Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G0445 Fragaria x ananassa HOM05D004920 ORTHO05D005998 1.2e-158 563.1 282 100.0
FAN25G0865 Fragaria x ananassa HOM05D004920 ORTHO05D005998 3.4e-110 402.1 314 71.7
FvH4_3g08250 Fragaria vesca HOM05D004920 ORTHO05D005998 2.0e-102 376.3 282 74.5
FAN11G1044 Fragaria x ananassa HOM05D004920 ORTHO05D005998 2.0e-102 376.3 282 74.5
FAN16G1146 Fragaria x ananassa HOM05D004920 ORTHO05D005998 2.0e-102 376.3 282 74.5
FAN03G1929 Fragaria x ananassa HOM05D004920 ORTHO05D005998 3.7e-96 355.5 282 71.3
FvH4_7g02080 Fragaria vesca HOM05D004920 ORTHO05D005998 4.8e-96 355.1 282 70.6
FAN06G4868 Fragaria x ananassa HOM05D004920 ORTHO05D005998 4.8e-96 355.1 282 70.6
RcHm_v2.0_Chr5g0009901 Rosa chinensis HOM05D004920 ORTHO05D005998 2.5e-92 342.8 287 68.6
MD10G1285300 Malus domestica HOM05D004920 ORTHO05D005998 1.1e-76 290.8 284 58.1
MD05G1306300 Malus domestica HOM05D004920 ORTHO05D005998 1.6e-75 287.0 287 57.8
Dinv40630 Davidia involucrata HOM05D004920 ORTHO05D005998 2.0e-70 270.0 286 54.5
Sed0019770 Sechium edule HOM05D004920 ORTHO05D005998 1.4e-66 257.3 285 52.6
Hma1.2p1_0155F.1_g068520 Hydrangea macrophylla HOM05D004920 ORTHO05D005998 2.3e-66 256.5 282 52.8
Cfa000557 Carpinus fangiana HOM05D004920 ORTHO05D005998 1.2e-65 254.2 281 52.3
TAR624G0520 Trochodendron aralioides HOM05D004920 ORTHO05D005998 1.5e-65 253.8 281 52.0
Haze_06318 Corylus avellana HOM05D004920 ORTHO05D005998 3.4e-65 252.7 281 52.0
CANSAT35G1037 Cannabis sativa HOM05D004920 ORTHO05D005998 7.5e-65 251.5 290 51.0
CiPaw.09G066500 Carya illinoinensis HOM05D004920 ORTHO05D005998 9.8e-65 251.1 291 50.9
GSVIVG01021153001 Vitis vinifera HOM05D004920 ORTHO05D005998 1.7e-64 250.4 280 53.2
Thecc.06G177000 Theobroma cacao HOM05D004920 ORTHO05D005998 3.7e-64 249.2 266 52.3
CsaV3_6G050600 Cucumis sativus L. HOM05D004920 ORTHO05D005998 8.3e-64 248.1 272 51.5
Duzib235G1063 Durio zibethinus HOM05D004920 ORTHO05D005998 1.1e-63 247.7 288 51.0
Dinv36435 Davidia involucrata HOM05D004920 ORTHO05D005998 1.4e-63 247.3 274 52.6
Actinidia07625 Actinidia chinensis HOM05D004920 ORTHO05D005998 1.9e-63 246.9 281 50.2
Oeu043091.1 Olea europaea HOM05D004920 ORTHO05D005998 1.9e-63 246.9 279 49.5
Lj4g0024893 Lotus japonicus HOM05D004920 ORTHO05D005998 1.6e-62 243.8 231 57.6
Glyma.12G114600 Glycine max HOM05D004920 ORTHO05D005998 2.7e-62 243.0 261 52.1
TWI38G1999 Tripterygium wilfordii HOM05D004920 ORTHO05D005998 2.7e-62 243.0 271 49.8
Eucgr.D00572 Eucalyptus grandis HOM05D004920 ORTHO05D005998 6.0e-62 241.9 289 49.5
