Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G0240 Fragaria x ananassa HOM05D008511 ORTHO05D010691 1.9e-309 1065.1 580 100.0
FAN16G0931 Fragaria x ananassa HOM05D000001 ORTHO05D009942 1.7e-132 477.2 333 85.9
FvH4_3g13180 Fragaria vesca HOM05D000001 ORTHO05D009942 3.1e-129 466.5 302 89.7
FAN11G1677 Fragaria x ananassa HOM05D000001 ORTHO05D009942 5.8e-128 462.2 302 89.4
FAN25G3648 Fragaria x ananassa HOM05D000001 ORTHO05D009942 2.7e-125 453.4 302 88.1
FvH4_3g13150 Fragaria vesca HOM05D008511 ORTHO05D010691 3.6e-114 416.4 241 90.0
FAN16G0518 Fragaria x ananassa HOM05D008511 ORTHO05D010691 1.1e-113 414.8 236 91.5
RcHm_v2.0_Chr5g0021391 Rosa chinensis HOM05D008511 ORTHO05D010691 3.3e-107 393.3 245 86.1
RcHm_v2.0_Chr5g0006011 Rosa chinensis HOM05D000001 ORTHO05D009942 6.9e-105 385.6 281 76.5
Prupe.1G096000 Prunus persica HOM05D000001 ORTHO05D009942 4.8e-98 362.8 286 72.4
MD13G1261300 Malus domestica HOM05D000001 ORTHO05D009942 7.1e-94 349.0 258 73.6
Prupe.4G119000 Prunus persica HOM05D008511 ORTHO05D010691 6.5e-87 325.9 232 75.0
MD05G1244600 Malus domestica HOM05D008511 ORTHO05D010691 4.8e-82 309.7 247 70.0
CiPaw.10G106900 Carya illinoinensis HOM05D008511 ORTHO05D010691 9.4e-70 268.9 213 66.2
QL02p095851 Quercus lobata HOM05D000001 ORTHO05D009942 3.6e-69 266.9 270 57.4
Cfa013541 Carpinus fangiana HOM05D000001 ORTHO05D009942 1.1e-67 261.9 255 59.2
CANSAT01G1218 Cannabis sativa HOM05D000001 ORTHO05D009942 5.3e-65 253.1 280 51.8
CiPaw.07G187100 Carya illinoinensis HOM05D000001 ORTHO05D009942 5.3e-65 253.1 266 54.9
Haze_05233 Corylus avellana HOM05D008511 ORTHO05D010691 1.5e-64 251.5 202 67.3
QL11p011849 Quercus lobata HOM05D008511 ORTHO05D010691 7.7e-64 249.2 218 63.8
CANSAT35G2052 Cannabis sativa HOM05D008511 ORTHO05D010691 2.3e-60 237.7 200 64.0
CsaV3_1G004210 Cucumis sativus L. HOM05D000001 ORTHO05D009942 3.3e-59 233.8 263 49.0
MELO3C004032.2 Cucumis melo HOM05D000001 ORTHO05D009942 5.3e-57 226.5 292 44.2
ClCG11G012210 Citrullus lanatus HOM05D000001 ORTHO05D009942 9.1e-57 225.7 274 46.0
Manes.08G144300 Manihot esculenta HOM05D000001 ORTHO05D009942 6.5e-55 219.5 260 48.5
Cpa.g.sc30.92 Carica papaya HOM05D008511 ORTHO05D010691 5.5e-54 216.5 179 62.6
Potri.001G075700 Populus trichocarpa HOM05D008511 ORTHO05D010691 7.2e-54 216.1 250 50.4
Atru.chr10.265 Acer truncatum HOM05D008511 ORTHO05D010691 4.7e-53 213.4 225 53.8
CsaV3_1G010050 Cucumis sativus L. HOM05D008511 ORTHO05D010691 4.7e-53 213.4 205 57.1
Manes.03G071600 Manihot esculenta HOM05D008511 ORTHO05D010691 4.7e-53 213.4 212 55.2
Potri.018G097900 Populus trichocarpa HOM05D000001 ORTHO05D009942 6.1e-53 213.0 247 49.4
