Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G0215 Fragaria x ananassa HOM05D005295 ORTHO05D005962 1.1e-117 426.8 236 100.0
FvH4_3g19520 Fragaria vesca HOM05D005295 ORTHO05D005962 2.1e-116 422.5 236 98.7
FAN25G2205 Fragaria x ananassa HOM05D005295 ORTHO05D005962 3.9e-115 418.3 236 98.3
FAN11G0135 Fragaria x ananassa HOM05D005295 ORTHO05D005962 6.0e-108 394.4 236 91.1
RcHm_v2.0_Chr5g0032761 Rosa chinensis HOM05D005295 ORTHO05D005962 5.6e-106 387.9 238 90.3
Prupe.4G176600 Prunus persica HOM05D005295 ORTHO05D005962 7.7e-79 297.7 236 66.9
MD03G1231400 Malus domestica HOM05D005295 ORTHO05D005962 3.2e-77 292.4 236 63.1
Haze_09452 Corylus avellana HOM05D005295 ORTHO05D005962 3.2e-69 265.8 236 65.3
Cfa020562 Carpinus fangiana HOM05D005295 ORTHO05D005962 2.1e-68 263.1 237 64.6
CiPaw.11G171800 Carya illinoinensis HOM05D005295 ORTHO05D005962 9.7e-66 254.2 237 58.6
Lj3g0021836 Lotus japonicus HOM05D005295 ORTHO05D005962 2.8e-65 252.7 236 56.4
VMungo1080G0752 Vigna mungo HOM05D005295 ORTHO05D005962 2.8e-65 252.7 236 56.4
Lalb_Chr20g0109501 Lupinus albus HOM05D005295 ORTHO05D005962 4.8e-65 251.9 236 55.5
Sed0001385 Sechium edule HOM05D005295 ORTHO05D005962 6.3e-65 251.5 236 54.2
Hma1.2p1_0387F.1_g141920 Hydrangea macrophylla HOM05D005295 ORTHO05D005962 8.2e-65 251.1 233 61.4
Sabra11G0101800 Salix brachista HOM05D005295 ORTHO05D005962 8.2e-65 251.1 233 63.9
Phvul.005G075000 Phaseolus vulgaris HOM05D005295 ORTHO05D005962 1.4e-64 250.4 236 55.5
Glyma.13G273800 Glycine max HOM05D005295 ORTHO05D005962 1.8e-64 250.0 236 55.5
Manes.03G106500 Manihot esculenta HOM05D005295 ORTHO05D005962 2.4e-64 249.6 235 63.4
Potri.011G116200 Populus trichocarpa HOM05D005295 ORTHO05D005962 7.0e-64 248.1 233 63.1
CSS0001236 Camellia sinensis var. sinensis HOM05D005295 ORTHO05D005962 1.5e-63 246.9 244 58.2
ClCG11G017890 Citrullus lanatus HOM05D005295 ORTHO05D005962 3.5e-63 245.7 235 55.3
MELO3C025603.2 Cucumis melo HOM05D005295 ORTHO05D005962 3.5e-63 245.7 230 54.3
CsaV3_4G033520 Cucumis sativus L. HOM05D005295 ORTHO05D005962 3.5e-63 245.7 230 54.3
Actinidia12794 Actinidia chinensis HOM05D005295 ORTHO05D005962 4.5e-63 245.4 241 56.4
arahy.Tifrunner.gnm1.ann1.3CLR9I Arachis hypogaea HOM05D005295 ORTHO05D005962 4.5e-63 245.4 239 58.2
arahy.Tifrunner.gnm1.ann1.B1NQ7W Arachis hypogaea HOM05D005295 ORTHO05D005962 1.0e-62 244.2 239 57.7
Sabra16G0260000 Salix brachista HOM05D005295 ORTHO05D005962 1.3e-62 243.8 233 54.9
CANSAT56G1083 Cannabis sativa HOM05D005295 ORTHO05D005962 1.7e-62 243.4 242 52.1
Medtr2g078650 Medicago truncatula HOM05D005295 ORTHO05D005962 2.9e-62 242.7 230 54.8
Aa31LG5G9970 Aethionema arabicum HOM05D005295 ORTHO05D005962 8.5e-62 241.1 233 51.5
Potri.001G396900 Populus trichocarpa HOM05D005295 ORTHO05D005962 1.1e-61 240.7 233 61.8
Thecc.07G095500 Theobroma cacao HOM05D005295 ORTHO05D005962 1.9e-61 240.0 237 53.2
