Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G0204 Fragaria x ananassa HOM05D006936 ORTHO05D008273 1.8e-139 499.2 250 100.0
FAN11G3489 Fragaria x ananassa HOM05D006936 ORTHO05D008273 8.9e-118 427.2 260 86.9
FAN16G3045 Fragaria x ananassa HOM05D006936 ORTHO05D008273 1.2e-101 373.6 281 73.7
FvH4_3g22870 Fragaria vesca HOM05D006936 ORTHO05D008273 1.8e-94 349.7 179 98.3
RcHm_v2.0_Chr5g0040171 Rosa chinensis HOM05D006936 ORTHO05D008273 3.2e-83 312.4 183 88.0
Prupe.4G214700 Prunus persica HOM05D006936 ORTHO05D008273 1.4e-67 260.4 184 73.4
MD11G1216700 Malus domestica HOM05D006936 ORTHO05D008273 1.6e-66 256.9 184 72.3
Hma1.2p1_0738F.1_g211120 Hydrangea macrophylla HOM05D006936 ORTHO05D008273 5.6e-64 248.4 188 70.2
Hma1.2p1_2518F.1_g323766 Hydrangea macrophylla HOM05D006936 ORTHO05D008273 5.6e-64 248.4 188 70.2
GSVIVG01037658001 Vitis vinifera HOM05D006936 ORTHO05D008273 9.6e-64 247.7 180 72.2
Haze_09683 Corylus avellana HOM05D006936 ORTHO05D008273 1.1e-62 244.2 186 67.7
TAR624G1327 Trochodendron aralioides HOM05D006936 ORTHO05D008273 1.2e-61 240.7 190 68.4
CSS0049611 Camellia sinensis var. sinensis HOM05D006936 ORTHO05D008273 7.6e-61 238.0 187 66.3
ClCG10G005400 Citrullus lanatus HOM05D006936 ORTHO05D008273 7.6e-61 238.0 184 66.8
Manes.03G129900 Manihot esculenta HOM05D006936 ORTHO05D008273 2.9e-60 236.1 180 69.4
Potri.003G122100 Populus trichocarpa HOM05D006936 ORTHO05D008273 4.9e-60 235.3 184 66.3
CiPaw.11G190300 Carya illinoinensis HOM05D006936 ORTHO05D008273 6.5e-60 235.0 185 67.6
Ciclev10009642m.g Citrus clementina HOM05D006936 ORTHO05D008273 1.1e-59 234.2 183 68.3
Gohir.D01G067300 Gossypium hirsutum HOM05D006936 ORTHO05D008273 1.1e-59 234.2 179 68.7
Thecc.07G035400 Theobroma cacao HOM05D006936 ORTHO05D008273 1.4e-59 233.8 180 68.3
Ca_19852_v3 Cicer arietinum L. HOM05D006936 ORTHO05D008273 1.9e-59 233.4 185 65.4
Glyma.18G095900 Glycine max HOM05D006936 ORTHO05D008273 1.9e-59 233.4 196 62.2
Gorai.002G089200 Gossypium raimondii HOM05D006936 ORTHO05D008273 1.9e-59 233.4 180 69.4
Lj6g0001928 Lotus japonicus HOM05D006936 ORTHO05D008273 4.2e-59 232.3 184 64.7
Eucgr.F03471 Eucalyptus grandis HOM05D006936 ORTHO05D008273 9.3e-59 231.1 185 65.9
Medtr3g052260 Medicago truncatula HOM05D006936 ORTHO05D008273 1.6e-58 230.3 184 64.1
Cpa.g.sc12.300 Carica papaya HOM05D006936 ORTHO05D008273 2.7e-58 229.6 184 64.1
Phvul.006G044500 Phaseolus vulgaris HOM05D006936 ORTHO05D008273 6.0e-58 228.4 184 64.7
CsaV3_3G005130 Cucumis sativus L. HOM05D006936 ORTHO05D008273 1.0e-57 227.6 184 65.2
Glyma.08G317000 Glycine max HOM05D006936 ORTHO05D008273 3.0e-57 226.1 184 64.7
Aqoxy3G01790 Aquilegia oxysepala HOM05D006936 ORTHO05D008273 3.9e-57 225.7 195 65.1
Duzib213G0701 Durio zibethinus HOM05D006936 ORTHO05D008273 3.9e-57 225.7 180 67.8
VMungo0540G1312 Vigna mungo HOM05D006936 ORTHO05D008273 3.9e-57 225.7 184 63.6
BcaC07g38260 Brassica carinata HOM05D006936 ORTHO05D008273 1.5e-56 223.8 186 62.4