Lj4g0010912 Lotus japonicus HOM05D000001 ORTHO05D009942 1.8e-52 211.5 234 52.6
Lj6g0018090 Lotus japonicus HOM05D000001 ORTHO05D009942 1.1e-51 208.8 234 49.6
PGR004G0094 Punica granatum HOM05D000001 ORTHO05D009942 1.5e-51 208.4 259 52.1
ClCG03G004120 Citrullus lanatus HOM05D008511 ORTHO05D010691 2.0e-51 208.0 211 55.9
Dinv31195 Davidia involucrata HOM05D008511 ORTHO05D010691 2.0e-51 208.0 244 50.4
BcaC09g50430 Brassica carinata HOM05D000001 ORTHO05D009942 2.6e-51 207.6 257 48.2
Glyma.17G068100 Glycine max HOM05D000001 ORTHO05D009942 2.6e-51 207.6 234 53.8
Atru.chr7.517 Acer truncatum HOM05D000001 ORTHO05D009942 4.4e-51 206.8 246 51.6
C01p25510 Brassica napus HOM05D000001 ORTHO05D009942 4.4e-51 206.8 257 48.2
BolC1t02502H Brassica oleracea HOM05D000001 ORTHO05D000003 4.4e-51 206.8 257 48.2
TAR624G0648 Trochodendron aralioides HOM05D008511 ORTHO05D010691 5.7e-51 206.5 214 54.7
VMungo1215G0291 Vigna mungo HOM05D000001 ORTHO05D009942 5.7e-51 206.5 252 51.6
BcaNung00139 Brassica carinata HOM05D000001 ORTHO05D009942 7.5e-51 206.1 257 47.5
Sp7g17230 Schrenkiella parvula HOM05D000001 ORTHO05D009942 7.5e-51 206.1 257 48.2
TWI38G1802 Tripterygium wilfordii HOM05D008511 ORTHO05D010691 7.5e-51 206.1 212 54.2
A01p20340 Brassica napus HOM05D000001 ORTHO05D009942 9.7e-51 205.7 257 47.9
Cpa.g.sc75.11 Carica papaya HOM05D000001 ORTHO05D009942 2.2e-50 204.5 253 50.2
Psat6g238680 Pisum sativum HOM05D000001 ORTHO05D009942 2.2e-50 204.5 243 49.8
Nn8g40269 Nelumbo nucifera HOM05D000001 ORTHO05D009942 2.8e-50 204.1 234 49.6
Sed0008274 Sechium edule HOM05D008511 ORTHO05D010691 2.8e-50 204.1 181 57.5
Thhalv10025772m.g Eutrema salsugineum HOM05D000001 ORTHO05D009942 8.2e-50 202.6 257 47.1
Sed0013089 Sechium edule HOM05D000001 ORTHO05D009942 1.1e-49 202.2 282 46.5
Sabra18G0084600 Salix brachista HOM05D000001 ORTHO05D009942 4.1e-49 200.3 219 53.0
Gohir.A12G050000 Gossypium hirsutum HOM05D008511 ORTHO05D010691 5.3e-49 199.9 210 55.7
AL7G37780 Arabidopsis lyrata HOM05D000001 ORTHO05D009942 7.0e-49 199.5 263 45.2
Ca_21187_v3 Cicer arietinum L. HOM05D000001 ORTHO05D009942 7.0e-49 199.5 214 52.8
AT4G16850 Arabidopsis thaliana HOM05D000001 ORTHO05D009942 9.1e-49 199.1 263 46.0
Ciclev10008915m.g Citrus clementina HOM05D000001 ORTHO05D009942 9.1e-49 199.1 267 46.1
BraA01t01964Z Brassica rapa HOM05D000001 ORTHO05D009942 1.6e-48 198.4 248 47.6
CAN.G809.39 Capsicum annuum HOM05D008511 ORTHO05D010691 3.5e-48 197.2 230 47.4
Nn7g38379 Nelumbo nucifera HOM05D008511 ORTHO05D010691 4.5e-48 196.8 183 57.4
Carub.0007s2447 Capsella rubella HOM05D000001 ORTHO05D009942 2.9e-47 194.1 263 44.1
Aa31LG2G13040 Aethionema arabicum HOM05D000001 ORTHO05D009942 3.8e-47 193.7 235 46.8