TWI38G0013 Tripterygium wilfordii HOM05D005295 ORTHO05D005962 1.9e-61 240.0 236 53.4
Rhsim06G0201600 Rhododendron simsii HOM05D005295 ORTHO05D005962 9.4e-61 237.7 236 57.6
Solyc12g013910.2 Solanum lycopersicum HOM05D005295 ORTHO05D005962 1.2e-60 237.3 240 58.8
TWI39G0015 Tripterygium wilfordii HOM05D005295 ORTHO05D005962 1.2e-60 237.3 236 55.5
Thhalv10026112m.g Eutrema salsugineum HOM05D005295 ORTHO05D005962 1.6e-60 236.9 241 56.0
Sopen12g005670 Solanum pennellii HOM05D005295 ORTHO05D005962 1.6e-60 236.9 240 58.8
PGSC0003DMG400015366 Solanum tuberosum HOM05D005295 ORTHO05D005962 2.7e-60 236.1 238 58.8
Carub.0007s1331 Capsella rubella HOM05D005295 ORTHO05D005962 8.0e-60 234.6 238 55.5
CARHR235220 Cardamine hirsuta HOM05D005295 ORTHO05D005962 8.0e-60 234.6 242 56.6
Cc05_g11790 Coffea canephora HOM05D005295 ORTHO05D005962 1.0e-59 234.2 241 58.9
AL7G25230 Arabidopsis lyrata HOM05D005295 ORTHO05D005962 1.4e-59 233.8 241 56.4
A01p18770 Brassica napus HOM05D005295 ORTHO05D005962 1.4e-59 233.8 243 56.4
Duzib213G0204 Durio zibethinus HOM05D005295 ORTHO05D005962 1.4e-59 233.8 237 55.7
Gohir.A04G035200 Gossypium hirsutum HOM05D005295 ORTHO05D005962 1.8e-59 233.4 239 50.6
Sp7g25480 Schrenkiella parvula HOM05D005295 ORTHO05D005962 1.8e-59 233.4 241 56.4
C01p23710 Brassica napus HOM05D005295 ORTHO05D005962 2.3e-59 233.0 242 55.4
BcaNung06687 Brassica carinata HOM05D005295 ORTHO05D005962 3.0e-59 232.6 242 55.4
Psat0s1402g0040 Pisum sativum HOM05D005295 ORTHO05D005962 4.0e-59 232.3 230 53.5
BolC1t02323H Brassica oleracea HOM05D005295 ORTHO05D005962 5.2e-59 231.9 242 55.4
AT4G27540 Arabidopsis thaliana HOM05D005295 ORTHO05D005962 8.8e-59 231.1 241 56.0
Migut.M00784 Erythranthe guttata HOM05D005295 ORTHO05D005962 8.8e-59 231.1 237 54.0
Oeu019302.2 Olea europaea HOM05D005295 ORTHO05D005962 8.8e-59 231.1 240 50.0
PGR083G0729 Punica granatum HOM05D005295 ORTHO05D005962 1.5e-58 230.3 228 57.9
Eucgr.F01159 Eucalyptus grandis HOM05D005295 ORTHO05D005962 2.0e-58 229.9 228 58.8
GSVIVG01014296001 Vitis vinifera HOM05D005295 ORTHO05D005962 2.0e-58 229.9 233 51.9
Gorai.009G376000 Gossypium raimondii HOM05D005295 ORTHO05D005962 2.6e-58 229.6 239 50.2
THA.LOC104811877 Tarenaya hassleriana HOM05D005295 ORTHO05D005962 2.6e-58 229.6 233 50.6
Cpa.g.sc622.2 Carica papaya HOM05D005295 ORTHO05D005962 7.5e-58 228.0 233 56.2
BcaNung06688 Brassica carinata HOM05D005295 ORTHO05D005962 9.7e-58 227.6 243 54.7
COL.COLO4_36711 Corchorus olitorius HOM05D005295 ORTHO05D005962 9.7e-58 227.6 240 54.6
BraA01t01821Z Brassica rapa HOM05D005295 ORTHO05D005962 1.3e-57 227.3 243 55.6
Lj8A154T78 Lonicera japonica HOM05D005295 ORTHO05D005962 1.3e-57 227.3 259 54.8
Ca_03531_v3 Cicer arietinum L. HOM05D005295 ORTHO05D005962 3.7e-57 225.7 236 57.6
HanXRQChr12g0361161 Helianthus annuus HOM05D005295 ORTHO05D005962 1.8e-56 223.4 245 55.1
