Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G0540 Fragaria x ananassa HOM05D003667 ORTHO05D004397 1.5e-119 433.0 226 100.0
FAN25G1089 Fragaria x ananassa HOM05D003667 ORTHO05D004397 1.5e-116 422.9 226 98.2
FvH4_3g25040 Fragaria vesca HOM05D003667 ORTHO05D004397 2.8e-115 418.7 224 97.8
FAN11G0144 Fragaria x ananassa HOM05D003667 ORTHO05D004397 6.3e-115 417.5 224 97.3
RcHm_v2.0_Chr5g0045181 Rosa chinensis HOM05D003667 ORTHO05D004397 1.9e-111 406.0 226 95.1
CANSAT78G1932 Cannabis sativa HOM05D003667 ORTHO05D004397 1.1e-93 347.1 234 77.8
CsaV3_4G012110 Cucumis sativus L. HOM05D003667 ORTHO05D004397 8.9e-93 344.0 227 77.5
Gohir.A11G231200 Gossypium hirsutum HOM05D003667 ORTHO05D004397 5.8e-92 341.3 221 78.3
Ciclev10022078m.g Citrus clementina HOM05D003667 ORTHO05D004397 7.6e-92 340.9 229 77.3
Gorai.007G256800 Gossypium raimondii HOM05D003667 ORTHO05D004397 7.6e-92 340.9 221 78.3
Thecc.05G244000 Theobroma cacao HOM05D003667 ORTHO05D004397 7.6e-92 340.9 230 75.2
Gohir.D11G242600 Gossypium hirsutum HOM05D003667 ORTHO05D004397 9.9e-92 340.5 221 77.8
Duzib106G0749 Durio zibethinus HOM05D003667 ORTHO05D004397 1.3e-91 340.1 230 76.1
ClCG04G005470 Citrullus lanatus HOM05D003667 ORTHO05D004397 1.7e-91 339.7 228 76.3
MELO3C008823.2 Cucumis melo HOM05D003667 ORTHO05D004397 3.7e-91 338.6 227 76.2
COL.COLO4_28620 Corchorus olitorius HOM05D003667 ORTHO05D004397 8.3e-91 337.4 230 75.7
MD02G1195300 Malus domestica HOM05D003667 ORTHO05D004397 3.2e-90 335.5 227 77.1
Lj2A112G40 Lonicera japonica HOM05D003667 ORTHO05D004397 7.1e-90 334.3 227 75.8
Hma1.2p1_0106F.1_g051140 Hydrangea macrophylla HOM05D003667 ORTHO05D004397 4.6e-89 331.6 227 74.9
Eucgr.K01520 Eucalyptus grandis HOM05D003667 ORTHO05D004397 1.0e-88 330.5 229 74.7
Actinidia06203 Actinidia chinensis HOM05D003667 ORTHO05D004397 5.1e-88 328.2 228 72.4
Actinidia07960 Actinidia chinensis HOM05D003667 ORTHO05D004397 6.6e-88 327.8 228 72.8
Sed0010728 Sechium edule HOM05D003667 ORTHO05D004397 8.6e-88 327.4 228 74.6
Nn6g34578 Nelumbo nucifera HOM05D003667 ORTHO05D004397 5.6e-87 324.7 228 73.2
Prupe.2G153200 Prunus persica HOM05D003667 ORTHO05D004397 2.8e-86 322.4 224 76.3
ClCG02G007830 Citrullus lanatus HOM05D003667 ORTHO05D004397 6.2e-86 321.2 227 72.7
GSVIVG01029952001 Vitis vinifera HOM05D003667 ORTHO05D004397 1.1e-85 320.5 223 73.5
Atru.chr2.1481 Acer truncatum HOM05D003667 ORTHO05D004397 1.4e-85 320.1 219 74.4
Rhsim13G0206500 Rhododendron simsii HOM05D003667 ORTHO05D004397 3.1e-85 318.9 226 72.6
CSS0013214 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 5.2e-85 318.2 227 72.2
CSS0004374 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 6.8e-85 317.8 227 72.2
