Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G0515 Fragaria x ananassa HOM05D006215 ORTHO05D007719 1.1e-90 336.7 167 100.0
FAN25G2739 Fragaria x ananassa HOM05D006215 ORTHO05D007719 2.2e-72 275.8 207 72.0
FAN11G1504 Fragaria x ananassa HOM05D006215 ORTHO05D007719 8.1e-67 257.3 199 69.8
RcHm_v2.0_Chr5g0031011 Rosa chinensis HOM05D006215 ORTHO05D007719 2.2e-64 249.2 199 67.3
MD03G1242500 Malus domestica HOM05D006215 ORTHO05D007719 4.9e-56 221.5 197 59.4
Prupe.4G165400 Prunus persica HOM05D006215 ORTHO05D007719 5.5e-55 218.0 197 58.9
FvH4_3g18360 Fragaria vesca HOM05D006215 ORTHO05D007719 4.3e-52 208.4 106 95.3
QL02p012562 Quercus lobata HOM05D006215 ORTHO05D007719 2.2e-48 196.1 188 55.9
Cpa.g.sc26.282 Carica papaya HOM05D006215 ORTHO05D007719 1.1e-47 193.7 189 54.5
Ciclev10002478m.g Citrus clementina HOM05D006215 ORTHO05D007719 3.2e-47 192.2 190 53.2
Potri.002G018100 Populus trichocarpa HOM05D006215 ORTHO05D007719 1.3e-45 186.8 189 52.9
vmacro21863 Vaccinium macrocarpon HOM05D006215 ORTHO05D007719 5.1e-45 184.9 197 50.8
Atru.chr13.240 Acer truncatum HOM05D006215 ORTHO05D007719 6.7e-45 184.5 199 51.3
Dinv31883 Davidia involucrata HOM05D006215 ORTHO05D007719 8.7e-45 184.1 198 49.5
CANSAT25G1322 Cannabis sativa HOM05D006215 ORTHO05D007719 1.9e-44 183.0 185 50.8
Cfa013993 Carpinus fangiana HOM05D006215 ORTHO05D007719 1.9e-44 183.0 184 52.7
COL.COLO4_26102 Corchorus olitorius HOM05D006215 ORTHO05D007719 2.5e-44 182.6 181 51.9
Gohir.D01G096200 Gossypium hirsutum HOM05D006215 ORTHO05D007719 2.5e-44 182.6 190 52.6
Solyc04g081850.4 Solanum lycopersicum HOM05D006215 ORTHO05D007719 2.5e-44 182.6 196 48.0
Sopen04g035480 Solanum pennellii HOM05D006215 ORTHO05D007719 2.5e-44 182.6 179 50.3
CSS0039588 Camellia sinensis var. sinensis HOM05D006215 ORTHO05D007719 3.3e-44 182.2 183 52.5
Manes.18G010300 Manihot esculenta HOM05D006215 ORTHO05D007719 3.3e-44 182.2 189 52.4
CSS0005676 Camellia sinensis var. sinensis HOM05D006215 ORTHO05D007719 4.3e-44 181.8 186 52.2
Lj1g0006385 Lotus japonicus HOM05D006215 ORTHO05D007719 4.3e-44 181.8 199 48.2
Duzib041G0142 Durio zibethinus HOM05D006215 ORTHO05D007719 7.4e-44 181.0 187 50.8
Thecc.08G049400 Theobroma cacao HOM05D006215 ORTHO05D007719 7.4e-44 181.0 183 51.9
Lj4C18G8 Lonicera japonica HOM05D000114 ORTHO05D009837 1.3e-43 180.3 204 46.6
Gorai.002G121700 Gossypium raimondii HOM05D006215 ORTHO05D007719 2.2e-43 179.5 190 51.6
GSVIVG01009974001 Vitis vinifera HOM05D006215 ORTHO05D009429 2.2e-43 179.5 173 54.3
Gohir.A01G109400 Gossypium hirsutum HOM05D006215 ORTHO05D007719 2.8e-43 179.1 190 52.1
