Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G0508 Fragaria x ananassa HOM05D004118 ORTHO05D004686 0.0e+00 1312.4 740 100.0
FvH4_3g19150 Fragaria vesca HOM05D004118 ORTHO05D004686 0.0e+00 1238.8 745 91.5
FAN11G3070 Fragaria x ananassa HOM05D004118 ORTHO05D004686 0.0e+00 1224.9 742 91.2
FAN25G0990 Fragaria x ananassa HOM05D004118 ORTHO05D004686 0.0e+00 1181.4 746 88.2
FAN16G2866 Fragaria x ananassa HOM05D004118 ORTHO05D004686 0.0e+00 1137.9 744 87.4
RcHm_v2.0_Chr5g0032241 Rosa chinensis HOM05D004118 ORTHO05D004686 1.2e-279 966.5 748 76.2
Prupe.4G173200 Prunus persica HOM05D004118 ORTHO05D004686 2.5e-192 676.4 787 60.2
MD03G1236100 Malus domestica HOM05D004118 ORTHO05D004686 3.0e-174 616.3 785 57.5
MD11G1256900 Malus domestica HOM05D004118 ORTHO05D004686 8.0e-167 591.7 791 54.5
Haze_09381 Corylus avellana HOM05D004118 ORTHO05D004686 4.3e-136 489.6 800 48.1
QL08p023555 Quercus lobata HOM05D004118 ORTHO05D004686 3.6e-135 486.5 796 50.8
Cfa020624 Carpinus fangiana HOM05D004118 ORTHO05D004686 4.8e-135 486.1 790 48.5
Manes.15G090200 Manihot esculenta HOM05D004118 ORTHO05D004686 5.3e-134 482.6 773 47.5
CiPaw.12G116800 Carya illinoinensis HOM05D004118 ORTHO05D004686 3.4e-133 479.9 779 48.3
CiPaw.11G166400 Carya illinoinensis HOM05D004118 ORTHO05D004686 7.1e-131 472.2 781 47.5
Cpa.g.sc80.12 Carica papaya HOM05D004118 ORTHO05D004686 2.3e-129 467.2 822 45.7
TWI39G0897 Tripterygium wilfordii HOM05D004118 ORTHO05D004686 2.5e-123 447.2 800 44.2
Nitab4.5_0000246g0070 Nicotiana tabacum HOM05D004118 ORTHO05D004686 7.1e-123 445.7 775 45.9
Manes.03G104700 Manihot esculenta HOM05D004118 ORTHO05D004686 5.1e-121 439.5 729 49.1
MSTRG.6813 Avicennia marina HOM05D004118 ORTHO05D004686 2.5e-120 437.2 794 43.8
Solyc07g062730.1 Solanum lycopersicum HOM05D004118 ORTHO05D004686 4.3e-120 436.4 785 45.6
Eucgr.F01179 Eucalyptus grandis HOM05D004118 ORTHO05D004686 1.3e-119 434.9 799 44.8
Potri.011G097700 Populus trichocarpa HOM05D004118 ORTHO05D004686 3.7e-119 433.3 793 44.6
Sabra11G0091500 Salix brachista HOM05D004118 ORTHO05D004686 4.8e-119 433.0 744 44.8
PGR083G2344 Punica granatum HOM05D004118 ORTHO05D004686 6.2e-119 432.6 790 44.2
Nitab4.5_0011677g0020 Nicotiana tabacum HOM05D004118 ORTHO05D004686 8.2e-119 432.2 779 44.0
Sopen07g030960 Solanum pennellii HOM05D004118 ORTHO05D004686 9.0e-118 428.7 773 47.9
Sabra11G0090500 Salix brachista HOM05D004118 ORTHO05D004686 4.5e-117 426.4 746 44.8
Duzib213G0890 Durio zibethinus HOM05D004118 ORTHO05D004686 3.8e-116 423.3 788 44.4
Thecc.07G100000 Theobroma cacao HOM05D004118 ORTHO05D004686 2.5e-115 420.6 798 46.1
PGSC0003DMG400012399 Solanum tuberosum HOM05D004118 ORTHO05D004686 1.2e-114 418.3 777 44.9
CSS0010936 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 1.0e-113 415.2 785 44.7
Glyma.13G273000 Glycine max HOM05D004118 ORTHO05D004686 1.0e-113 415.2 798 44.9
Medtr2g078530 Medicago truncatula HOM05D004118 ORTHO05D004686 1.5e-112 411.4 783 43.3