Sed0016620 Sechium edule HOM05D003667 ORTHO05D004397 1.5e-84 316.6 220 74.1
TAR623G0153 Trochodendron aralioides HOM05D003667 ORTHO05D004397 2.0e-84 316.2 224 73.7
Manes.09G137700 Manihot esculenta HOM05D003667 ORTHO05D004397 3.4e-84 315.5 229 72.1
PSO170G5262 Papaver somniferum HOM05D003667 ORTHO05D004397 5.8e-84 314.7 228 71.1
Nn7g37255 Nelumbo nucifera HOM05D003667 ORTHO05D004397 7.6e-84 314.3 227 73.6
TWI38G1994 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 1.3e-83 313.5 229 71.2
CiPaw.03G011100 Carya illinoinensis HOM05D003667 ORTHO05D004397 2.2e-83 312.8 220 75.0
PSO357G0141 Papaver somniferum HOM05D003667 ORTHO05D004397 4.9e-83 311.6 228 70.6
MBI17_g12494_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 2.4e-82 309.3 225 70.7
Sabra13G0056100 Salix brachista HOM05D003667 ORTHO05D004397 1.2e-81 307.0 220 71.8
arahy.Tifrunner.gnm1.ann1.FV18MX Arachis hypogaea HOM05D003667 ORTHO05D004397 1.6e-81 306.6 221 71.0
Sopen07g024170 Solanum pennellii HOM05D003667 ORTHO05D004397 6.0e-81 304.7 230 66.1
Potri.013G062900 Populus trichocarpa HOM05D003667 ORTHO05D004397 1.0e-80 303.9 220 71.4
Solyc07g047720.3 Solanum lycopersicum HOM05D003667 ORTHO05D004397 1.0e-80 303.9 232 65.5
Hund10761 Selenicereus undatus HOM05D003667 ORTHO05D004397 1.3e-80 303.5 225 70.7
TWI38G1198 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 2.3e-80 302.8 221 68.8
arahy.Tifrunner.gnm1.ann1.7QGR70 Arachis hypogaea HOM05D003667 ORTHO05D004397 3.0e-80 302.4 221 70.1
Aqoxy1G00535 Aquilegia oxysepala HOM05D003667 ORTHO05D004397 3.9e-80 302.0 224 70.5
PSO675G2224 Papaver somniferum HOM05D003667 ORTHO05D004397 5.1e-80 301.6 220 68.2
PGSC0003DMG400006127 Solanum tuberosum HOM05D003667 ORTHO05D004397 6.6e-80 301.2 239 64.4
Glyma.08G304700 Glycine max HOM05D003667 ORTHO05D004397 8.7e-80 300.8 225 69.8
Haze_14026 Corylus avellana HOM05D003667 ORTHO05D004397 1.5e-79 300.1 221 72.4
Phvul.006G027100 Phaseolus vulgaris HOM05D003667 ORTHO05D004397 1.5e-79 300.1 222 70.3
Ca_13917_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 1.9e-79 299.7 231 67.5
PGSC0003DMG400018832 Solanum tuberosum HOM05D003667 ORTHO05D004397 2.5e-79 299.3 238 65.5
arahy.Tifrunner.gnm1.ann1.VNW58P Arachis hypogaea HOM05D003667 ORTHO05D004397 3.3e-79 298.9 218 70.2
Nitab4.5_0001741g0020 Nicotiana tabacum HOM05D003667 ORTHO05D004397 3.3e-79 298.9 245 64.5
Nitab4.5_0001774g0040 Nicotiana tabacum HOM05D003667 ORTHO05D004397 5.6e-79 298.1 236 63.6
HanXRQChr07g0197181 Helianthus annuus HOM05D003667 ORTHO05D004397 7.3e-79 297.7 226 68.1
TPR.G8769 Trifolium pratense HOM05D003667 ORTHO05D004397 7.3e-79 297.7 222 69.8