Glyma.13G092300 Glycine max HOM05D000001 ORTHO05D009942 3.8e-47 193.7 234 51.3
THA.LOC104811819 Tarenaya hassleriana HOM05D000001 ORTHO05D009942 5.0e-47 193.4 233 48.5
Nitab4.5_0000844g0310 Nicotiana tabacum HOM05D008511 ORTHO05D010691 6.5e-47 193.0 207 50.7
Thecc.02G002800 Theobroma cacao HOM05D008511 ORTHO05D010691 6.5e-47 193.0 234 50.4
Glyma.14G069900 Glycine max HOM05D000001 ORTHO05D009942 8.5e-47 192.6 232 50.9
Nitab4.5_0000632g0180 Nicotiana tabacum HOM05D008511 ORTHO05D010691 2.5e-46 191.0 207 49.8
Lalb_Chr07g0180131 Lupinus albus HOM05D000001 ORTHO05D009942 4.2e-46 190.3 233 48.5
Duzib168G2157 Durio zibethinus HOM05D000001 ORTHO05D009942 1.2e-45 188.7 273 43.6
Gohir.A05G006700 Gossypium hirsutum HOM05D000001 ORTHO05D009942 2.1e-45 188.0 267 43.8
Gorai.009G007700 Gossypium raimondii HOM05D000001 ORTHO05D009942 4.7e-45 186.8 267 43.4
Thecc.09G162400 Theobroma cacao HOM05D000001 ORTHO05D009942 6.1e-45 186.4 262 45.0
Gohir.D05G007600 Gossypium hirsutum HOM05D000001 ORTHO05D009942 1.0e-44 185.7 267 43.1
Lj9P729T26 Lonicera japonica HOM05D000001 ORTHO05D009942 1.4e-44 185.3 259 44.4
Duzib132G0693 Durio zibethinus HOM05D008511 ORTHO05D010691 3.0e-44 184.1 209 53.6
Gohir.D12G048400 Gossypium hirsutum HOM05D008511 ORTHO05D010691 3.0e-44 184.1 221 50.7
Phvul.001G010200 Phaseolus vulgaris HOM05D000001 ORTHO05D009942 4.0e-44 183.7 265 44.9
Duzib187G0438 Durio zibethinus HOM05D000001 ORTHO05D009942 2.0e-43 181.4 271 42.1
Medtr1g116000 Medicago truncatula HOM05D000001 ORTHO05D009942 2.0e-43 181.4 232 45.7
Gorai.008G051400 Gossypium raimondii HOM05D008511 ORTHO05D010691 2.6e-43 181.0 222 50.0
Nn2g12578 Nelumbo nucifera HOM05D000001 ORTHO05D009942 2.6e-43 181.0 249 44.2
VMungo0647G1251 Vigna mungo HOM05D000001 ORTHO05D009942 3.4e-43 180.6 233 49.4
Medtr4g129330 Medicago truncatula HOM05D000001 ORTHO05D009942 1.7e-42 178.3 234 47.4
Psat0s236g0120 Pisum sativum HOM05D000001 ORTHO05D009942 2.2e-42 177.9 228 46.9
arahy.Tifrunner.gnm1.ann1.HQFS40 Arachis hypogaea HOM05D000001 ORTHO05D009942 1.4e-41 175.3 250 46.4
DCAR_007773 Daucus carota HOM05D008511 ORTHO05D010691 2.4e-41 174.5 202 49.0
Sc24g0002900 Simmondsia chinensis HOM05D008511 ORTHO05D010691 1.3e-39 168.7 200 48.0
MBI14_g08066_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009942 3.8e-39 167.2 236 44.1
MBI02_g25824_MAGBIO Magnolia biondii HOM05D008511 ORTHO05D010691 8.5e-39 166.0 224 45.1
Aqoxy2G01550 Aquilegia oxysepala HOM05D008511 ORTHO05D010691 2.5e-38 164.5 178 48.3
arahy.Tifrunner.gnm1.ann1.5RH3SU Arachis hypogaea HOM05D008511 ORTHO05D010691 5.5e-38 163.3 228 44.7