SGA_v2.0_scaffold16G07660 Striga asiatica HOM05D004920 ORTHO05D005998 7.8e-62 241.5 245 55.5
ClCG01G023480 Citrullus lanatus HOM05D004920 ORTHO05D005998 1.0e-61 241.1 271 50.6
Manes.17G051900 Manihot esculenta HOM05D004920 ORTHO05D005998 1.7e-61 240.4 276 50.4
Gohir.D05G160000 Gossypium hirsutum HOM05D004920 ORTHO05D005998 2.3e-61 240.0 246 54.5
Gohir.A05G157100 Gossypium hirsutum HOM05D004920 ORTHO05D005998 3.0e-61 239.6 245 54.3
Gohir.D01G045600 Gossypium hirsutum HOM05D004920 ORTHO05D005998 3.0e-61 239.6 251 53.4
Nitab4.5_0000138g0010 Nicotiana tabacum HOM05D004920 ORTHO05D005998 3.9e-61 239.2 281 48.0
Oeu025561.1 Olea europaea HOM05D004920 ORTHO05D005998 6.6e-61 238.4 283 48.1
Ah.05g178940 Amaranthus hybridus HOM05D004920 ORTHO05D005998 1.1e-60 237.7 256 52.0
PSO063G1259 Papaver somniferum HOM05D004920 ORTHO05D005998 1.1e-60 237.7 282 48.6
Ca_10660_v3 Cicer arietinum L. HOM05D004920 ORTHO05D005998 1.5e-60 237.3 278 50.7
Cc02_g14330 Coffea canephora HOM05D004920 ORTHO05D005998 1.5e-60 237.3 245 53.9
PGR004G0415 Punica granatum HOM05D004920 ORTHO05D005998 1.5e-60 237.3 262 51.5
PGR046G0004 Punica granatum HOM05D004920 ORTHO05D005998 1.5e-60 237.3 262 51.5
TPR.G17014 Trifolium pratense HOM05D004920 ORTHO05D005998 1.5e-60 237.3 281 50.2
Potri.004G052200 Populus trichocarpa HOM05D004920 ORTHO05D005998 4.3e-60 235.7 278 48.6
VMungo1127G0753 Vigna mungo HOM05D004920 ORTHO05D005998 4.3e-60 235.7 231 54.5
Gorai.002G065200 Gossypium raimondii HOM05D004920 ORTHO05D005998 5.6e-60 235.3 286 50.3
Lalb_Chr07g0189681 Lupinus albus HOM05D004920 ORTHO05D005998 5.6e-60 235.3 283 47.3
Nn2g14559 Nelumbo nucifera HOM05D004920 ORTHO05D005998 5.6e-60 235.3 284 50.4
Hund21192 Selenicereus undatus HOM05D004920 ORTHO05D005998 5.6e-60 235.3 282 48.6
DCAR_007975 Daucus carota HOM05D004920 ORTHO05D005998 7.3e-60 235.0 249 52.2
Phvul.001G005700 Phaseolus vulgaris HOM05D004920 ORTHO05D005998 7.3e-60 235.0 231 53.2
Aqoxy1G02218 Aquilegia oxysepala HOM05D004920 ORTHO05D005998 1.2e-59 234.2 278 48.9
BcaC02g07783 Brassica carinata HOM05D004920 ORTHO05D005998 1.2e-59 234.2 281 48.0
A04p26140 Brassica napus HOM05D004920 ORTHO05D005998 1.2e-59 234.2 278 48.6
Rhsim02G0138400 Rhododendron simsii HOM05D004920 ORTHO05D005998 1.6e-59 233.8 281 48.8
Atru.chr10.1743 Acer truncatum HOM05D004920 ORTHO05D005998 3.6e-59 232.6 257 52.5
BcaB02g10610 Brassica carinata HOM05D004920 ORTHO05D005998 3.6e-59 232.6 281 48.4
C04p63520 Brassica napus HOM05D004920 ORTHO05D005998 3.6e-59 232.6 278 48.2
BraA04t18117Z Brassica rapa HOM05D004920 ORTHO05D005998 3.6e-59 232.6 278 48.2
A05p11610 Brassica napus HOM05D004920 ORTHO05D005998 4.7e-59 232.3 277 48.7