Oeu035461.1 Olea europaea HOM05D003667 ORTHO05D004397 9.6e-79 297.4 235 63.8
MBI05_g12099_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 6.2e-78 294.7 210 72.4
Lalb_Chr17g0348151 Lupinus albus HOM05D003667 ORTHO05D004397 8.1e-78 294.3 221 71.0
Medtr3g450200 Medicago truncatula HOM05D003667 ORTHO05D004397 1.8e-77 293.1 228 68.0
PSO541G6155 Papaver somniferum HOM05D003667 ORTHO05D004397 1.8e-77 293.1 220 67.3
CAN.G992.19 Capsicum annuum HOM05D003667 ORTHO05D004397 3.1e-77 292.4 236 62.7
Migut.L01870 Erythranthe guttata HOM05D003667 ORTHO05D004397 3.1e-77 292.4 239 63.6
BraA05t19858Z Brassica rapa HOM05D003667 ORTHO05D004397 5.3e-77 291.6 221 65.2
AL4G33130 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 1.5e-76 290.0 221 65.6
BcaB02g09321 Brassica carinata HOM05D003667 ORTHO05D004397 2.0e-76 289.7 221 64.3
Lj2g0005685 Lotus japonicus HOM05D003667 ORTHO05D004397 2.0e-76 289.7 219 68.5
A05p08960 Brassica napus HOM05D003667 ORTHO05D004397 2.6e-76 289.3 221 64.7
Cpa.g.sc28.13 Carica papaya HOM05D003667 ORTHO05D004397 3.4e-76 288.9 219 66.2
Glyma.18G114700 Glycine max HOM05D003667 ORTHO05D004397 4.4e-76 288.5 225 68.0
Carub.0004s1876 Capsella rubella HOM05D003667 ORTHO05D004397 5.8e-76 288.1 221 65.2
VMungo0540G2144 Vigna mungo HOM05D003667 ORTHO05D004397 9.9e-76 287.3 217 67.7
AT2G36900 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 1.3e-75 287.0 220 65.9
MSTRG.26557 Avicennia marina HOM05D003667 ORTHO05D004397 1.3e-75 287.0 238 63.4
C04p11070 Brassica napus HOM05D003667 ORTHO05D004397 1.3e-75 287.0 221 63.3
BolC4t22755H Brassica oleracea HOM05D003667 ORTHO05D004397 1.3e-75 287.0 221 63.3
THA.LOC104823778 Tarenaya hassleriana HOM05D003667 ORTHO05D004397 1.3e-75 287.0 228 64.5
Psat5g209680 Pisum sativum HOM05D003667 ORTHO05D004397 2.2e-75 286.2 229 65.9
Thhalv10017208m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 2.9e-75 285.8 221 64.3
Ca_06238_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 4.9e-75 285.0 222 67.6
CARHR131380 Cardamine hirsuta HOM05D003667 ORTHO05D004397 6.4e-75 284.6 221 65.6
Medtr5g090520 Medicago truncatula HOM05D003667 ORTHO05D004397 2.4e-74 282.7 221 65.6
Sp4g19200 Schrenkiella parvula HOM05D003667 ORTHO05D004397 1.6e-73 280.0 221 62.9
Thhalv10014611m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 7.9e-73 277.7 221 63.8
CDE10G1021 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 6.6e-72 274.6 219 68.0
Zm00001eb052810 Zea mays HOM05D003667 ORTHO05D004397 8.7e-72 274.2 234 62.8
AL8G24670 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 1.5e-71 273.5 221 62.9