ECA234G3281 Erigeron canadensis HOM05D005295 ORTHO05D005962 2.4e-56 223.0 241 56.0
Lsat_1_v5_gn_5_128440 Lactuca sativa HOM05D005295 ORTHO05D005962 5.3e-56 221.9 239 49.4
CAN.G213.18 Capsicum annuum HOM05D005295 ORTHO05D005962 7.0e-56 221.5 243 56.0
Nn1g04175 Nelumbo nucifera HOM05D005295 ORTHO05D005962 3.5e-55 219.2 243 54.7
Aqoxy1G02337 Aquilegia oxysepala HOM05D005295 ORTHO05D005962 5.9e-55 218.4 236 53.0
Ciclev10009380m.g Citrus clementina HOM05D005295 ORTHO05D005962 7.7e-55 218.0 232 56.0
Ciclev10009383m.g Citrus clementina HOM05D005295 ORTHO05D005962 1.0e-54 217.6 232 56.5
SGA_v2.0_scaffold34G13800 Striga asiatica HOM05D005295 ORTHO05D005962 1.7e-54 216.9 224 52.2
Peaxi162Scf00000g00314 Petunia axillaris HOM05D005295 ORTHO05D005962 2.9e-54 216.1 241 55.2
SalBow8G4458 Salvia bowleyana HOM05D005295 ORTHO05D005962 2.9e-54 216.1 232 50.9
TPR.G7946 Trifolium pratense HOM05D005295 ORTHO05D005962 2.9e-54 216.1 231 51.1
SGA_v2.0_scaffold73G24237 Striga asiatica HOM05D005295 ORTHO05D005962 5.0e-54 215.3 232 49.6
Hund22882 Selenicereus undatus HOM05D005295 ORTHO05D005962 6.5e-54 214.9 257 54.5
PSO675G2991 Papaver somniferum HOM05D005295 ORTHO05D005962 8.5e-54 214.5 250 50.4
EL10Ac4g08225 Beta vulgaris HOM05D005295 ORTHO05D005962 3.2e-53 212.6 252 53.6
unitig_0.g1149 Utricularia gibba HOM05D005295 ORTHO05D005962 5.5e-53 211.8 230 49.6
Ah.06g184530 Amaranthus hybridus HOM05D005295 ORTHO05D005962 7.2e-53 211.5 257 47.5
Nitab4.5_0000332g0010 Nicotiana tabacum HOM05D005295 ORTHO05D005962 2.1e-52 209.9 259 50.6
MBI02_g22345_MAGBIO Magnolia biondii HOM05D005295 ORTHO05D005962 8.8e-51 204.5 232 54.3
Sc16g0007150 Simmondsia chinensis HOM05D005295 ORTHO05D005962 2.0e-50 203.4 221 52.5
AUR62036172 Chenopodium quinoa HOM05D005295 ORTHO05D005962 9.8e-50 201.1 258 52.3
Gohir.D05G348200 Gossypium hirsutum HOM05D005295 ORTHO05D005962 9.8e-50 201.1 239 45.6
QL08p022700 Quercus lobata HOM05D005295 ORTHO05D005962 4.8e-49 198.7 348 42.0
Atru.chr2.2424 Acer truncatum HOM05D005295 ORTHO05D005962 1.0e-46 191.0 261 48.7
CDE05G1939 Ceratophyllum demersum HOM05D005295 ORTHO05D005962 1.2e-44 184.1 222 45.5
CDE05G3097 Ceratophyllum demersum HOM05D006331 ORTHO05D008043 1.2e-42 177.6 225 48.4
MSTRG.6822 Avicennia marina HOM05D005295 ORTHO05D005962 9.8e-42 174.5 188 58.0
BolC2t07912H Brassica oleracea HOM05D005295 ORTHO05D005962 9.8e-42 174.5 230 42.2
DCAR_013119 Daucus carota HOM05D005295 ORTHO05D005962 9.8e-42 174.5 203 43.3
BcaC03g14369 Brassica carinata HOM05D005295 ORTHO05D005962 1.7e-41 173.7 230 42.6
BcaB05g22086 Brassica carinata HOM05D005295 ORTHO05D005962 2.4e-40 169.9 222 41.0
Zm00001eb231100 Zea mays HOM05D005295 ORTHO05D005962 9.1e-40 167.9 230 43.5
AUR62019458 Chenopodium quinoa HOM05D005295 ORTHO05D005962 4.5e-39 165.6 234 50.0
HPP92_003730 Vanilla planifolia HOM05D005295 ORTHO05D005962 7.7e-39 164.9 231 44.2