PGSC0003DMG400009949 Solanum tuberosum HOM05D006215 ORTHO05D007719 2.8e-43 179.1 179 48.6
TWI12G0400 Tripterygium wilfordii HOM05D006215 ORTHO05D007719 4.8e-43 178.3 176 53.4
CsaV3_3G046060 Cucumis sativus L. HOM05D006215 ORTHO05D007719 6.3e-43 177.9 181 49.7
Phvul.009G018900 Phaseolus vulgaris HOM05D006215 ORTHO05D007719 6.3e-43 177.9 205 46.8
Rhsim06G0017400 Rhododendron simsii HOM05D006215 ORTHO05D007719 6.3e-43 177.9 178 51.7
VMungo1215G3215 Vigna mungo HOM05D006215 ORTHO05D007719 6.3e-43 177.9 197 49.7
DCAR_009503 Daucus carota HOM05D006215 ORTHO05D007719 8.2e-43 177.6 175 53.7
Glyma.06G021900 Glycine max HOM05D006215 ORTHO05D007719 1.1e-42 177.2 196 50.0
CANSAT80G2378 Cannabis sativa HOM05D006215 ORTHO05D007719 1.4e-42 176.8 188 48.9
Sed0008956 Sechium edule HOM05D006215 ORTHO05D007719 1.4e-42 176.8 174 51.1
Glyma.04G021700 Glycine max HOM05D006215 ORTHO05D007719 1.8e-42 176.4 190 50.0
Aa31LG4G6130 Aethionema arabicum HOM05D006215 ORTHO05D007719 3.1e-42 175.6 131 66.4
Lalb_Chr23g0266051 Lupinus albus HOM05D006215 ORTHO05D007719 4.1e-42 175.3 191 48.7
Sabra02G0014400 Salix brachista HOM05D006215 ORTHO05D007719 6.9e-42 174.5 222 45.5
Lsat_1_v5_gn_8_29640 Lactuca sativa HOM05D006215 ORTHO05D007719 9.0e-42 174.1 175 50.9
Nn5g30812 Nelumbo nucifera HOM05D006215 ORTHO05D007719 1.2e-41 173.7 174 51.1
arahy.Tifrunner.gnm1.ann1.89BLSN Arachis hypogaea HOM05D006215 ORTHO05D007719 1.5e-41 173.3 174 52.9
Psat5g012560 Pisum sativum HOM05D006215 ORTHO05D007719 1.5e-41 173.3 199 47.2
HanXRQChr13g0386921 Helianthus annuus HOM05D006215 ORTHO05D007719 2.0e-41 172.9 176 51.1
Ca_15473_v3 Cicer arietinum L. HOM05D006215 ORTHO05D007719 1.7e-40 169.9 203 46.8
Medtr3g114470 Medicago truncatula HOM05D006215 ORTHO05D007719 2.9e-40 169.1 195 46.7
MSTRG.1158 Avicennia marina HOM05D006215 ORTHO05D007719 3.8e-40 168.7 199 46.2
arahy.Tifrunner.gnm1.ann1.SEC0EX Arachis hypogaea HOM05D006215 ORTHO05D007719 6.5e-40 167.9 190 48.9
Migut.C00887 Erythranthe guttata HOM05D006215 ORTHO05D007719 8.5e-40 167.5 175 49.7
EL10Ac1g02129 Beta vulgaris HOM05D006215 ORTHO05D007719 5.5e-39 164.9 177 47.5
HPP92_025438 Vanilla planifolia HOM05D006215 ORTHO05D007719 5.5e-39 164.9 179 48.0
CAN.G311.58 Capsicum annuum HOM05D006215 ORTHO05D007719 7.2e-39 164.5 205 45.4
ECA233G5922 Erigeron canadensis HOM05D000114 ORTHO05D000075 7.2e-39 164.5 180 47.8
A07p41490 Brassica napus HOM05D006215 ORTHO05D007719 2.1e-38 162.9 189 47.1
BraA07t31681Z Brassica rapa HOM05D006215 ORTHO05D007719 2.1e-38 162.9 189 47.1