BraA05t20108Z Brassica rapa HOM05D004920 ORTHO05D005998 4.7e-59 232.3 277 48.7
C04p15060 Brassica napus HOM05D004920 ORTHO05D005998 6.2e-59 231.9 284 47.2
Thhalv10017133m.g Eutrema salsugineum HOM05D004920 ORTHO05D005998 6.2e-59 231.9 286 46.9
AUR62031127 Chenopodium quinoa HOM05D004920 ORTHO05D005998 1.1e-58 231.1 235 54.5
PSO675G0526 Papaver somniferum HOM05D004920 ORTHO05D005998 1.1e-58 231.1 287 47.7
HPP92_018237 Vanilla planifolia HOM05D004920 ORTHO05D005998 1.4e-58 230.7 289 46.4
Aa31LG9G13860 Aethionema arabicum HOM05D004920 ORTHO05D005998 1.8e-58 230.3 283 45.9
Carub.0004s1568 Capsella rubella HOM05D004920 ORTHO05D005998 1.8e-58 230.3 279 47.3
CAN.G1961.2 Capsicum annuum HOM05D004920 ORTHO05D005998 1.8e-58 230.3 280 47.1
Cpa.g.sc80.25 Carica papaya HOM05D004920 ORTHO05D005998 1.8e-58 230.3 282 48.6
Medtr4g087955 Medicago truncatula HOM05D004920 ORTHO05D005998 1.8e-58 230.3 279 49.1
PSO541G3866 Papaver somniferum HOM05D004920 ORTHO05D005998 1.8e-58 230.3 287 47.0
BolC4t27823H Brassica oleracea HOM05D004920 ORTHO05D005998 2.3e-58 229.9 281 47.3
Peaxi162Scf00367g00049 Petunia axillaris HOM05D004920 ORTHO05D005998 2.3e-58 229.9 246 49.6
Sabra04G0033000 Salix brachista HOM05D004920 ORTHO05D005998 2.3e-58 229.9 278 47.5
BolC4t23082H Brassica oleracea HOM05D004920 ORTHO05D005998 3.1e-58 229.6 284 47.2
AL4G29930 Arabidopsis lyrata HOM05D004920 ORTHO05D005998 5.2e-58 228.8 278 47.1
EL10Ac1g01008 Beta vulgaris HOM05D004920 ORTHO05D005998 5.2e-58 228.8 239 54.4
Sp4g16400 Schrenkiella parvula HOM05D004920 ORTHO05D005998 6.8e-58 228.4 282 47.2
Solyc02g031770.4 Solanum lycopersicum HOM05D004920 ORTHO05D005998 6.8e-58 228.4 279 46.2
HanXRQChr15g0481321 Helianthus annuus HOM05D004920 ORTHO05D005998 8.9e-58 228.0 278 48.2
CARHR128130 Cardamine hirsuta HOM05D004920 ORTHO05D005998 1.2e-57 227.6 239 50.2
Peaxi162Scf00016g00346 Petunia axillaris HOM05D004920 ORTHO05D005998 1.2e-57 227.6 246 49.2
Sed0013972 Sechium edule HOM05D004920 ORTHO05D005998 1.2e-57 227.6 278 46.4
Sopen02g010080 Solanum pennellii HOM05D004920 ORTHO05D005998 1.2e-57 227.6 279 45.9
SGA_v2.0_scaffold341G49353 Striga asiatica HOM05D004920 ORTHO05D005998 1.5e-57 227.3 272 49.6
AT2G34050 Arabidopsis thaliana HOM05D004920 ORTHO05D005998 2.6e-57 226.5 286 46.9
AUR62014920 Chenopodium quinoa HOM05D004920 ORTHO05D005998 2.6e-57 226.5 282 48.6
Rhsim06G0035100 Rhododendron simsii HOM05D004920 ORTHO05D005998 3.4e-57 226.1 281 47.7
Migut.M01075 Erythranthe guttata HOM05D004920 ORTHO05D005998 7.5e-57 224.9 283 47.7