Carub.0008s1055 Capsella rubella HOM05D003667 ORTHO05D004397 1.5e-71 273.5 221 63.8
CARHR257860 Cardamine hirsuta HOM05D003667 ORTHO05D004397 1.9e-71 273.1 221 62.4
Psat2g018160 Pisum sativum HOM05D003667 ORTHO05D004397 1.9e-71 273.1 222 63.5
TPR.G14738 Trifolium pratense HOM05D003667 ORTHO05D004397 3.3e-71 272.3 224 65.6
Os03g0655200 Oryza sativa ssp. japonica HOM05D003667 ORTHO05D004397 9.6e-71 270.8 231 61.9
SEGI_40073 Sequoiadendron giganteum HOM05D003667 ORTHO05D004397 1.3e-70 270.4 232 61.2
AT5G50440 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 1.1e-69 267.3 221 61.5
Aa31LG6G14320 Aethionema arabicum HOM05D003667 ORTHO05D004397 1.4e-69 266.9 224 61.2
SGA_v2.0_scaffold392G50657 Striga asiatica HOM05D003667 ORTHO05D004397 2.4e-69 266.2 255 57.6
SGA_v2.0_scaffold41G15803 Striga asiatica HOM05D003667 ORTHO05D004397 2.4e-69 266.2 280 54.6
Cc03_g11050 Coffea canephora HOM05D003667 ORTHO05D004397 1.2e-68 263.8 224 59.8
HanXRQChr14g0453611 Helianthus annuus HOM05D003667 ORTHO05D004397 1.3e-67 260.4 220 61.8
unitig_8.g4943 Utricularia gibba HOM05D003667 ORTHO05D004397 2.2e-67 259.6 239 59.0
HPP92_027259 Vanilla planifolia HOM05D003667 ORTHO05D004397 5.5e-66 255.0 187 65.8
Lsat_1_v5_gn_6_31701 Lactuca sativa HOM05D003667 ORTHO05D004397 3.5e-65 252.3 228 59.6
Peaxi162Scf00776g00027 Petunia axillaris HOM05D003667 ORTHO05D004397 1.8e-64 250.0 214 60.3
Mapoly0001s0234 Marchantia polymorpha HOM05D003667 ORTHO05D004397 3.9e-64 248.8 216 57.9
AUR62008662 Chenopodium quinoa HOM05D003667 ORTHO05D004397 5.6e-63 245.0 223 59.2
Lsat_1_v5_gn_2_103600 Lactuca sativa HOM05D003667 ORTHO05D004397 5.6e-63 245.0 217 61.3
DCAR_013483 Daucus carota HOM05D003667 ORTHO05D004397 7.4e-63 244.6 163 76.1
Dinv05568 Davidia involucrata HOM05D003667 ORTHO05D004397 5.3e-61 238.4 175 71.4
Sc01g0006150 Simmondsia chinensis HOM05D003667 ORTHO05D004397 3.4e-60 235.7 172 70.3
EL10Ac7g17477 Beta vulgaris HOM05D003667 ORTHO05D004397 1.7e-59 233.4 221 58.4
SMO358G0442 Selaginella moellendorffii HOM05D003667 ORTHO05D004397 4.9e-59 231.9 228 52.6
Prupe.7G022400 Prunus persica HOM05D003667 ORTHO05D004397 8.4e-59 231.1 161 74.5
ECA238G3478 Erigeron canadensis HOM05D003667 ORTHO05D004397 1.1e-58 230.7 226 55.8
CiPaw.04G007600 Carya illinoinensis HOM05D003667 ORTHO05D004397 5.5e-58 228.4 159 74.2
Ah.02g128310 Amaranthus hybridus HOM05D003667 ORTHO05D004397 1.3e-56 223.8 176 68.8
BcaC02g11814 Brassica carinata HOM05D003667 ORTHO05D004397 1.1e-55 220.7 163 66.9
Pp3c7_13000 Physcomitrium patens HOM05D003667 ORTHO05D004397 1.3e-54 217.2 245 46.9
Lj6g0022641 Lotus japonicus HOM05D003667 ORTHO05D004397 3.7e-54 215.7 152 72.4
