Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G0414 Fragaria x ananassa HOM05D007052 ORTHO05D008871 2.0e-55 218.8 106 100.0
RcHm_v2.0_Chr5g0002341 Rosa chinensis HOM05D007052 ORTHO05D008871 1.9e-37 159.1 84 92.9
RcHm_v2.0_Chr7g0236991 Rosa chinensis HOM05D007052 ORTHO05D008871 4.3e-37 157.9 84 90.5
Prupe.4G016000 Prunus persica HOM05D007052 ORTHO05D008871 1.5e-26 122.9 85 71.8
MD10G1325900 Malus domestica HOM05D007052 ORTHO05D008871 4.4e-26 121.3 100 63.0
MD05G1351600 Malus domestica HOM05D007052 ORTHO05D008871 1.1e-24 116.7 100 62.0
QL05p072067 Quercus lobata HOM05D007052 ORTHO05D008871 5.4e-24 114.4 85 71.8
Lj1A1235T90 Lonicera japonica HOM05D007052 ORTHO05D008871 4.6e-23 111.3 84 69.0
Haze_06850 Corylus avellana HOM05D007052 ORTHO05D008871 6.0e-23 110.9 84 69.0
Cfa000169 Carpinus fangiana HOM05D007052 ORTHO05D008871 1.3e-22 109.8 84 67.9
Potri.011G010300 Populus trichocarpa HOM05D007052 ORTHO05D008871 1.5e-21 106.3 85 69.4
Sabra11G0007900 Salix brachista HOM05D007052 ORTHO05D008871 2.5e-21 105.5 85 69.4
VMungo0540G2459 Vigna mungo HOM05D007052 ORTHO05D008871 3.3e-21 105.1 84 65.5
vmacro15801 Vaccinium macrocarpon HOM05D007052 ORTHO05D008871 9.5e-21 103.6 92 66.3
GSVIVG01012660001 Vitis vinifera HOM05D007052 ORTHO05D008871 9.5e-21 103.6 84 66.7
CiPaw.09G097200 Carya illinoinensis HOM05D007052 ORTHO05D008871 1.6e-20 102.8 84 64.3
Rhsim02G0105300 Rhododendron simsii HOM05D007052 ORTHO05D008871 4.7e-20 101.3 96 61.5
MELO3C007415.2 Cucumis melo HOM05D007052 ORTHO05D008871 6.2e-20 100.9 104 56.7
Phvul.006G146300 Phaseolus vulgaris HOM05D007052 ORTHO05D008871 8.1e-20 100.5 84 61.9
Atru.chr10.2273 Acer truncatum HOM05D007052 ORTHO05D008871 2.3e-19 99.0 84 60.7
CsaV3_6G048750 Cucumis sativus L. HOM05D007052 ORTHO05D008871 2.3e-19 99.0 84 63.1
TWI38G1879 Tripterygium wilfordii HOM05D007052 ORTHO05D008871 6.8e-19 97.4 84 66.7
Duzib235G0934 Durio zibethinus HOM05D007052 ORTHO05D008871 2.0e-18 95.9 81 60.5
Sed0006602 Sechium edule HOM05D007052 ORTHO05D008871 4.4e-18 94.7 84 56.0
TAR627G0466 Trochodendron aralioides HOM05D007052 ORTHO05D008871 4.4e-18 94.7 85 65.9
EL10Ac8g20122 Beta vulgaris HOM05D007052 ORTHO05D008871 7.5e-18 94.0 84 60.7
Glyma.15G111400 Glycine max HOM05D007052 ORTHO05D008871 7.5e-18 94.0 85 61.2
Ca_00688_v3 Cicer arietinum L. HOM05D007052 ORTHO05D008871 1.3e-17 93.2 86 59.3
Glyma.09G007000 Glycine max HOM05D007052 ORTHO05D008871 1.7e-17 92.8 80 60.0
Cc09_g01290 Coffea canephora HOM05D007052 ORTHO05D008871 4.9e-17 91.3 81 61.7
Lj6g0012328 Lotus japonicus HOM05D007052 ORTHO05D008871 6.4e-17 90.9 85 60.0
