOM05D004937 ORTHO05D006414 1.1e-125 454.5 482 54.1
PSO675G7903 Papaver somniferum HOM05D004937 ORTHO05D006414 1.4e-125 454.1 489 54.2
CsaV3_1G010670 Cucumis sativus L. HOM05D004937 ORTHO05D006414 4.0e-125 452.6 476 54.0
Hund23457 Selenicereus undatus HOM05D004937 ORTHO05D006414 4.0e-125 452.6 550 48.7
MSTRG.15996 Avicennia marina HOM05D004937 ORTHO05D006414 2.6e-124 449.9 519 49.9
PSO541G5924 Papaver somniferum HOM05D004937 ORTHO05D006414 2.6e-124 449.9 489 52.6
EL10Ac8g20076 Beta vulgaris HOM05D004937 ORTHO05D006414 7.6e-124 448.4 564 48.4
Medtr4g132300 Medicago truncatula HOM05D004937 ORTHO05D006414 1.3e-123 447.6 477 56.2
AT1G11800 Arabidopsis thaliana HOM05D004937 ORTHO05D006414 1.7e-123 447.2 481 52.4
PSO541G2704 Papaver somniferum HOM05D004937 ORTHO05D006414 2.2e-123 446.8 489 53.4
HanXRQChr15g0470651 Helianthus annuus HOM05D004937 ORTHO05D006414 4.9e-123 445.7 500 53.0
Glyma.17G012400 Glycine max HOM05D004937 ORTHO05D006414 6.5e-123 445.3 474 53.0
PSO675G1521 Papaver somniferum HOM05D004937 ORTHO05D006414 8.4e-123 444.9 489 51.9
Lj4g0022599 Lotus japonicus HOM05D004937 ORTHO05D006414 1.4e-122 444.1 497 50.3
Lsat_1_v5_gn_7_16360 Lactuca sativa HOM05D004937 ORTHO05D006414 2.5e-122 443.4 511 50.9
Sed0026378 Sechium edule HOM05D004937 ORTHO05D006414 4.2e-122 442.6 472 54.4
DCAR_028195 Daucus carota HOM05D004937 ORTHO05D006414 1.2e-121 441.0 475 56.6
AL1G22990 Arabidopsis lyrata HOM05D004937 ORTHO05D006414 1.6e-121 440.7 479 52.4
Thhalv10006713m.g Eutrema salsugineum HOM05D004937 ORTHO05D000904 4.6e-121 439.1 478 52.9
Carub.0001s1147 Capsella rubella HOM05D004937 ORTHO05D006414 1.1e-119 434.5 480 51.5
BraA09t41776Z Brassica rapa HOM05D004937 ORTHO05D006414 1.9e-119 433.7 479 51.6
CARHR012140 Cardamine hirsuta HOM05D004937 ORTHO05D006414 4.3e-119 432.6 485 51.8
BcaB08g37429 Brassica carinata HOM05D004937 ORTHO05D006414 7.4e-119 431.8 479 50.9
Aa31LG1G2970 Aethionema arabicum HOM05D004937 ORTHO05D006414 1.6e-118 430.6 477 51.4
C08p47960 Brassica napus HOM05D004937 ORTHO05D006414 1.6e-118 430.6 477 50.9
BcaC07g41758 Brassica carinata HOM05D004937 ORTHO05D006414 6.3e-118 428.7 475 51.2
BolC8t52333H Brassica oleracea HOM05D004937 ORTHO05D006414 1.1e-117 427.9 477 50.5
Sp1g10430 Schrenkiella parvula HOM05D004937 ORTHO05D006414 1.4e-117 427.6 477 51.8
Hma1.2p1_3370F.1_g335650 Hydrangea macrophylla HOM05D004937 ORTHO05D006414 2.4e-117 426.8 479 51.6
ECA236G0630 Erigeron canadensis HOM05D004937 ORTHO05D006414 1.2e-116 424.5 479 50.7
AUR62021933 Chenopodium quinoa HOM05D004937 ORTHO05D006414 1.5e-116 424.1 533 47.7
SalBow8G2768 Salvia bowleyana HOM05D004937 ORTHO05D006414 1.5e-116 424.1 488 50.2
A09p64340 Brassica napus HOM05D004937 ORTHO05D007797 1.3e-115 421.0 474 51.1
THA.LOC104809500 Tarenaya hassleriana HOM05D004937 ORTHO05D006414 2.9e-115 419.9 507 46.7
Psat4g006200 Pisum sativum HOM05D004937 ORTHO05D006414 7.2e-114 415.2 278 69.4