Pp3c11_11980 Physcomitrium patens HOM05D003667 ORTHO05D004397 1.4e-53 213.8 238 47.9
arahy.Tifrunner.gnm1.ann1.B982CP Arachis hypogaea HOM05D003667 ORTHO05D004397 1.2e-52 210.7 221 54.3
Rhsim02G0195900 Rhododendron simsii HOM05D003667 ORTHO05D004397 2.0e-52 209.9 141 76.6
Dinv25059 Davidia involucrata HOM05D003667 ORTHO05D004397 1.5e-44 183.7 124 75.8
MSTRG.10431 Avicennia marina HOM05D003667 ORTHO05D004397 2.0e-44 183.3 145 62.8
unitig_578.g16057 Utricularia gibba HOM05D003667 ORTHO05D004397 4.5e-44 182.2 204 51.0
CDE10G1036 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 3.2e-42 176.0 219 48.9
Nitab4.5_0001701g0060 Nicotiana tabacum HOM05D003667 ORTHO05D004397 4.6e-41 172.2 220 44.1
AagrBONN_evm.TU.Sc2ySwM_117.3822 Anthoceros agrestis HOM05D003667 ORTHO05D004397 2.5e-39 166.4 187 49.2
Cre12.g554200 Chlamydomonas reinhardtii HOM05D003667 ORTHO05D004397 9.7e-39 164.5 223 43.9
AagrBONN_evm.TU.Sc2ySwM_362.869 Anthoceros agrestis HOM05D003667 ORTHO05D004397 1.3e-38 164.1 193 47.7
Haze_20440 Corylus avellana HOM05D003667 ORTHO05D004397 1.3e-38 164.1 116 69.8
Oeu063104.1 Olea europaea HOM05D003667 ORTHO05D004397 3.7e-38 162.5 233 45.1
Cfa017699 Carpinus fangiana HOM05D003667 ORTHO05D004397 4.8e-38 162.2 115 68.7
Lalb_Chr10g0106501 Lupinus albus HOM05D003667 ORTHO05D004397 2.0e-36 156.8 115 69.6
Solyc05g040100.4 Solanum lycopersicum HOM05D003667 ORTHO05D004397 4.5e-36 155.6 191 46.6
Actinidia03933 Actinidia chinensis HOM05D003667 ORTHO05D004397 5.0e-35 152.1 145 57.9
CSS0044789 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 1.4e-34 150.6 141 59.6
Oeu003870.1 Olea europaea HOM05D003667 ORTHO05D004397 2.1e-33 146.7 126 65.1
BcaC02g10601 Brassica carinata HOM05D003667 ORTHO05D004397 3.3e-31 139.4 185 45.9
PRCOL_00002098 Prasinoderma coloniale HOM05D003667 ORTHO05D004397 7.4e-31 138.3 217 38.2
MCO05G601 Micromonas commoda HOM05D003667 ORTHO05D004397 8.2e-30 134.8 218 35.3
arahy.Tifrunner.gnm1.ann1.K13S6W Arachis hypogaea HOM05D004599 ORTHO05D005564 5.9e-28 128.6 137 52.6
AUR62033108 Chenopodium quinoa HOM05D003667 ORTHO05D004397 2.2e-27 126.7 90 76.7
QL07p048797 Quercus lobata HOM05D000002 ORTHO05D000001 6.5e-27 125.2 174 50.6
Rhsim02G0194700 Rhododendron simsii HOM05D003667 ORTHO05D004397 9.4e-26 121.3 84 70.2
Rhsim02G0195800 Rhododendron simsii HOM05D003667 ORTHO05D004397 9.4e-26 121.3 84 70.2
AagrBONN_evm.TU.Sc2ySwM_368.3326 Anthoceros agrestis HOM05D003667 ORTHO05D004397 2.1e-25 120.2 181 41.4
arahy.Tifrunner.gnm1.ann1.835HL2 Arachis hypogaea HOM05D004313 ORTHO05D004397 4.0e-24 115.9 90 65.6
BcaB06g28959 Brassica carinata HOM05D003667 ORTHO05D004397 5.2e-24 115.5 226 35.4