Manes.17G028000 Manihot esculenta HOM05D007052 ORTHO05D008871 8.3e-17 90.5 85 55.3
Lsat_1_v5_gn_1_129560 Lactuca sativa HOM05D007052 ORTHO05D008871 1.9e-16 89.4 84 60.7
Lalb_Chr18g0056571 Lupinus albus HOM05D007052 ORTHO05D008871 2.4e-16 89.0 85 57.6
Aqoxy1G03011 Aquilegia oxysepala HOM05D007052 ORTHO05D008871 3.2e-16 88.6 86 60.5
CANSAT56G3240 Cannabis sativa HOM05D007052 ORTHO05D008871 3.2e-16 88.6 89 53.9
Eucgr.E03993 Eucalyptus grandis HOM05D007052 ORTHO05D008871 3.2e-16 88.6 82 56.1
Gorai.011G012000 Gossypium raimondii HOM05D007052 ORTHO05D008871 3.2e-16 88.6 90 55.6
A09p26390 Brassica napus HOM05D007052 ORTHO05D008871 4.1e-16 88.2 84 60.7
C09p33580 Brassica napus HOM05D007052 ORTHO05D008871 4.1e-16 88.2 84 60.7
BolC9t56192H Brassica oleracea HOM05D007052 ORTHO05D008871 4.1e-16 88.2 84 60.7
BraA09t38213Z Brassica rapa HOM05D007052 ORTHO05D008871 4.1e-16 88.2 84 60.7
Sc05g0009410 Simmondsia chinensis HOM05D007052 ORTHO05D008871 7.1e-16 87.4 70 64.3
Gohir.A10G011300 Gossypium hirsutum HOM05D007052 ORTHO05D008871 9.2e-16 87.0 90 54.4
BcaC04g21282 Brassica carinata HOM05D007052 ORTHO05D008871 1.2e-15 86.7 84 59.5
Carub.0006s3216 Capsella rubella HOM05D007052 ORTHO05D008871 1.6e-15 86.3 84 57.1
Hund21433 Selenicereus undatus HOM05D007052 ORTHO05D008871 1.6e-15 86.3 81 56.8
Medtr2g024300 Medicago truncatula HOM05D007052 ORTHO05D008871 2.7e-15 85.5 86 55.8
PGR042G3505 Punica granatum HOM05D007052 ORTHO05D008871 2.7e-15 85.5 44 84.1
Sp6g04520 Schrenkiella parvula HOM05D007052 ORTHO05D008871 2.7e-15 85.5 84 59.5
BcaB01g01799 Brassica carinata HOM05D007052 ORTHO05D008871 3.5e-15 85.1 84 59.5
Thecc.06G227100 Theobroma cacao HOM05D007052 ORTHO05D008871 4.6e-15 84.7 80 55.0
arahy.Tifrunner.gnm1.ann1.LNF63F Arachis hypogaea HOM05D007052 ORTHO05D008871 7.8e-15 84.0 59 64.4
arahy.Tifrunner.gnm1.ann1.MS5PCD Arachis hypogaea HOM05D007052 ORTHO05D008871 7.8e-15 84.0 59 64.4
Thhalv10029002m.g Eutrema salsugineum HOM05D007052 ORTHO05D008871 7.8e-15 84.0 84 57.1
Psat1g177840 Pisum sativum HOM05D007052 ORTHO05D008871 7.8e-15 84.0 84 53.6
TPR.G13090 Trifolium pratense HOM05D007052 ORTHO05D008871 7.8e-15 84.0 86 55.8
AUR62012751 Chenopodium quinoa HOM05D007052 ORTHO05D008871 1.0e-14 83.6 75 61.3
SalBow8G1921 Salvia bowleyana HOM05D007052 ORTHO05D008871 1.3e-14 83.2 72 55.6
AT4G04330 Arabidopsis thaliana HOM05D007052 ORTHO05D008871 5.1e-14 81.3 84 58.3
CARHR253150 Cardamine hirsuta HOM05D007052 ORTHO05D008871 5.1e-14 81.3 84 54.8
Aa31LG9G9870 Aethionema arabicum HOM05D007052 ORTHO05D008871 8.6e-14 80.5 82 57.3