CAN.G162.27 Capsicum annuum HOM05D004118 ORTHO05D004686 2.5e-112 410.6 731 45.1
TAR627G0391 Trochodendron aralioides HOM05D004118 ORTHO05D004686 1.3e-111 408.3 773 48.4
VMungo1080G0043 Vigna mungo HOM05D004118 ORTHO05D004686 3.1e-110 403.7 803 43.0
Sc16g0007320 Simmondsia chinensis HOM05D004118 ORTHO05D004686 5.3e-110 402.9 793 41.6
DCAR_021002 Daucus carota HOM05D004118 ORTHO05D004686 4.5e-109 399.8 802 41.4
TWI38G2280 Tripterygium wilfordii HOM05D004118 ORTHO05D004686 1.4e-107 394.8 755 43.4
Potri.001G373100 Populus trichocarpa HOM05D004118 ORTHO05D004686 2.5e-107 394.0 750 42.8
Phvul.005G069300 Phaseolus vulgaris HOM05D004118 ORTHO05D004686 1.4e-105 388.3 772 43.3
MELO3C019394.2 Cucumis melo HOM05D004118 ORTHO05D004686 4.3e-104 383.3 806 44.4
Cc05_g11580 Coffea canephora HOM05D004118 ORTHO05D004686 5.7e-104 382.9 864 42.2
Sabra16G0245500 Salix brachista HOM05D004118 ORTHO05D004686 5.7e-104 382.9 742 41.4
CsaV3_3G019580 Cucumis sativus L. HOM05D004118 ORTHO05D004686 7.4e-104 382.5 809 44.3
Ciclev10007570m.g Citrus clementina HOM05D004118 ORTHO05D004686 1.3e-103 381.7 795 41.8
Gohir.A13G147400 Gossypium hirsutum HOM05D004118 ORTHO05D004686 1.1e-102 378.6 788 41.1
Gohir.D13G152264 Gossypium hirsutum HOM05D004118 ORTHO05D004686 1.1e-102 378.6 780 41.7
Psat5g241400 Pisum sativum HOM05D004118 ORTHO05D004686 4.1e-102 376.7 780 46.2
Peaxi162Scf00000g00285 Petunia axillaris HOM05D004118 ORTHO05D004686 5.9e-101 372.9 740 42.6
Nn1g04275 Nelumbo nucifera HOM05D004118 ORTHO05D004686 5.0e-100 369.8 796 41.6
CANSAT35G0858 Cannabis sativa HOM05D004118 ORTHO05D004686 1.4e-99 368.2 802 42.4
SGA_v2.0_scaffold73G24222 Striga asiatica HOM05D004118 ORTHO05D004686 1.4e-99 368.2 796 42.3
Gorai.013G171900 Gossypium raimondii HOM05D004118 ORTHO05D004686 5.5e-99 366.3 774 43.9
Lalb_Chr20g0109451 Lupinus albus HOM05D004118 ORTHO05D004686 1.4e-97 361.7 754 41.8
Nitab4.5_0003033g0050 Nicotiana tabacum HOM05D004118 ORTHO05D004686 2.3e-97 360.9 760 45.3
SalBow8G5405 Salvia bowleyana HOM05D004118 ORTHO05D004686 3.9e-97 360.1 729 42.9
Aqoxy1G02262 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 3.3e-96 357.1 775 41.3
Sed0017211 Sechium edule HOM05D004118 ORTHO05D004686 7.4e-96 355.9 788 44.4
Nitab4.5_0000332g0190 Nicotiana tabacum HOM05D004118 ORTHO05D004686 1.3e-95 355.1 767 44.1
Actinidia35234 Actinidia chinensis HOM05D004118 ORTHO05D001556 2.2e-95 354.4 712 45.9
THA.LOC104810455 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 2.8e-95 354.0 768 39.1
Duzib170G0047 Durio zibethinus HOM05D004118 ORTHO05D004686 2.4e-94 350.9 755 42.1
Sp3g13300 Schrenkiella parvula HOM05D004118 ORTHO05D004686 9.1e-94 349.0 786 39.1
EL10Ac4g08266 Beta vulgaris HOM05D004118 ORTHO05D004686 5.9e-93 346.3 818 41.8
Lsat_1_v5_gn_9_98421 Lactuca sativa HOM05D004118 ORTHO05D004686 1.7e-92 344.7 778 39.6
Lj8C153G19 Lonicera japonica HOM05D004118 ORTHO05D004686 2.9e-92 344.0 747 40.0
