Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G0330 Fragaria x ananassa HOM05D007535 ORTHO05D008520 2.5e-190 669.1 475 100.0
FvH4_3g25730 Fragaria vesca HOM05D007535 ORTHO05D008520 1.7e-146 523.5 474 87.1
FAN25G3072 Fragaria x ananassa HOM05D007535 ORTHO05D008520 9.5e-145 517.7 472 86.7
FAN11G3206 Fragaria x ananassa HOM05D007535 ORTHO05D008520 1.7e-141 506.9 474 85.7
RcHm_v2.0_Chr5g0046091 Rosa chinensis HOM05D007535 ORTHO05D008520 7.1e-124 448.4 474 78.3
FAN16G1906 Fragaria x ananassa HOM05D007535 ORTHO05D008520 3.0e-106 389.8 262 85.5
FAN25G1573 Fragaria x ananassa HOM05D007535 ORTHO05D008520 3.0e-74 283.5 437 69.3
Prupe.6G137100 Prunus persica HOM05D007535 ORTHO05D008520 1.7e-69 267.7 496 59.7
MD03G1150100 Malus domestica HOM05D007535 ORTHO05D008520 1.5e-52 211.5 493 54.8
Thecc.09G278200 Theobroma cacao HOM05D007535 ORTHO05D008520 7.0e-39 166.0 499 38.7
PSO384G1635 Papaver somniferum HOM05D007535 ORTHO05D008520 8.6e-37 159.1 478 45.4
Gorai.004G011300 Gossypium raimondii HOM05D007535 ORTHO05D008520 7.2e-36 156.0 492 44.9
Rhsim13G0113500 Rhododendron simsii HOM05D000001 ORTHO05D000003 2.8e-35 154.1 526 37.6
Lj2A969T70 Lonicera japonica HOM05D007535 ORTHO05D008520 1.0e-34 152.1 366 47.8
Gohir.A08G006800 Gossypium hirsutum HOM05D007535 ORTHO05D008520 1.4e-34 151.8 496 43.1
Gohir.D08G017000 Gossypium hirsutum HOM05D007535 ORTHO05D008520 3.0e-34 150.6 486 43.6
Glyma.12G186700 Glycine max HOM05D007535 ORTHO05D008520 2.6e-33 147.5 479 47.2
Medtr2g086950 Medicago truncatula HOM05D007535 ORTHO05D008520 2.8e-32 144.1 492 46.7
Psat5g257880 Pisum sativum HOM05D007535 ORTHO05D008520 1.1e-31 142.1 489 41.7
Ca_01647_v3 Cicer arietinum L. HOM05D002184 ORTHO05D002379 7.0e-31 139.4 499 48.7
vmacro03328 Vaccinium macrocarpon HOM05D007535 ORTHO05D008520 1.6e-30 138.3 498 37.6
Cfa009985 Carpinus fangiana HOM05D007535 ORTHO05D008520 2.7e-30 137.5 477 47.8
SGA_v2.0_scaffold177G39436 Striga asiatica HOM05D007535 ORTHO05D008520 1.3e-29 135.2 495 43.6
Nitab4.5_0000731g0020 Nicotiana tabacum HOM05D007535 ORTHO05D008520 2.3e-29 134.4 473 46.9
Glyma.13G314800 Glycine max HOM05D007535 ORTHO05D008520 2.9e-29 134.0 482 49.0
Ciclev10028368m.g Citrus clementina HOM05D007535 ORTHO05D008520 8.6e-29 132.5 494 47.4
Hma1.2p1_2164F.1_g315730 Hydrangea macrophylla HOM05D007535 ORTHO05D008520 1.1e-28 132.1 281 37.7
Hma1.2p1_2164F.1_g315740 Hydrangea macrophylla HOM05D007535 ORTHO05D008520 1.1e-28 132.1 281 37.7
PSO339G0294 Papaver somniferum HOM05D007535 ORTHO05D008520 1.5e-28 131.7 480 42.5
Nitab4.5_0008177g0030 Nicotiana tabacum HOM05D007535 ORTHO05D008520 1.9e-28 131.3 478 44.8
GSVIVG01036079001 Vitis vinifera HOM05D007535 ORTHO05D008520 3.3e-28 130.6 481 47.2
CANSAT54G2250 Cannabis sativa HOM05D007535 ORTHO05D008520 4.3e-28 130.2 480 50.0
Peaxi162Scf00224g00216 Petunia axillaris HOM05D007535 ORTHO05D008520 4.3e-28 130.2 504 44.6
PGSC0003DMG400026347 Solanum tuberosum HOM05D007535 ORTHO05D008520 5.6e-28 129.8 515 44.9
