Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G0246 Fragaria x ananassa HOM05D007312 ORTHO05D009209 3.1e-71 271.9 165 100.0
FAN25G0614 Fragaria x ananassa HOM05D007312 ORTHO05D009209 2.2e-40 169.5 151 76.8
Gorai.008G048300 Gossypium raimondii HOM05D007312 ORTHO05D009209 1.5e-28 130.2 143 57.3
Gohir.D12G045700 Gossypium hirsutum HOM05D007312 ORTHO05D009209 1.3e-27 127.1 143 56.6
Thecc.02G008700 Theobroma cacao HOM05D007312 ORTHO05D009209 1.1e-26 124.0 139 59.0
FvH4_3g12430 Fragaria vesca HOM05D007312 ORTHO05D009209 4.5e-25 118.6 84 95.2
RcHm_v2.0_Chr5g0020311 Rosa chinensis HOM05D007312 ORTHO05D009209 5.8e-25 118.2 84 94.0
FAN16G3369 Fragaria x ananassa HOM05D007312 ORTHO05D009209 1.7e-24 116.7 81 98.8
Prupe.4G113200 Prunus persica HOM05D007312 ORTHO05D009209 6.4e-24 114.8 102 60.8
MD05G1250400 Malus domestica HOM05D007312 ORTHO05D009209 6.0e-22 108.2 84 69.0
COL.COLO4_17652 Corchorus olitorius HOM05D007312 ORTHO05D009209 3.0e-21 105.9 133 52.6
TPR.G38271 Trifolium pratense HOM05D007312 ORTHO05D009209 5.6e-20 101.7 84 65.5
Phvul.002G097300 Phaseolus vulgaris HOM05D007312 ORTHO05D009209 1.3e-19 100.5 84 75.0
Glyma.20G019100 Glycine max HOM05D007312 ORTHO05D009209 1.6e-19 100.1 84 84.5
VMungo0251G1106 Vigna mungo HOM05D007312 ORTHO05D009209 1.6e-19 100.1 84 76.2
Lj4g0021225 Lotus japonicus HOM05D007312 ORTHO05D009209 2.8e-19 99.4 84 83.3
TWI63G0684 Tripterygium wilfordii HOM05D007312 ORTHO05D009209 3.6e-19 99.0 84 63.1
Medtr4g084180 Medicago truncatula HOM05D007312 ORTHO05D009209 8.1e-19 97.8 84 64.3
Oeu056034.1 Olea europaea HOM05D007312 ORTHO05D009209 1.4e-18 97.1 84 63.1
Ca_18754_v3 Cicer arietinum L. HOM05D007312 ORTHO05D009209 1.8e-18 96.7 84 65.5
Dinv25919 Davidia involucrata HOM05D007312 ORTHO05D009209 5.3e-18 95.1 99 54.5
SalBow8G4543 Salvia bowleyana HOM05D007312 ORTHO05D009209 9.0e-18 94.4 84 60.7
Psat7g129800 Pisum sativum HOM05D007312 ORTHO05D009209 1.2e-17 94.0 84 61.9
arahy.Tifrunner.gnm1.ann1.XDA00H Arachis hypogaea HOM05D007312 ORTHO05D009209 2.0e-17 93.2 85 81.2
QL11p016282 Quercus lobata HOM05D007312 ORTHO05D009209 2.0e-17 93.2 84 59.5
Solyc02g068710.3 Solanum lycopersicum HOM05D007312 ORTHO05D009209 2.6e-17 92.8 86 61.6
Sopen02g017880 Solanum pennellii HOM05D007312 ORTHO05D009209 2.6e-17 92.8 86 61.6
PGSC0003DMG400010438 Solanum tuberosum HOM05D007312 ORTHO05D009209 2.6e-17 92.8 86 61.6
Haze_06075 Corylus avellana HOM05D007312 ORTHO05D009209 3.4e-17 92.4 83 60.2
Eucgr.E04250 Eucalyptus grandis HOM05D007312 ORTHO05D009209 3.4e-17 92.4 90 56.7
Hma1.2p1_1005F.1_g246920 Hydrangea macrophylla HOM05D007312 ORTHO05D009209 3.4e-17 92.4 86 58.1
Lalb_Chr16g0385171 Lupinus albus HOM05D007312 ORTHO05D009209 3.4e-17 92.4 86 80.2
Nitab4.5_0007745g0050 Nicotiana tabacum HOM05D007312 ORTHO05D009209 9.9e-17 90.9 86 60.5
CiPaw.09G076400 Carya illinoinensis HOM05D007312 ORTHO05D009209 1.3e-16 90.5 84 58.3