C02p17850 Brassica napus HOM05D005295 ORTHO05D005962 3.8e-38 162.5 238 38.7
ATR0150G019 Amborella trichopoda HOM05D005295 ORTHO05D005962 4.7e-36 155.6 239 37.7
BcaC03g14372 Brassica carinata HOM05D005295 ORTHO05D005962 4.7e-36 155.6 240 38.3
BolC2t07916H Brassica oleracea HOM05D005295 ORTHO05D005962 4.7e-36 155.6 240 38.3
C02p17830 Brassica napus HOM05D005295 ORTHO05D005962 8.9e-35 151.4 168 44.0
A02p10710 Brassica napus HOM05D005295 ORTHO05D005962 6.4e-33 145.2 168 42.9
BraA02t06134Z Brassica rapa HOM05D005295 ORTHO05D005962 6.4e-33 145.2 168 42.9
Thhalv10015755m.g Eutrema salsugineum HOM05D005295 ORTHO05D005962 1.4e-32 144.1 171 43.9
vmacro11885 Vaccinium macrocarpon HOM05D005295 ORTHO05D005962 1.3e-30 137.5 234 37.2
SEGI_06803 Sequoiadendron giganteum HOM05D005295 ORTHO05D005962 1.1e-29 134.4 224 34.4
Eucgr.F01198 Eucalyptus grandis HOM05D005295 ORTHO05D005962 2.1e-28 130.2 143 56.6
Ciclev10010240m.g Citrus clementina HOM05D005295 ORTHO05D005962 4.9e-25 119.0 232 43.1
Dinv14935 Davidia involucrata HOM05D005295 ORTHO05D005962 6.4e-25 118.6 133 54.9
MD06G1175000 Malus domestica HOM05D005295 ORTHO05D005962 8.3e-25 118.2 111 53.2
Pp3c9_10810 Physcomitrium patens HOM05D005295 ORTHO05D005962 1.1e-24 117.9 243 32.9
Os09g0134400 Oryza sativa ssp. japonica HOM05D005295 ORTHO05D005962 9.2e-24 114.8 231 41.1
SMO285G0011 Selaginella moellendorffii HOM05D005295 ORTHO05D005962 1.6e-23 114.0 226 31.4
Lj1C840T8 Lonicera japonica HOM05D005295 ORTHO05D005962 1.2e-20 104.4 130 47.7
BcaNung07036 Brassica carinata HOM05D005295 ORTHO05D005962 8.9e-19 98.2 88 54.5
Carub.0003s1487 Capsella rubella HOM05D005295 ORTHO05D005962 8.9e-19 98.2 166 39.8
Mapoly0124s0020 Marchantia polymorpha HOM05D005295 ORTHO05D005962 8.9e-19 98.2 232 31.0
Dinv12314 Davidia involucrata HOM05D005295 ORTHO05D005962 2.4e-16 90.1 128 45.3
BcaB04g20941 Brassica carinata HOM05D001464 ORTHO05D005962 5.1e-14 82.4 150 38.0
BcaB06g26783 Brassica carinata HOM05D005295 ORTHO05D005962 1.1e-13 81.3 118 40.7
BcaC09g48479 Brassica carinata HOM05D005295 ORTHO05D005962 1.5e-13 80.9 118 43.2
BolC1t04893H Brassica oleracea HOM05D005295 ORTHO05D005962 1.5e-13 80.9 118 43.2
C01p49340 Brassica napus HOM05D005295 ORTHO05D005962 2.5e-13 80.1 118 42.4
A01p38800 Brassica napus HOM05D005295 ORTHO05D005962 5.6e-13 79.0 118 42.4
BraA01t03927Z Brassica rapa HOM05D005295 ORTHO05D005962 5.6e-13 79.0 118 42.4
AL3G27610 Arabidopsis lyrata HOM05D005295 ORTHO05D005962 1.5e-10 70.9 127 35.4
Hma1.2p1_0387F.1_g141930 Hydrangea macrophylla HOM05D005295 ORTHO05D005962 2.2e-09 67.0 54 51.9
Duzib268G1416 Durio zibethinus HOM05D005295 ORTHO05D005962 2.4e-08 63.5 204 29.9
AagrBONN_evm.TU.Sc2ySwM_117.1842 Anthoceros agrestis HOM05D005295 ORTHO05D005962 1.6e-07 60.8 158 29.1


User provided reference genes

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