Manes.04G001100 Manihot esculenta HOM05D007535 ORTHO05D008520 9.5e-28 129.0 500 40.6
VMungo1080G1542 Vigna mungo HOM05D007535 ORTHO05D008520 9.5e-28 129.0 510 41.8
QL01p011831 Quercus lobata HOM05D007535 ORTHO05D008520 1.6e-27 128.3 347 35.2
Atru.chr3.3166 Acer truncatum HOM05D007535 ORTHO05D008520 2.1e-27 127.9 268 37.3
Aqoxy4G02717 Aquilegia oxysepala HOM05D007535 ORTHO05D008520 2.8e-27 127.5 494 35.0
Solyc11g068690.2 Solanum lycopersicum HOM05D007535 ORTHO05D008520 6.1e-27 126.3 535 41.1
Sopen11g027410 Solanum pennellii HOM05D007535 ORTHO05D008520 2.3e-26 124.4 518 42.5
TAR633G1755 Trochodendron aralioides HOM05D007535 ORTHO05D008520 4.0e-26 123.6 480 46.7
Haze_23344 Corylus avellana HOM05D007535 ORTHO05D008520 6.8e-26 122.9 262 38.2
MELO3C025588.2 Cucumis melo HOM05D007535 ORTHO05D008520 8.9e-26 122.5 538 29.0
Lj3g0000707 Lotus japonicus HOM05D007535 ORTHO05D008520 8.9e-26 122.5 485 40.2
Sed0017293 Sechium edule HOM05D007535 ORTHO05D008520 1.2e-25 122.1 481 44.7
Actinidia07260 Actinidia chinensis HOM05D007535 ORTHO05D008520 2.0e-25 121.3 296 34.8
TPR.G4567 Trifolium pratense HOM05D007535 ORTHO05D008520 2.0e-25 121.3 481 46.2
ClCG01G011770 Citrullus lanatus HOM05D007535 ORTHO05D008520 2.6e-25 120.9 487 42.5
TWI79G0866 Tripterygium wilfordii HOM05D007535 ORTHO05D008520 2.6e-25 120.9 495 45.3
Nn6g34805 Nelumbo nucifera HOM05D007535 ORTHO05D008520 5.8e-25 119.8 269 37.9
Lalb_Chr24g0393491 Lupinus albus HOM05D007535 ORTHO05D008520 9.8e-25 119.0 267 36.3
CiPaw.14G097800 Carya illinoinensis HOM05D007535 ORTHO05D008520 1.7e-24 118.2 249 39.8
Dinv08923 Davidia involucrata HOM05D007535 ORTHO05D008520 1.7e-24 118.2 483 37.9
CSS0035480 Camellia sinensis var. sinensis HOM05D007535 ORTHO05D008520 3.7e-24 117.1 304 34.9
Ciclev10029981m.g Citrus clementina HOM05D007535 ORTHO05D008520 3.7e-24 117.1 510 35.1
Sabra04G0134300 Salix brachista HOM05D001716 ORTHO05D004234 3.7e-24 117.1 505 34.9
Cpa.g.sc195.29 Carica papaya HOM05D007535 ORTHO05D008520 4.9e-24 116.7 271 35.4
arahy.Tifrunner.gnm1.ann1.ETK20Z Arachis hypogaea HOM05D007535 ORTHO05D008520 6.4e-24 116.3 484 47.1
CAN.G745.17 Capsicum annuum HOM05D007535 ORTHO05D008520 2.4e-23 114.4 495 42.8
MD11G1168900 Malus domestica HOM05D007535 ORTHO05D008520 4.6e-22 110.2 163 63.2
Actinidia24230 Actinidia chinensis HOM05D007535 ORTHO05D008520 3.0e-21 107.5 160 40.0
Duzib150G0908 Durio zibethinus HOM05D007535 ORTHO05D008520 3.0e-21 107.5 152 44.1
Potri.004G199200 Populus trichocarpa HOM05D007535 ORTHO05D008520 3.0e-21 107.5 490 44.9
Cc00_g20950 Coffea canephora HOM05D007535 ORTHO05D008520 5.0e-21 106.7 479 45.9
Migut.N02473 Erythranthe guttata HOM05D007535 ORTHO05D008520 5.0e-21 106.7 478 44.4
arahy.Tifrunner.gnm1.ann1.TGP3GH Arachis hypogaea HOM05D007535 ORTHO05D008520 1.6e-19 101.7 499 36.1
HanXRQChr14g0433121 Helianthus annuus HOM05D007535 ORTHO05D008520 2.1e-19 101.3 409 48.2
Ciclev10028316m.g Citrus clementina HOM05D007535 ORTHO05D008520 2.3e-18 97.8 494 44.5