PGSC0003DMG400015371 Solanum tuberosum HOM05D004118 ORTHO05D004686 3.8e-92 343.6 730 38.4
Glyma.12G227300 Glycine max HOM05D004118 ORTHO05D004686 2.5e-91 340.9 806 40.8
CSS0009782 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 3.2e-91 340.5 690 40.9
Actinidia07500 Actinidia chinensis HOM05D004118 ORTHO05D004686 1.2e-90 338.6 741 43.6
Peaxi162Scf00069g00197 Petunia axillaris HOM05D004118 ORTHO05D004686 1.2e-90 338.6 773 39.8
vmacro11898 Vaccinium macrocarpon HOM05D004118 ORTHO05D004686 1.6e-90 338.2 768 41.0
Aa31LG8G2310 Aethionema arabicum HOM05D004118 ORTHO05D004686 2.1e-90 337.8 788 38.6
Dinv14950 Davidia involucrata HOM05D004118 ORTHO05D004686 2.7e-90 337.4 647 43.6
Dinv20215 Davidia involucrata HOM05D004118 ORTHO05D004686 8.0e-90 335.9 760 41.3
Thhalv10020211m.g Eutrema salsugineum HOM05D004118 ORTHO05D004686 1.4e-89 335.1 782 39.8
MSTRG.15246 Avicennia marina HOM05D004118 ORTHO05D004686 3.3e-88 330.5 734 39.8
TPR.G17554 Trifolium pratense HOM05D004118 ORTHO05D004686 1.7e-87 328.2 783 42.7
Migut.M00768 Erythranthe guttata HOM05D004118 ORTHO05D004686 1.4e-86 325.1 815 39.3
Sopen12g005780 Solanum pennellii HOM05D004118 ORTHO05D004686 1.8e-86 324.7 722 40.4
Gohir.D01G046700 Gossypium hirsutum HOM05D004118 ORTHO05D004686 2.4e-86 324.3 710 40.6
Lj3g0023579 Lotus japonicus HOM05D004118 ORTHO05D004686 1.2e-85 322.0 786 41.2
Oeu019296.1 Olea europaea HOM05D004118 ORTHO05D004686 2.0e-85 321.2 742 42.2
MSTRG.12889 Avicennia marina HOM05D004118 ORTHO05D004686 6.5e-84 316.2 755 38.8
ECA236G3195 Erigeron canadensis HOM05D004118 ORTHO05D004686 5.5e-83 313.2 760 36.8
HanXRQChr03g0070941 Helianthus annuus HOM05D004118 ORTHO05D004686 1.6e-82 311.6 753 38.4
Lalb_Chr25g0286181 Lupinus albus HOM05D004118 ORTHO05D004686 1.6e-82 311.6 709 39.9
PSO675G0887 Papaver somniferum HOM05D004118 ORTHO05D004686 1.4e-81 308.5 797 37.5
ECA240G2123 Erigeron canadensis HOM05D004118 ORTHO05D004686 2.6e-80 304.3 757 35.7
Ah.06g194460 Amaranthus hybridus HOM05D004118 ORTHO05D004686 3.3e-80 303.9 754 42.0
Gorai.002G066200 Gossypium raimondii HOM05D004118 ORTHO05D004686 7.5e-80 302.8 671 42.0
Hma1.2p1_0313F.1_g121640 Hydrangea macrophylla HOM05D004118 ORTHO05D004686 9.7e-80 302.4 693 44.6
AL3G27450 Arabidopsis lyrata HOM05D004118 ORTHO05D004686 2.4e-78 297.7 784 36.5
Lsat_1_v5_gn_7_103661 Lactuca sativa HOM05D004118 ORTHO05D004686 2.4e-78 297.7 729 41.6
CSS0030924 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 5.3e-78 296.6 713 40.8
Lsat_1_v5_gn_5_128820 Lactuca sativa HOM05D004118 ORTHO05D004686 5.3e-78 296.6 732 36.9
PSO478G3864 Papaver somniferum HOM05D004118 ORTHO05D004686 2.0e-77 294.7 819 34.6
arahy.Tifrunner.gnm1.ann1.YMW7LF Arachis hypogaea HOM05D004118 ORTHO05D004686 3.8e-76 290.4 719 38.1
MBI07_g32544_MAGBIO Magnolia biondii HOM05D004118 ORTHO05D004686 5.0e-76 290.0 817 39.7
Rhsim04G0023200 Rhododendron simsii HOM05D004118 ORTHO05D004686 7.2e-75 286.2 737 36.8