CAN.G1036.8 Capsicum annuum HOM05D003667 ORTHO05D004397 4.4e-23 112.5 139 47.5
FAN16G1288 Fragaria x ananassa HOM05D003667 ORTHO05D004397 1.3e-22 110.9 55 96.4
arahy.Tifrunner.gnm1.ann1.SS7A45 Arachis hypogaea HOM05D000726 ORTHO05D004397 1.4e-21 107.5 77 71.4
Glyma.02G282800 Glycine max HOM05D003667 ORTHO05D004397 5.3e-21 105.5 117 51.3
CSS0038188 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 7.0e-21 105.1 80 68.8
arahy.Tifrunner.gnm1.ann1.SJAT5A Arachis hypogaea HOM05D003667 ORTHO05D003672 7.7e-20 101.7 90 62.2
Actinidia37807 Actinidia chinensis HOM05D003667 ORTHO05D004397 1.3e-19 100.9 168 39.3
CBR_g20321 Chara braunii HOM05D003667 ORTHO05D004397 2.9e-19 99.8 94 53.2
arahy.Tifrunner.gnm1.ann1.X6I371 Arachis hypogaea HOM05D003667 ORTHO05D004397 2.5e-18 96.7 100 53.0
Nitab4.5_0002669g0010 Nicotiana tabacum HOM05D003667 ORTHO05D004397 4.7e-17 92.4 127 47.2
Lalb_Chr10g0106511 Lupinus albus HOM05D003667 ORTHO05D004397 8.0e-17 91.7 79 63.3
Ah.08g213160 Amaranthus hybridus HOM05D003667 ORTHO05D004397 1.0e-16 91.3 70 68.6
Ah.08g213170 Amaranthus hybridus HOM05D003667 ORTHO05D004397 2.6e-15 86.7 80 53.8
BolC4t28047H Brassica oleracea HOM05D003667 ORTHO05D004397 2.8e-14 83.2 53 73.6
BraA04t18306Z Brassica rapa HOM05D003667 ORTHO05D004397 3.7e-14 82.8 62 66.1
A04p28220 Brassica napus HOM05D003667 ORTHO05D004397 4.8e-14 82.4 63 66.7
C04p65580 Brassica napus HOM05D003667 ORTHO05D004397 4.8e-14 82.4 63 66.7
C04p25660 Brassica napus HOM05D003667 ORTHO05D004397 6.3e-14 82.0 203 31.0
C05p50890 Brassica napus HOM05D003667 ORTHO05D004397 6.3e-14 82.0 203 31.0
AUR62033107 Chenopodium quinoa HOM05D003667 ORTHO05D004397 6.3e-14 82.0 75 61.3
FvH4_3g32534 Fragaria vesca HOM05D003667 ORTHO05D004397 8.3e-14 81.6 56 83.9
TPR.G36075 Trifolium pratense HOM05D003667 ORTHO05D004397 1.6e-12 77.4 53 73.6
Solyc05g040090.1 Solanum lycopersicum HOM05D003667 ORTHO05D004397 1.7e-11 73.9 83 48.2
VMungo0720G0063 Vigna mungo HOM05D003667 ORTHO05D004397 2.2e-11 73.6 72 54.2
BNapus_Darmor_BZH_scaffold_271p00010 Brassica napus HOM05D003667 ORTHO05D004397 1.2e-09 67.8 190 28.9
HanXRQChr04g0115761 Helianthus annuus HOM05D003667 ORTHO05D004397 1.2e-09 67.8 53 62.3
FvH4_5g38702 Fragaria vesca HOM05D003667 ORTHO05D004397 8.0e-09 65.1 48 77.1
COL.COLO4_28622 Corchorus olitorius HOM05D003667 ORTHO05D004397 1.8e-08 63.9 78 47.4
MD05G1212000 Malus domestica HOM05D003667 ORTHO05D246792 2.0e-07 60.5 43 67.4
VMungo1383G0333 Vigna mungo HOM05D003667 ORTHO05D036049 6.3e-06 55.5 45 68.9
Oeu032224.2 Olea europaea HOM05D003667 ORTHO05D004397 8.3e-06 55.1 44 68.2


User provided reference genes

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