DCAR_024892 Daucus carota HOM05D007535 ORTHO05D008520 2.3e-18 97.8 509 34.2
Hund18777 Selenicereus undatus HOM05D007535 ORTHO05D008520 2.3e-18 97.8 499 33.9
Sc12g0004620 Simmondsia chinensis HOM05D007535 ORTHO05D008520 2.3e-18 97.8 480 31.9
Eucgr.J00525 Eucalyptus grandis HOM05D007535 ORTHO05D008520 6.8e-18 96.3 480 41.2
PGR119G1786 Punica granatum HOM05D007535 ORTHO05D008520 1.5e-17 95.1 273 33.0
THA.LOC104810927 Tarenaya hassleriana HOM05D007535 ORTHO05D008520 2.6e-17 94.4 475 42.5
Lsat_1_v5_gn_2_34620 Lactuca sativa HOM05D007535 ORTHO05D008520 5.8e-17 93.2 361 41.6
MBI17_g01489_MAGBIO Magnolia biondii HOM05D007535 ORTHO05D008520 7.5e-17 92.8 340 42.4
CsaV3_1G015090 Cucumis sativus L. HOM05D007535 ORTHO05D008520 1.3e-16 92.0 495 41.4
EL10Ac7g16124 Beta vulgaris HOM05D007535 ORTHO05D008520 3.7e-16 90.5 486 28.8
SalBow3G0383 Salvia bowleyana HOM05D007535 ORTHO05D008520 1.9e-15 88.2 497 44.3
ECA238G4833 Erigeron canadensis HOM05D007535 ORTHO05D008520 3.2e-15 87.4 345 35.9
Sc12g0004670 Simmondsia chinensis HOM05D007535 ORTHO05D008520 4.1e-15 87.0 481 34.1
unitig_27.g25117 Utricularia gibba HOM05D007535 ORTHO05D008520 5.4e-15 86.7 481 40.3
CDE02G4009 Ceratophyllum demersum HOM05D007535 ORTHO05D008520 1.2e-14 85.5 483 35.8
MSTRG.12377 Avicennia marina HOM05D007535 ORTHO05D008520 1.0e-13 82.4 507 43.2
AUR62001527 Chenopodium quinoa HOM05D007535 ORTHO05D008520 3.9e-13 80.5 300 30.3
Phvul.005G122000 Phaseolus vulgaris HOM05D007535 ORTHO05D008520 1.5e-12 78.6 485 42.3
Oeu024409.1 Olea europaea HOM05D007535 ORTHO05D008520 1.9e-12 78.2 56 69.6
HPP92_011495 Vanilla planifolia HOM05D007535 ORTHO05D008520 2.1e-11 74.7 263 31.6
Aa31LG1G13230 Aethionema arabicum HOM05D012474 ORTHO05D008520 3.6e-11 73.9 267 30.0
BcaB08g36440 Brassica carinata HOM05D012474 ORTHO05D008520 1.8e-10 71.6 276 29.0
Os01g0966400 Oryza sativa ssp. japonica HOM05D007535 ORTHO05D008520 6.8e-10 69.7 278 30.9
Thhalv10013516m.g Eutrema salsugineum HOM05D012474 ORTHO05D008520 1.2e-09 68.9 79 50.6
Zm00001eb140080 Zea mays HOM05D007535 ORTHO05D008520 2.0e-09 68.2 513 42.1
Sp6g22920 Schrenkiella parvula HOM05D012474 ORTHO05D008520 7.5e-09 66.2 269 30.9
BcaC04g19565 Brassica carinata HOM05D012474 ORTHO05D008520 2.9e-08 64.3 75 45.3
Carub.0006s2006 Capsella rubella HOM05D012474 ORTHO05D008520 2.9e-08 64.3 270 27.4
Hma1.2p1_2164F.1_g315720 Hydrangea macrophylla HOM05D007535 ORTHO05D008520 4.9e-08 63.5 53 58.5
BraA10t43930Z Brassica rapa HOM05D012474 ORTHO05D008520 2.4e-07 61.2 272 26.8
C09p54250 Brassica napus HOM05D012474 ORTHO05D008520 1.2e-06 58.9 267 26.2
A10p18500 Brassica napus HOM05D012474 ORTHO05D008520 1.6e-06 58.5 269 27.9
CARHR191220 Cardamine hirsuta HOM05D012474 ORTHO05D008520 2.1e-06 58.2 273 28.6
CSS0011293 Camellia sinensis var. sinensis HOM05D007535 ORTHO05D008520 6.0e-06 56.6 42 66.7


User provided reference genes

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