PSO017G1325 Papaver somniferum HOM05D004118 ORTHO05D004686 2.1e-74 284.6 830 34.5
Sed0016267 Sechium edule HOM05D004118 ORTHO05D004686 5.2e-73 280.0 696 42.2
PSO541G0755 Papaver somniferum HOM05D004118 ORTHO05D004686 3.4e-72 277.3 795 36.5
Rhsim06G0203400 Rhododendron simsii HOM05D004118 ORTHO05D004686 7.5e-72 276.2 748 38.9
CARHR090060 Cardamine hirsuta HOM05D004118 ORTHO05D004686 1.1e-70 272.3 774 36.0
AUR62036141 Chenopodium quinoa HOM05D004118 ORTHO05D004686 1.4e-70 271.9 788 38.1
unitig_747.g21581 Utricularia gibba HOM05D004118 ORTHO05D004686 3.1e-70 270.8 820 35.1
Oeu025351.1 Olea europaea HOM05D004118 ORTHO05D004686 7.0e-70 269.6 753 38.6
HanXRQChr10g0302481 Helianthus annuus HOM05D004118 ORTHO05D004686 5.9e-69 266.5 724 39.8
Aqoxy4G00578 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 1.2e-66 258.8 806 36.1
ECA234G1224 Erigeron canadensis HOM05D004118 ORTHO05D004686 1.6e-66 258.5 724 39.1
unitig_37.g12565 Utricularia gibba HOM05D004118 ORTHO05D004686 6.8e-65 253.1 739 35.0
ATR0602G295 Amborella trichopoda HOM05D004118 ORTHO05D004686 1.2e-64 252.3 784 34.9
Lalb_Chr01g0006651 Lupinus albus HOM05D004118 ORTHO05D004686 9.8e-64 249.2 723 34.6
BcaB04g20948 Brassica carinata HOM05D004118 ORTHO05D004686 7.0e-62 243.0 696 33.5
Ah.04g162010 Amaranthus hybridus HOM05D004118 ORTHO05D004686 3.5e-61 240.7 750 39.1
arahy.Tifrunner.gnm1.ann1.82B0EJ Arachis hypogaea HOM05D004118 ORTHO05D004686 2.0e-56 224.9 623 34.3
C05p52120 Brassica napus HOM05D004118 ORTHO05D004686 1.7e-55 221.9 769 33.8
BolC5t33897H Brassica oleracea HOM05D004118 ORTHO05D004686 1.7e-55 221.9 769 33.8
Zm00001eb395950 Zea mays HOM05D004118 ORTHO05D004686 1.7e-55 221.9 880 34.9
DCAR_019575 Daucus carota HOM05D004118 ORTHO05D004686 2.9e-55 221.1 745 32.8
Zm00001eb014970 Zea mays HOM05D004118 ORTHO05D004686 6.4e-55 219.9 881 33.8
A05p34340 Brassica napus HOM05D004118 ORTHO05D004686 1.1e-54 219.2 775 34.7
BraA05t22255Z Brassica rapa HOM05D004118 ORTHO05D004686 7.0e-54 216.5 773 33.9
BcaB06g29535 Brassica carinata HOM05D004118 ORTHO05D004686 4.6e-53 213.8 775 31.6
Gohir.A08G021600 Gossypium hirsutum HOM05D004118 ORTHO05D004686 2.8e-50 204.5 744 32.5
Gohir.D08G032400 Gossypium hirsutum HOM05D004118 ORTHO05D004686 5.2e-49 200.3 747 32.4
Os06g0352900 Oryza sativa ssp. japonica HOM05D004118 ORTHO05D004686 5.2e-49 200.3 869 35.7
Gorai.004G029800 Gossypium raimondii HOM05D004118 ORTHO05D004686 2.6e-48 198.0 747 32.5
HPP92_002942 Vanilla planifolia HOM05D004118 ORTHO05D004686 3.4e-48 197.6 793 33.4
BcaC09g48474 Brassica carinata HOM05D004118 ORTHO05D004686 9.2e-46 189.5 666 32.3
C01p49420 Brassica napus HOM05D004118 ORTHO05D004686 2.1e-45 188.3 666 31.5
BolC1t04899H Brassica oleracea HOM05D004118 ORTHO05D004686 6.0e-45 186.8 684 32.2
DCAR_017117 Daucus carota HOM05D004118 ORTHO05D004686 3.0e-44 184.5 747 32.7
Gohir.A01G060200 Gossypium hirsutum HOM05D004118 ORTHO05D004686 5.1e-44 183.7 490 37.1
HPP92_003871 Vanilla planifolia HOM05D004118 ORTHO05D004686 8.6e-44 183.0 785 32.6