Dinv20100 Davidia involucrata HOM05D007052 ORTHO05D008871 8.6e-14 80.5 84 56.0
PSO675G2240 Papaver somniferum HOM05D007052 ORTHO05D008871 1.5e-13 79.7 74 59.5
Ciclev10016958m.g Citrus clementina HOM05D007052 ORTHO05D008871 1.9e-13 79.3 83 55.4
HanXRQChr01g0006501 Helianthus annuus HOM05D007052 ORTHO05D008871 1.9e-13 79.3 84 58.3
Migut.M01374 Erythranthe guttata HOM05D007052 ORTHO05D008871 2.5e-13 79.0 85 57.6
PSO541G4001 Papaver somniferum HOM05D007052 ORTHO05D008871 3.3e-13 78.6 77 59.7
Ah.09g234570 Amaranthus hybridus HOM05D007052 ORTHO05D008871 5.6e-13 77.8 68 60.3
THA.LOC104812978 Tarenaya hassleriana HOM05D007052 ORTHO05D008871 3.6e-12 75.1 85 52.9
Gorai.010G183200 Gossypium raimondii HOM05D007052 ORTHO05D008871 4.7e-12 74.7 88 51.1
Nitab4.5_0001409g0190 Nicotiana tabacum HOM05D007052 ORTHO05D008871 6.2e-12 74.3 84 50.0
SGA_v2.0_scaffold7G03781 Striga asiatica HOM05D007052 ORTHO05D008871 1.1e-11 73.6 59 59.3
Gohir.D06G156800 Gossypium hirsutum HOM05D007052 ORTHO05D008871 2.3e-11 72.4 82 52.4
Gohir.A06G150600 Gossypium hirsutum HOM05D007052 ORTHO05D008871 3.1e-11 72.0 82 52.4
Sopen02g025730 Solanum pennellii HOM05D007052 ORTHO05D008871 4.0e-11 71.6 84 52.4
CDE07G0375 Ceratophyllum demersum HOM05D000570 ORTHO05D001174 6.8e-11 70.9 55 61.8
CAN.G1014.43 Capsicum annuum HOM05D007052 ORTHO05D008871 8.9e-11 70.5 84 50.0
ECA248G2484 Erigeron canadensis HOM05D007052 ORTHO05D008871 8.9e-11 70.5 50 72.0
Actinidia11870 Actinidia chinensis HOM05D007052 ORTHO05D008871 1.5e-10 69.7 36 86.1
PGSC0003DMG400016462 Solanum tuberosum HOM05D007052 ORTHO05D008871 2.6e-10 68.9 84 50.0
AL6G47870 Arabidopsis lyrata HOM05D007052 ORTHO05D008871 4.4e-10 68.2 36 88.9
BcaC04g21271 Brassica carinata HOM05D004489 ORTHO05D039740 7.6e-10 67.4 51 68.6
Hund23440 Selenicereus undatus HOM05D007052 ORTHO05D008871 7.6e-10 67.4 36 83.3
ClCG01G021710 Citrullus lanatus HOM05D007052 ORTHO05D008871 1.3e-09 66.6 52 69.2
DCAR_024989 Daucus carota HOM05D007052 ORTHO05D008871 1.3e-09 66.6 36 83.3
Os08g0425200 Oryza sativa ssp. japonica HOM05D007052 ORTHO05D008871 1.7e-09 66.2 62 54.8
Pp3c25_6660 Physcomitrium patens HOM05D007052 ORTHO05D008871 2.9e-09 65.5 37 81.1
ATR0624G054 Amborella trichopoda HOM05D007052 ORTHO05D008871 3.8e-09 65.1 55 60.0
Zm00001eb179210 Zea mays HOM05D007052 ORTHO05D008871 2.4e-08 62.4 39 74.4
CSS0050367 Camellia sinensis var. sinensis HOM05D007052 ORTHO05D008871 7.1e-08 60.8 41 68.3
AagrBONN_evm.TU.Sc2ySwM_117.3173 Anthoceros agrestis HOM05D007052 ORTHO05D008871 7.8e-07 57.4 36 69.4


User provided reference genes

Program Settings