HPP92_001597 Vanilla planifolia HOM05D004937 ORTHO05D006414 1.6e-113 414.1 483 49.1
HPP92_001591 Vanilla planifolia HOM05D004937 ORTHO05D006414 1.0e-112 411.4 483 48.7
TPR.G22185 Trifolium pratense HOM05D004937 ORTHO05D006414 1.3e-112 411.0 277 69.7
unitig_748.g7590 Utricularia gibba HOM05D004937 ORTHO05D006414 1.5e-111 407.5 512 44.7
Ah.14g087960 Amaranthus hybridus HOM05D004937 ORTHO05D006414 5.9e-108 395.6 570 44.9
ATR0794G089 Amborella trichopoda HOM05D004937 ORTHO05D006414 7.2e-106 388.7 269 64.3
PSO017G1772 Papaver somniferum HOM05D004937 ORTHO05D006414 7.2e-106 388.7 276 66.3
SEGI_33731 Sequoiadendron giganteum HOM05D004937 ORTHO05D006414 7.9e-105 385.2 279 64.5
AUR62012723 Chenopodium quinoa HOM05D004937 ORTHO05D006414 3.0e-104 383.3 266 66.5
HanXRQChr05g0129391 Helianthus annuus HOM05D004937 ORTHO05D006414 3.9e-104 382.9 280 65.4
Os12g0414900 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 6.7e-104 382.1 267 64.4
Zm00001eb043220 Zea mays HOM05D004937 ORTHO05D006414 2.2e-102 377.1 265 64.2
QL05p072858 Quercus lobata HOM05D004937 ORTHO05D006414 6.3e-102 375.6 281 64.1
Haze_06812 Corylus avellana HOM05D004937 ORTHO05D006414 4.1e-101 372.9 265 66.4
Ca_21076_v3 Cicer arietinum L. HOM05D004937 ORTHO05D006414 2.6e-100 370.2 264 64.8
FAN25G1168 Fragaria x ananassa HOM05D004937 ORTHO05D006414 5.9e-100 369.0 198 92.9
Mapoly0028s0073 Marchantia polymorpha HOM05D004937 ORTHO05D006414 7.2e-98 362.1 489 43.4
Potri.004G010900 Populus trichocarpa HOM05D004937 ORTHO05D006414 2.1e-97 360.5 269 64.3
CDE02G2441 Ceratophyllum demersum HOM05D004937 ORTHO05D006414 3.6e-97 359.8 469 46.1
QL05p072840 Quercus lobata HOM05D004937 ORTHO05D006414 1.0e-96 358.2 270 63.3
Dinv13907 Davidia involucrata HOM05D004937 ORTHO05D006414 1.3e-94 351.3 266 60.9
Pp3c20_16850 Physcomitrium patens HOM05D004937 ORTHO05D006414 6.3e-94 349.0 266 60.5
SHI02217 Sapria himalayana HOM05D004937 ORTHO05D006414 6.3e-94 349.0 531 42.9
Dinv20060 Davidia involucrata HOM05D004937 ORTHO05D006414 1.1e-93 348.2 285 59.6
Sed0013617 Sechium edule HOM05D004937 ORTHO05D006414 4.2e-90 336.3 229 70.3
SMO361G0593 Selaginella moellendorffii HOM05D004937 ORTHO05D006414 2.2e-86 323.9 263 59.3
Migut.M01331 Erythranthe guttata HOM05D004937 ORTHO05D006414 1.6e-84 317.8 268 59.0
AagrBONN_evm.TU.Sc2ySwM_368.2060 Anthoceros agrestis HOM05D004937 ORTHO05D006414 6.5e-83 312.4 247 60.7
CBR_g38366 Chara braunii HOM05D004937 ORTHO05D006414 1.9e-82 310.8 294 50.7
ClCG03G004640 Citrullus lanatus HOM05D004937 ORTHO05D006414 8.8e-80 302.0 193 73.6
HPP92_014181 Vanilla planifolia HOM05D004937 ORTHO05D006414 7.0e-77 292.4 268 54.9
CSS0005056 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 8.5e-75 285.4 177 73.4
Aqoxy3G03726 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 3.6e-73 280.0 277 52.7
Zm00001eb048580 Zea mays HOM05D004937 ORTHO05D006414 8.3e-70 268.9 191 64.4