arahy.Tifrunner.gnm1.ann1.LWVG2R Arachis hypogaea HOM05D008511 ORTHO05D010691 7.2e-38 162.9 229 44.5
Cfa001274 Carpinus fangiana HOM05D008511 ORTHO05D010691 6.1e-37 159.8 125 65.6
Ca_01975_v3 Cicer arietinum L. HOM05D008511 ORTHO05D010691 6.1e-37 159.8 205 44.9
SGA_v2.0_scaffold168G38543 Striga asiatica HOM05D008511 ORTHO05D010691 1.0e-36 159.1 217 44.2
Solyc07g006410.1 Solanum lycopersicum HOM05D000001 ORTHO05D009942 7.5e-35 152.9 257 38.5
Oeu010662.1 Olea europaea HOM05D008511 ORTHO05D010691 1.7e-34 151.8 210 42.9
Aqoxy7G03211 Aquilegia oxysepala HOM05D000001 ORTHO05D009942 9.2e-33 146.0 244 39.8
Migut.D01193 Erythranthe guttata HOM05D008511 ORTHO05D010691 4.5e-32 143.7 191 42.4
AUR62040282 Chenopodium quinoa HOM05D007179 ORTHO05D009124 7.3e-30 136.3 274 36.5
CARHR223490 Cardamine hirsuta HOM05D000001 ORTHO05D009942 9.5e-30 136.0 170 48.8
Nn2g12580 Nelumbo nucifera HOM05D000001 ORTHO05D009942 9.5e-30 136.0 212 41.5
AUR62039972 Chenopodium quinoa HOM05D000001 ORTHO05D009942 4.7e-29 133.7 272 37.1
TAR625G0513 Trochodendron aralioides HOM05D000001 ORTHO05D009942 4.0e-28 130.6 148 48.0
TPR.G10425 Trifolium pratense HOM05D000001 ORTHO05D009942 6.8e-28 129.8 126 52.4
CAN.G584.60 Capsicum annuum HOM05D000001 ORTHO05D009942 1.2e-27 129.0 255 37.3
Ca_11326_v3 Cicer arietinum L. HOM05D000001 ORTHO05D009942 2.6e-27 127.9 146 51.4
Sc08g0005400 Simmondsia chinensis HOM05D000001 ORTHO05D009942 4.4e-27 127.1 211 41.7
HPP92_009504 Vanilla planifolia HOM05D008511 ORTHO05D010691 1.1e-25 122.5 221 37.6
Ah.14g084030 Amaranthus hybridus HOM05D000001 ORTHO05D009942 1.6e-24 118.6 277 38.3
ATR0580G034 Amborella trichopoda HOM05D000001 ORTHO05D009942 4.6e-24 117.1 225 36.0
Sabra01G0053200 Salix brachista HOM05D008511 ORTHO05D010691 5.9e-24 116.7 112 50.9
Ca_11327_v3 Cicer arietinum L. HOM05D000001 ORTHO05D009942 5.0e-23 113.6 147 49.0
Sopen02g026560 Solanum pennellii HOM05D008511 ORTHO05D010691 4.3e-22 110.5 101 49.5
Solyc02g081930.3 Solanum lycopersicum HOM05D008511 ORTHO05D010691 1.2e-21 109.0 156 39.7
COL.COLO4_16225 Corchorus olitorius HOM05D008511 ORTHO05D010691 8.0e-21 106.3 114 46.5
Peaxi162Scf00457g00043 Petunia axillaris HOM05D000001 ORTHO05D009942 4.4e-19 100.5 128 44.5
Nitab4.5_0004017g0010 Nicotiana tabacum HOM05D000001 ORTHO05D009942 7.5e-19 99.8 114 49.1
Sopen07g002510 Solanum pennellii HOM05D000001 ORTHO05D009942 3.2e-17 94.4 118 45.8
Ciclev10006798m.g Citrus clementina HOM05D000001 ORTHO05D009942 7.0e-17 93.2 124 45.2
PGSC0003DMG400027446 Solanum tuberosum HOM05D000001 ORTHO05D009942 1.6e-16 92.0 112 47.3
Os01g0616800 Oryza sativa ssp. japonica HOM05D008511 ORTHO05D010691 1.7e-15 88.6 204 35.3