Ciclev10016425m.g Citrus clementina HOM05D004920 ORTHO05D005998 9.8e-57 224.6 281 47.0
vmacro15953 Vaccinium macrocarpon HOM05D004920 ORTHO05D005998 9.8e-57 224.6 325 43.7
MSTRG.14155 Avicennia marina HOM05D004920 ORTHO05D005998 2.2e-56 223.4 275 47.3
MBI07_g06434_MAGBIO Magnolia biondii HOM05D004920 ORTHO05D005998 2.2e-56 223.4 285 46.7
TPR.G16259 Trifolium pratense HOM05D004920 ORTHO05D005998 2.2e-56 223.4 231 51.9
BcaB06g28727 Brassica carinata HOM05D004920 ORTHO05D005998 7.1e-55 218.4 283 45.9
CDE02G3849 Ceratophyllum demersum HOM05D004920 ORTHO05D005998 7.1e-55 218.4 242 50.4
ECA236G4389 Erigeron canadensis HOM05D004920 ORTHO05D005998 7.1e-55 218.4 229 52.4
Sc17g0005830 Simmondsia chinensis HOM05D004920 ORTHO05D005998 7.1e-55 218.4 273 47.3
THA.LOC104812631 Tarenaya hassleriana HOM05D004920 ORTHO05D005998 1.0e-53 214.5 239 49.4
Nitab4.5_0008952g0010 Nicotiana tabacum HOM05D004920 ORTHO05D005998 3.9e-53 212.6 359 39.6
Lsat_1_v5_gn_7_23761 Lactuca sativa HOM05D004920 ORTHO05D005998 2.5e-52 209.9 255 48.2
MELO3C007238.2 Cucumis melo HOM05D004920 ORTHO05D005998 9.5e-52 208.0 278 44.2
Gorai.009G165000 Gossypium raimondii HOM05D004920 ORTHO05D005998 6.2e-51 205.3 248 47.6
Lj7P478G59 Lonicera japonica HOM05D004920 ORTHO05D005998 1.8e-50 203.8 207 53.6
ATR0712G057 Amborella trichopoda HOM05D004920 ORTHO05D005998 8.9e-50 201.4 240 48.8
DCAR_004027 Daucus carota HOM05D004920 ORTHO05D005998 4.4e-49 199.1 285 41.8
Glyma.06G291400 Glycine max HOM05D004920 ORTHO05D005998 2.8e-43 179.9 178 53.4
THA.LOC104814688 Tarenaya hassleriana HOM05D004920 ORTHO05D005998 7.6e-41 171.8 213 44.6
QL04p069154 Quercus lobata HOM05D004920 ORTHO05D005998 2.4e-39 166.8 94 80.9
AagrBONN_evm.TU.Sc2ySwM_228.2942 Anthoceros agrestis HOM05D004920 ORTHO05D005998 5.1e-37 159.1 228 39.5
TAR626G0293 Trochodendron aralioides HOM05D004920 ORTHO05D005998 8.7e-37 158.3 94 75.5
COL.COLO4_31383 Corchorus olitorius HOM05D004920 ORTHO05D005998 1.9e-36 157.1 94 76.6
Ca_26043_v3 Cicer arietinum L. HOM05D004920 ORTHO05D005998 1.3e-35 154.5 94 76.6
Glyma.04G173800 Glycine max HOM05D004920 ORTHO05D005998 6.2e-35 152.1 94 74.5
unitig_60.g25415 Utricularia gibba HOM05D004920 ORTHO05D005998 8.1e-35 151.8 93 75.3
SHI18442 Sapria himalayana HOM05D004920 ORTHO05D005998 1.8e-34 150.6 227 40.1
BcaB06g28732 Brassica carinata HOM05D004920 ORTHO05D005998 2.4e-34 150.2 258 38.8
Mapoly0023s0159 Marchantia polymorpha HOM05D004920 ORTHO05D005998 2.6e-33 146.7 278 33.8
Cpa.g.sc80.22 Carica papaya HOM05D004920 ORTHO05D005998 5.8e-33 145.6 94 72.3
Pp3c14_19140 Physcomitrium patens HOM05D004920 ORTHO05D005998 6.4e-32 142.1 240 35.0