Aqoxy5G01831 Aquilegia oxysepala HOM05D006215 ORTHO05D007719 2.7e-38 162.5 176 49.4
Hund01696 Selenicereus undatus HOM05D006215 ORTHO05D007719 2.7e-38 162.5 182 46.7
SGA_v2.0_scaffold292G47375 Striga asiatica HOM05D006215 ORTHO05D007719 4.6e-38 161.8 178 49.4
BcaB02g07052 Brassica carinata HOM05D006215 ORTHO05D007719 7.9e-38 161.0 185 49.2
BcaC08g45544 Brassica carinata HOM05D006215 ORTHO05D007719 1.8e-37 159.8 190 50.0
C06p32240 Brassica napus HOM05D006215 ORTHO05D007719 1.8e-37 159.8 190 50.0
BolC6t38347H Brassica oleracea HOM05D006215 ORTHO05D007719 1.8e-37 159.8 190 50.0
Oeu033622.1 Olea europaea HOM05D006215 ORTHO05D007719 3.9e-37 158.7 190 46.3
A07p28630 Brassica napus HOM05D006215 ORTHO05D007719 1.1e-36 157.1 190 47.4
BraA07t30504Z Brassica rapa HOM05D006215 ORTHO05D007719 1.1e-36 157.1 190 47.4
Thhalv10019087m.g Eutrema salsugineum HOM05D006215 ORTHO05D007719 1.1e-36 157.1 174 50.0
AT1G75980 Arabidopsis thaliana HOM05D006215 ORTHO05D007719 4.3e-36 155.2 174 47.7
AL2G36000 Arabidopsis lyrata HOM05D006215 ORTHO05D007719 7.4e-36 154.5 216 42.1
Carub.0002s2287 Capsella rubella HOM05D006215 ORTHO05D007719 7.4e-36 154.5 174 48.3
SalBow7G2905 Salvia bowleyana HOM05D006215 ORTHO05D007719 7.4e-36 154.5 219 40.2
Nitab4.5_0004361g0040 Nicotiana tabacum HOM05D006215 ORTHO05D007719 9.7e-36 154.1 93 73.1
AUR62013912 Chenopodium quinoa HOM05D006215 ORTHO05D007719 1.3e-35 153.7 171 46.2
Cc10_g01280 Coffea canephora HOM05D006215 ORTHO05D007719 2.8e-35 152.5 99 66.7
THA.LOC104811433 Tarenaya hassleriana HOM05D006215 ORTHO05D007719 2.8e-35 152.5 200 45.0
BcaB05g24966 Brassica carinata HOM05D006215 ORTHO05D007719 4.8e-35 151.8 199 43.7
unitig_32.g11202 Utricularia gibba HOM05D006215 ORTHO05D007719 4.8e-35 151.8 187 46.5
Zm00001eb209250 Zea mays HOM05D006215 ORTHO05D007719 4.8e-35 151.8 188 44.1
C06p49900 Brassica napus HOM05D006215 ORTHO05D007719 8.2e-35 151.0 173 46.8
MELO3C003734.2 Cucumis melo HOM05D006215 ORTHO05D007719 1.4e-34 150.2 164 47.6
PSO339G6481 Papaver somniferum HOM05D006215 ORTHO05D007719 1.4e-34 150.2 185 45.9
CARHR069510 Cardamine hirsuta HOM05D006215 ORTHO05D007719 1.8e-34 149.8 190 43.7
PSO384G0480 Papaver somniferum HOM05D006215 ORTHO05D007719 4.1e-34 148.7 185 45.9
BcaC08g47309 Brassica carinata HOM05D006215 ORTHO05D007719 6.9e-34 147.9 173 46.2
CiPaw.07G144900 Carya illinoinensis HOM05D006215 ORTHO05D007719 6.9e-34 147.9 100 70.0
Sp5g31100 Schrenkiella parvula HOM05D006215 ORTHO05D007719 9.1e-34 147.5 173 46.8
Eucgr.F03725 Eucalyptus grandis HOM05D006215 ORTHO05D007719 2.6e-33 146.0 86 73.3