Aqoxy4G00762 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 1.8e-69 267.7 272 52.2
CSS0029720 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 2.5e-58 230.7 270 47.4
Aqoxy5G03390 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 1.2e-57 228.4 229 51.5
BcaB08g37427 Brassica carinata HOM05D004937 ORTHO05D006414 6.4e-54 216.1 174 58.0
Dinv13906 Davidia involucrata HOM05D004937 ORTHO05D006414 1.4e-53 214.9 270 43.7
CSS0048087 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 7.8e-52 209.1 270 44.1
QL05p072848 Quercus lobata HOM05D004937 ORTHO05D006414 4.7e-49 199.9 136 66.9
BcaB08g37425 Brassica carinata HOM05D004937 ORTHO05D006414 1.7e-46 191.4 133 64.7
Dinv13904 Davidia involucrata HOM05D004937 ORTHO05D006414 9.2e-45 185.7 267 46.1
Cre06.g305050 Chlamydomonas reinhardtii HOM05D004937 ORTHO05D006414 7.8e-44 182.6 289 37.7
Mapoly0074s0008 Marchantia polymorpha HOM05D004937 ORTHO05D006414 1.1e-42 178.7 253 42.3
ClCG03G004650 Citrullus lanatus HOM05D000020 ORTHO05D000904 7.3e-42 176.0 289 43.3
PRCOL_00004553 Prasinoderma coloniale HOM05D004937 ORTHO05D006414 2.8e-41 174.1 308 36.0
Psat6g178560 Pisum sativum HOM05D004937 ORTHO05D006414 2.3e-40 171.0 136 60.3
Dinv13905 Davidia involucrata HOM05D004937 ORTHO05D006414 1.3e-38 165.2 99 75.8
MCO11G820 Micromonas commoda HOM05D004937 ORTHO05D006414 3.2e-37 160.6 294 36.1
BcaB08g37428 Brassica carinata HOM05D004937 ORTHO05D006414 5.1e-35 153.3 272 41.5
Aqoxy3G02634 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 8.9e-32 142.5 162 48.1
Lj2C267G4 Lonicera japonica HOM05D004937 ORTHO05D006414 4.2e-29 133.7 98 63.3
Cre06.g305250 Chlamydomonas reinhardtii HOM05D004937 ORTHO05D006414 2.1e-28 131.3 284 31.3
PRCOL_00006577 Prasinoderma coloniale HOM05D004937 ORTHO05D006414 5.1e-27 126.7 296 31.1
PGSC0003DMG400026496 Solanum tuberosum HOM05D004937 ORTHO05D006414 8.7e-27 125.9 78 73.1
AagrBONN_evm.TU.Sc2ySwM_368.2061 Anthoceros agrestis HOM05D004937 ORTHO05D006414 3.1e-24 117.5 119 50.4
SGA_v2.0_scaffold4G01909 Striga asiatica HOM05D004937 ORTHO05D006414 7.9e-20 102.8 282 35.5
TPR.G37060 Trifolium pratense HOM05D004937 ORTHO05D006414 1.7e-14 85.1 147 42.9
Atru.chr10.2244 Acer truncatum HOM05D004937 ORTHO05D006414 7.1e-13 79.7 138 52.2
Os10g0401100 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 1.2e-12 79.0 59 52.5
Dinv30719 Davidia involucrata HOM05D004937 ORTHO05D006414 1.6e-12 78.6 86 44.2
PSO832G4260 Papaver somniferum HOM05D004937 ORTHO05D002819 6.2e-09 66.6 67 49.3
Os07g0510800 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 4.0e-08 63.9 65 49.2
Os07g0510300 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 9.0e-08 62.8 104 33.7
CSS0014831 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 4.9e-06 57.0 37 59.5


User provided reference genes

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