BolC3t14602H Brassica oleracea HOM05D004920 ORTHO05D005998 2.1e-30 137.1 177 42.9
SEGI_15656 Sequoiadendron giganteum HOM05D004920 ORTHO05D005998 2.7e-30 136.7 94 68.1
Prupe.4G056300 Prunus persica HOM05D004920 ORTHO05D005998 1.0e-29 134.8 135 57.0
BcaC01g05809 Brassica carinata HOM05D004920 ORTHO05D005998 2.3e-29 133.7 173 42.2
Cpa.g.sc12.156 Carica papaya HOM05D004920 ORTHO05D005998 2.1e-27 127.1 83 72.3
SMO196G0025 Selaginella moellendorffii HOM05D004920 ORTHO05D005998 4.5e-25 119.4 229 30.6
CBR_g54210 Chara braunii HOM05D004920 ORTHO05D005998 1.8e-21 107.5 94 53.2
Psat4g001400 Pisum sativum HOM05D004920 ORTHO05D005998 1.1e-20 104.8 84 60.7
BcaC04g19340 Brassica carinata HOM05D001872 ORTHO05D005998 9.6e-20 101.7 69 65.2
BcaC05g29287 Brassica carinata HOM05D001911 ORTHO05D001951 9.6e-20 101.7 72 63.9
BcaNung00861 Brassica carinata HOM05D001872 ORTHO05D001859 9.6e-20 101.7 72 63.9
BolC1t01767H Brassica oleracea HOM05D001872 ORTHO05D005998 9.6e-20 101.7 72 63.9
BolC7t45617H Brassica oleracea HOM05D001872 ORTHO05D001859 9.6e-20 101.7 72 63.9
C01p18450 Brassica napus HOM05D001872 ORTHO05D001859 3.7e-19 99.8 71 63.4
CAN.G160.23 Capsicum annuum HOM05D004920 ORTHO05D005998 1.1e-18 98.2 147 40.8
QL04p069158 Quercus lobata HOM05D004920 ORTHO05D005998 4.0e-18 96.3 93 51.6
Medtr1g097870 Medicago truncatula HOM05D004920 ORTHO05D005998 1.5e-17 94.4 94 55.3
Zm00001eb237640 Zea mays HOM05D004920 ORTHO05D005998 1.4e-15 87.8 134 41.8
Duzib192G0917 Durio zibethinus HOM05D004920 ORTHO05D005998 6.7e-13 79.0 80 50.0
Os02g0312700 Oryza sativa ssp. japonica HOM05D004920 ORTHO05D005998 1.5e-12 77.8 72 52.8
Cre10.g437050 Chlamydomonas reinhardtii HOM05D004920 ORTHO05D005998 3.3e-12 76.6 101 36.6
BcaB01g03906 Brassica carinata HOM05D004920 ORTHO05D005998 7.4e-12 75.5 171 31.6
DCAR_032321 Daucus carota HOM05D004920 ORTHO05D005998 1.6e-11 74.3 106 39.6
PRCOL_00005737 Prasinoderma coloniale HOM05D004920 ORTHO05D005998 3.7e-11 73.2 92 40.2
Cpa.g.sc80.20 Carica papaya HOM05D009365 ORTHO05D000952 3.4e-09 66.6 43 67.4
A02p38170 Brassica napus HOM05D011482 ORTHO05D001953 1.0e-08 65.1 44 63.6
BraA02t08794Z Brassica rapa HOM05D001897 ORTHO05D001953 1.0e-08 65.1 44 63.6
SEGI_14350 Sequoiadendron giganteum HOM05D004920 ORTHO05D005998 8.4e-08 62.0 63 42.9
Oeu062327.1 Olea europaea HOM05D004920 ORTHO05D005998 4.2e-07 59.7 39 71.8
BolC5t34235H Brassica oleracea HOM05D001872 ORTHO05D001859 1.6e-06 57.8 101 35.6
Oeu019523.1 Olea europaea HOM05D004920 ORTHO05D005998 3.5e-06 56.6 46 52.2


User provided reference genes

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