ATR0580G174 Amborella trichopoda HOM05D004960 ORTHO05D004696 1.4e-12 79.0 304 28.3
TWI32G0375 Tripterygium wilfordii HOM05D000001 ORTHO05D009942 1.4e-12 79.0 96 45.8
ATR0763G254 Amborella trichopoda HOM05D008511 ORTHO05D010691 1.8e-12 78.6 155 34.8
Zm00001eb162150 Zea mays HOM05D008511 ORTHO05D010691 3.7e-10 70.9 185 31.9
ATR0580G065 Amborella trichopoda HOM05D004960 ORTHO05D004696 4.9e-10 70.5 231 28.1
SalBow3G2667 Salvia bowleyana HOM05D008511 ORTHO05D010691 1.1e-09 69.3 104 41.3
MBI14_g30701_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 2.4e-09 68.2 233 27.9
PGSC0003DMG402007333 Solanum tuberosum HOM05D008511 ORTHO05D010691 1.2e-08 65.9 54 63.0
CSS0022952 Camellia sinensis var. sinensis HOM05D012567 ORTHO05D004696 1.6e-08 65.5 230 28.3
THA.LOC104798556 Tarenaya hassleriana HOM05D001062 ORTHO05D000884 2.1e-08 65.1 224 29.0
SGA_v2.0_scaffold298G47690 Striga asiatica HOM05D001062 ORTHO05D000884 1.0e-07 62.8 262 29.0
CSS0038346 Camellia sinensis var. sinensis HOM05D012567 ORTHO05D004696 1.3e-07 62.4 230 27.4
TAR626G1729 Trochodendron aralioides HOM05D004960 ORTHO05D004696 1.3e-07 62.4 308 25.3
THA.LOC104812705 Tarenaya hassleriana HOM05D001062 ORTHO05D000884 2.3e-07 61.6 243 26.3
COL.COLO4_16055 Corchorus olitorius HOM05D000001 ORTHO05D009942 3.9e-07 60.8 94 37.2
THA.LOC104814356 Tarenaya hassleriana HOM05D001062 ORTHO05D000884 3.9e-07 60.8 243 25.9
Migut.M01989 Erythranthe guttata HOM05D001062 ORTHO05D000884 5.1e-07 60.5 232 28.4
SGA_v2.0_scaffold175G39354 Striga asiatica HOM05D001062 ORTHO05D000884 5.1e-07 60.5 232 26.7
QL11p013748 Quercus lobata HOM05D001062 ORTHO05D000884 6.6e-07 60.1 232 26.7
Cpa.g.sc30.143 Carica papaya HOM05D001062 ORTHO05D000884 8.6e-07 59.7 261 27.2
COL.COLO4_07172 Corchorus olitorius HOM05D001062 ORTHO05D000884 1.5e-06 58.9 214 28.5
HanXRQChr03g0068481 Helianthus annuus HOM05D004960 ORTHO05D004696 2.5e-06 58.2 261 27.6
Hma1.2p1_0921F.1_g236760 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 2.5e-06 58.2 235 27.7
Hma1.2p1_0921F.1_g236792 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 2.5e-06 58.2 235 27.7
MSTRG.16359 Avicennia marina HOM05D001062 ORTHO05D000884 3.3e-06 57.8 232 28.9
Gohir.D02G239300 Gossypium hirsutum HOM05D001062 ORTHO05D000884 3.3e-06 57.8 217 29.0
Gorai.005G267600 Gossypium raimondii HOM05D001062 ORTHO05D000884 3.3e-06 57.8 217 29.0
Duzib132G1009 Durio zibethinus HOM05D001062 ORTHO05D000884 4.3e-06 57.4 232 28.4
Thecc.02G007900 Theobroma cacao HOM05D001062 ORTHO05D000884 7.3e-06 56.6 214 28.5
CsaV3_1G010230 Cucumis sativus L. HOM05D001062 ORTHO05D000884 9.5e-06 56.2 263 24.7


User provided reference genes

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