Cc09_g06000 Coffea canephora HOM05D007312 ORTHO05D009209 1.7e-16 90.1 84 58.3
CSS0025621 Camellia sinensis var. sinensis HOM05D007312 ORTHO05D009209 2.9e-16 89.4 84 61.9
Duzib052G0161 Durio zibethinus HOM05D007312 ORTHO05D009209 2.9e-16 89.4 87 60.9
Sc01g0008940 Simmondsia chinensis HOM05D007312 ORTHO05D009209 2.9e-16 89.4 84 58.3
MSTRG.7597 Avicennia marina HOM05D007312 ORTHO05D009209 3.8e-16 89.0 84 59.5
Cpa.g.sc5085.1 Carica papaya HOM05D007312 ORTHO05D009209 3.8e-16 89.0 81 61.7
ECA234G3951 Erigeron canadensis HOM05D007312 ORTHO05D009209 3.8e-16 89.0 86 57.0
Potri.012G124500 Populus trichocarpa HOM05D007312 ORTHO05D009209 3.8e-16 89.0 85 58.8
PGR042G3076 Punica granatum HOM05D007312 ORTHO05D009209 6.4e-16 88.2 84 58.3
Nitab4.5_0001288g0230 Nicotiana tabacum HOM05D007312 ORTHO05D009209 8.4e-16 87.8 86 60.5
RcHm_v2.0_Chr2g0126261 Rosa chinensis HOM05D007312 ORTHO05D009209 8.4e-16 87.8 45 97.8
HanXRQChr12g0381571 Helianthus annuus HOM05D007312 ORTHO05D009209 1.1e-15 87.4 85 54.1
Manes.16G055800 Manihot esculenta HOM05D007312 ORTHO05D009209 1.1e-15 87.4 85 56.5
Hund14701 Selenicereus undatus HOM05D007312 ORTHO05D009209 1.4e-15 87.0 84 56.0
Atru.chr10.560 Acer truncatum HOM05D007312 ORTHO05D009209 1.9e-15 86.7 84 54.8
Ah.01g020500 Amaranthus hybridus HOM05D007312 ORTHO05D009209 1.9e-15 86.7 84 58.3
Peaxi162Scf00149g00224 Petunia axillaris HOM05D007312 ORTHO05D009209 1.9e-15 86.7 86 58.1
CANSAT35G0781 Cannabis sativa HOM05D007312 ORTHO05D009209 2.4e-15 86.3 84 54.8
ATR0752G167 Amborella trichopoda HOM05D007312 ORTHO05D009209 3.2e-15 85.9 110 49.1
Sabra12G0094300 Salix brachista HOM05D007312 ORTHO05D009209 3.2e-15 85.9 85 57.6
GSVIVG01012104001 Vitis vinifera HOM05D007312 ORTHO05D009209 4.2e-15 85.5 84 54.8
AL1G49340 Arabidopsis lyrata HOM05D007312 ORTHO05D009209 5.5e-15 85.1 84 54.8
Gohir.A12G046700 Gossypium hirsutum HOM05D007312 ORTHO05D009209 5.5e-15 85.1 85 56.5
Lj2A350T56 Lonicera japonica HOM05D007312 ORTHO05D009209 9.3e-15 84.3 86 54.7
AUR62010557 Chenopodium quinoa HOM05D007312 ORTHO05D009209 1.2e-14 84.0 84 54.8
Thhalv10009117m.g Eutrema salsugineum HOM05D007312 ORTHO05D009209 1.2e-14 84.0 84 53.6
Sed0015339 Sechium edule HOM05D007312 ORTHO05D009209 1.2e-14 84.0 85 64.7
AT1G31170 Arabidopsis thaliana HOM05D007312 ORTHO05D009209 1.6e-14 83.6 84 53.6
EL10Ac5g12681 Beta vulgaris HOM05D007312 ORTHO05D009209 1.6e-14 83.6 84 56.0
CARHR030640 Cardamine hirsuta HOM05D007312 ORTHO05D009209 2.7e-14 82.8 84 52.4
BcaB04g18176 Brassica carinata HOM05D007312 ORTHO05D009209 3.5e-14 82.4 85 55.3
Ciclev10017175m.g Citrus clementina HOM05D007312 ORTHO05D009209 3.5e-14 82.4 88 54.5
TAR624G0630 Trochodendron aralioides HOM05D007312 ORTHO05D009209 4.6e-14 82.0 84 51.2
ClCG01G009570 Citrullus lanatus HOM05D007312 ORTHO05D009209 6.0e-14 81.6 86 58.1
Sabra12G0063500 Salix brachista HOM05D007312 ORTHO05D009209 6.0e-14 81.6 112 50.9
BcaC07g37774 Brassica carinata HOM05D007312 ORTHO05D009209 1.0e-13 80.9 80 55.0