Lalb_Chr19g0134031 Lupinus albus HOM05D004118 ORTHO05D004686 3.6e-42 177.6 697 32.0
Actinidia14383 Actinidia chinensis HOM05D004118 ORTHO05D004686 4.0e-41 174.1 157 61.8
Lalb_Chr03g0030811 Lupinus albus HOM05D004118 ORTHO05D004686 4.4e-40 170.6 711 33.2
SGA_v2.0_scaffold70G23697 Striga asiatica HOM05D004118 ORTHO05D004686 4.9e-39 167.2 703 32.0
THA.LOC104798758 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 3.2e-38 164.5 600 32.2
PSO675G3813 Papaver somniferum HOM05D004118 ORTHO05D004686 4.1e-38 164.1 353 39.9
HanXRQChr15g0494281 Helianthus annuus HOM05D004118 ORTHO05D004686 2.7e-37 161.4 812 32.1
AT3G15095 Arabidopsis thaliana HOM05D004118 ORTHO05D004686 1.9e-35 155.2 477 33.3
Nn1g06377 Nelumbo nucifera HOM05D004118 ORTHO05D004686 1.9e-35 155.2 267 44.9
GSVIVG01014262001 Vitis vinifera HOM05D004118 ORTHO05D003395 5.6e-35 153.7 625 34.4
Lsat_1_v5_gn_4_172920 Lactuca sativa HOM05D004118 ORTHO05D004686 2.1e-34 151.8 225 49.3
Atru.chr2.2381 Acer truncatum HOM05D004118 ORTHO05D004686 8.9e-33 146.4 154 55.2
Solyc12g014040.1 Solanum lycopersicum HOM05D004118 ORTHO05D004686 7.6e-32 143.3 262 40.5
SEGI_08873 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 1.7e-31 142.1 711 31.8
HPP92_003895 Vanilla planifolia HOM05D004118 ORTHO05D004686 2.2e-31 141.7 430 33.5
Atru.chr2.2380 Acer truncatum HOM05D004118 ORTHO05D004686 1.4e-30 139.0 288 37.8
SGA_v2.0_scaffold130G34343 Striga asiatica HOM05D004118 ORTHO05D004686 5.4e-30 137.1 730 29.9
Cc04_g12070 Coffea canephora HOM05D004118 ORTHO05D004686 3.9e-28 131.0 130 56.9
HanXRQChr12g0372791 Helianthus annuus HOM05D004118 ORTHO05D004686 1.6e-26 125.6 170 44.7
AUR62019494 Chenopodium quinoa HOM05D004118 ORTHO05D004686 2.8e-26 124.8 516 33.7
Lsat_1_v5_gn_1_36460 Lactuca sativa HOM05D004118 ORTHO05D004686 6.2e-26 123.6 171 50.9
CAN.G329.5 Capsicum annuum HOM05D004118 ORTHO05D004686 2.0e-24 118.6 249 39.8
Lj1P837T15 Lonicera japonica HOM05D004118 ORTHO05D004686 1.1e-19 102.8 123 60.2
Actinidia33372 Actinidia chinensis HOM05D004118 ORTHO05D004686 2.8e-18 98.2 137 53.3
CDE10G0292 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 3.1e-17 94.7 697 26.5
HPP92_003896 Vanilla planifolia HOM05D004118 ORTHO05D004686 3.1e-17 94.7 155 38.7
Cfa006262 Carpinus fangiana HOM05D000001 ORTHO05D000003 6.9e-17 93.6 107 50.5
TPR.G17527 Trifolium pratense HOM05D004118 ORTHO05D004686 1.0e-12 79.7 50 78.0
CDE10G0599 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 3.3e-11 74.7 264 27.7
SEGI_02629 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 5.6e-11 73.9 374 26.5
Lsat_1_v5_gn_5_162921 Lactuca sativa HOM05D004118 ORTHO05D004686 2.0e-08 65.5 77 59.7
Nn2g10698 Nelumbo nucifera HOM05D004499 ORTHO05D004928 4.9e-07 60.8 311 27.7
SEGI_41423 Sequoiadendron giganteum HOM05D003923 ORTHO05D004553 4.9e-07 60.8 325 27.7


User provided reference genes

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