Actinidia15453 Actinidia chinensis HOM05D006215 ORTHO05D007719 5.5e-31 138.3 152 50.7
Sc15g0004750 Simmondsia chinensis HOM05D006215 ORTHO05D007719 7.2e-31 137.9 101 66.3
ClCG05G015490 Citrullus lanatus HOM05D006215 ORTHO05D007719 9.4e-31 137.5 181 43.6
Rhsim06G0015300 Rhododendron simsii HOM05D006215 ORTHO05D007719 2.7e-30 136.0 186 44.6
CANSAT25G3730 Cannabis sativa HOM05D006215 ORTHO05D007719 4.7e-30 135.2 103 60.2
CDE04G3084 Ceratophyllum demersum HOM05D006215 ORTHO05D007719 4.7e-30 135.2 103 61.2
TPR.G38171 Trifolium pratense HOM05D006215 ORTHO05D007719 6.1e-30 134.8 110 59.1
SHI08014 Sapria himalayana HOM05D006215 ORTHO05D007719 1.0e-29 134.0 105 59.0
Haze_22683 Corylus avellana HOM05D006215 ORTHO05D007719 1.5e-28 130.2 125 56.0
Actinidia17011 Actinidia chinensis HOM05D006215 ORTHO05D007719 2.2e-27 126.3 163 43.6
Os02g0120400 Oryza sativa ssp. japonica HOM05D006215 ORTHO05D007719 4.8e-27 125.2 137 47.4
Ah.06g187190 Amaranthus hybridus HOM05D006215 ORTHO05D007719 1.5e-25 120.2 110 56.4
AUR62018279 Chenopodium quinoa HOM05D006215 ORTHO05D007719 3.8e-24 115.5 169 37.9
ATR1088G027 Amborella trichopoda HOM05D006215 ORTHO05D007719 5.0e-24 115.2 90 62.2
Peaxi162Scf00860g00212 Petunia axillaris HOM05D006215 ORTHO05D007719 4.7e-22 108.6 184 36.4
PGR083G2507 Punica granatum HOM05D006215 ORTHO05D007719 2.3e-21 106.3 196 37.2
SEGI_18034 Sequoiadendron giganteum HOM05D006215 ORTHO05D007719 8.8e-21 104.4 106 50.0
Mapoly0001s0313 Marchantia polymorpha HOM05D006215 ORTHO05D007719 2.0e-20 103.2 170 34.7
Pp3c20_3890 Physcomitrium patens HOM05D006215 ORTHO05D007719 4.4e-20 102.1 169 34.9
Glyma.02G160800 Glycine max HOM05D006215 ORTHO05D007719 4.8e-19 98.6 100 52.0
TAR625G0502 Trochodendron aralioides HOM05D006215 ORTHO05D007719 8.2e-19 97.8 143 41.3
SMO367G0408 Selaginella moellendorffii HOM05D006215 ORTHO05D007719 7.7e-17 91.3 180 32.2
Duzib093G1443 Durio zibethinus HOM05D006215 ORTHO05D007719 5.5e-15 85.1 124 41.1
AagrBONN_evm.TU.Sc2ySwM_117.1002 Anthoceros agrestis HOM05D006215 ORTHO05D007719 2.7e-14 82.8 111 42.3
BolC6t40028H Brassica oleracea HOM05D006215 ORTHO05D007719 1.4e-13 80.5 118 40.7
Eucgr.F03727 Eucalyptus grandis HOM05D006215 ORTHO05D007719 4.1e-10 68.9 35 88.6
TPR.G38152 Trifolium pratense HOM05D006215 ORTHO05D007719 5.3e-10 68.6 38 78.9
Cc10_g01290 Coffea canephora HOM05D006215 ORTHO05D007719 6.1e-06 55.1 36 66.7
Medtr6g083100 Medicago truncatula HOM05D006215 ORTHO05D007719 6.1e-06 55.1 95 32.6


User provided reference genes

Program Settings