BolC8t48163H Brassica oleracea HOM05D007312 ORTHO05D009209 1.0e-13 80.9 80 55.0
MELO3C021735.2 Cucumis melo HOM05D007312 ORTHO05D009209 1.3e-13 80.5 86 58.1
CsaV3_1G046220 Cucumis sativus L. HOM05D007312 ORTHO05D009209 1.3e-13 80.5 86 58.1
Nn7g38246 Nelumbo nucifera HOM05D007312 ORTHO05D009209 1.3e-13 80.5 84 51.2
SGA_v2.0_scaffold298G47689 Striga asiatica HOM05D007312 ORTHO05D009209 2.3e-13 79.7 86 57.0
AUR62017332 Chenopodium quinoa HOM05D007312 ORTHO05D009209 3.9e-13 79.0 84 52.4
Actinidia22408 Actinidia chinensis HOM05D007312 ORTHO05D009209 5.1e-13 78.6 84 48.8
Rhsim13G0146500 Rhododendron simsii HOM05D007312 ORTHO05D009209 5.1e-13 78.6 84 52.4
RhsimUnG0109200 Rhododendron simsii HOM05D007312 ORTHO05D009209 5.1e-13 78.6 84 52.4
Lsat_1_v5_gn_3_106761 Lactuca sativa HOM05D007312 ORTHO05D009209 6.7e-13 78.2 85 54.1
Sp1g26990 Schrenkiella parvula HOM05D007312 ORTHO05D009209 6.7e-13 78.2 85 51.8
Carub.0001s2957 Capsella rubella HOM05D007312 ORTHO05D009209 8.7e-13 77.8 80 52.5
THA.LOC104798553 Tarenaya hassleriana HOM05D007312 ORTHO05D009209 8.7e-13 77.8 84 70.2
Zm00001eb375250 Zea mays HOM05D007312 ORTHO05D009209 8.7e-13 77.8 72 56.9
A08p10710 Brassica napus HOM05D007312 ORTHO05D009209 1.1e-12 77.4 85 52.9
BraA08t33069Z Brassica rapa HOM05D007312 ORTHO05D009209 1.1e-12 77.4 85 52.9
HPP92_010191 Vanilla planifolia HOM05D007312 ORTHO05D009209 1.5e-12 77.0 64 65.6
vmacro03527 Vaccinium macrocarpon HOM05D007312 ORTHO05D009209 1.9e-12 76.6 44 79.5
Os06g0174300 Oryza sativa ssp. japonica HOM05D007312 ORTHO05D009209 4.3e-12 75.5 44 77.3
CAN.G149.9 Capsicum annuum HOM05D007312 ORTHO05D009209 1.3e-11 73.9 44 79.5
MBI18_g11473_MAGBIO Magnolia biondii HOM05D007312 ORTHO05D009209 1.6e-11 73.6 44 75.0
Aqoxy1G01718 Aquilegia oxysepala HOM05D007312 ORTHO05D009209 2.8e-11 72.8 44 79.5
Migut.M01988 Erythranthe guttata HOM05D007312 ORTHO05D009209 2.8e-11 72.8 43 79.1
PSO541G3426 Papaver somniferum HOM05D007312 ORTHO05D009209 6.2e-11 71.6 44 70.5
unitig_32.g10991 Utricularia gibba HOM05D000532 ORTHO05D009209 6.2e-11 71.6 44 70.5
CDE02G1125 Ceratophyllum demersum HOM05D007312 ORTHO05D009209 1.1e-10 70.9 84 47.6
arahy.Tifrunner.gnm1.ann1.FJ5394 Arachis hypogaea HOM05D007312 ORTHO05D009209 1.4e-10 70.5 42 81.0
Aa31LG2G15110 Aethionema arabicum HOM05D007312 ORTHO05D009209 1.8e-10 70.1 44 70.5
HPP92_010212 Vanilla planifolia HOM05D007312 ORTHO05D009209 4.0e-10 68.9 44 70.5
Lalb_Chr09g0328671 Lupinus albus HOM05D007312 ORTHO05D009209 1.2e-09 67.4 82 48.8
Mapoly0066s0018 Marchantia polymorpha HOM05D007312 ORTHO05D009209 1.0e-08 64.3 79 48.1
SMO145G0246 Selaginella moellendorffii HOM05D007312 ORTHO05D009209 1.3e-08 63.9 44 59.1
Pp3c7_15740 Physcomitrium patens HOM05D007312 ORTHO05D009209 4.9e-08 62.0 44 61.4
CBR_g4 Chara braunii HOM05D007312 ORTHO05D009209 7.9e-06 54.7 42 59.5


User provided reference genes

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