BcaNung03571 Brassica carinata HOM05D006936 ORTHO05D008273 2.5e-56 223.0 186 59.1
Gohir.A01G080100 Gossypium hirsutum HOM05D006936 ORTHO05D008273 2.5e-56 223.0 179 66.5
Carub.0007s1390 Capsella rubella HOM05D006936 ORTHO05D008273 3.3e-56 222.6 186 59.7
Lalb_Chr20g0113821 Lupinus albus HOM05D006936 ORTHO05D008273 9.6e-56 221.1 187 62.0
TWI38G2356 Tripterygium wilfordii HOM05D006936 ORTHO05D008273 1.3e-55 220.7 185 65.4
TPR.G33779 Trifolium pratense HOM05D006936 ORTHO05D008273 1.6e-55 220.3 185 62.2
QL08p009960 Quercus lobata HOM05D006936 ORTHO05D008273 6.3e-55 218.4 230 53.5
TWI39G1260 Tripterygium wilfordii HOM05D006936 ORTHO05D008273 6.3e-55 218.4 188 63.3
C01p23100 Brassica napus HOM05D006936 ORTHO05D008273 8.2e-55 218.0 186 60.8
AL7G25870 Arabidopsis lyrata HOM05D006936 ORTHO05D008273 1.4e-54 217.2 185 60.5
A01p18140 Brassica napus HOM05D006936 ORTHO05D008273 1.8e-54 216.9 189 58.7
Cc05_g13850 Coffea canephora HOM05D006936 ORTHO05D008273 2.4e-54 216.5 190 62.6
C08p10070 Brassica napus HOM05D006936 ORTHO05D008273 4.1e-54 215.7 186 61.8
BolC8t48685H Brassica oleracea HOM05D006936 ORTHO05D008273 4.1e-54 215.7 186 61.8
Psat5g178440 Pisum sativum HOM05D006936 ORTHO05D008273 4.1e-54 215.7 186 60.8
Potri.001G109600 Populus trichocarpa HOM05D006936 ORTHO05D008273 4.1e-54 215.7 187 63.6
Sp7g24910 Schrenkiella parvula HOM05D006936 ORTHO05D008273 4.1e-54 215.7 186 58.1
BraA01t01769Z Brassica rapa HOM05D006936 ORTHO05D008273 3.4e-53 212.6 197 55.8
DCAR_022566 Daucus carota HOM05D006936 ORTHO05D008273 7.6e-53 211.5 188 59.0
PSO832G3825 Papaver somniferum HOM05D006936 ORTHO05D008273 7.6e-53 211.5 181 60.8
THA.LOC104813424 Tarenaya hassleriana HOM05D006936 ORTHO05D008273 7.6e-53 211.5 189 58.2
AT4G26965 Arabidopsis thaliana HOM05D006936 ORTHO05D008273 1.3e-52 210.7 185 60.0
PSO210G5704 Papaver somniferum HOM05D006936 ORTHO05D008273 1.7e-52 210.3 190 57.9
BcaB03g12517 Brassica carinata HOM05D006936 ORTHO05D008273 3.8e-52 209.1 188 58.5
BolC1t02244H Brassica oleracea HOM05D006936 ORTHO05D008273 5.0e-52 208.8 200 54.5
Migut.H01824 Erythranthe guttata HOM05D006936 ORTHO05D008273 5.0e-52 208.8 181 57.5
HanXRQChr03g0076461 Helianthus annuus HOM05D006936 ORTHO05D008273 8.5e-52 208.0 188 58.5
PGR031G2182 Punica granatum HOM05D006936 ORTHO05D008273 1.1e-51 207.6 185 61.6
Lsat_1_v5_gn_9_93840 Lactuca sativa HOM05D006936 ORTHO05D008273 4.2e-51 205.7 187 58.3
Sopen07g032840 Solanum pennellii HOM05D006936 ORTHO05D008273 4.2e-51 205.7 180 60.0
ECA240G2843 Erigeron canadensis HOM05D006936 ORTHO05D008273 7.2e-51 204.9 173 60.7
arahy.Tifrunner.gnm1.ann1.MX8M57 Arachis hypogaea HOM05D006936 ORTHO05D008273 1.2e-50 204.1 155 65.2
EL10Ac4g07798 Beta vulgaris HOM05D006936 ORTHO05D008273 1.2e-50 204.1 188 56.9
PGSC0003DMG401022215 Solanum tuberosum HOM05D006936 ORTHO05D008273 1.2e-50 204.1 180 59.4
arahy.Tifrunner.gnm1.ann1.HAV09U Arachis hypogaea HOM05D006936 ORTHO05D008273 2.1e-50 203.4 154 66.2
HPP92_004131 Vanilla planifolia HOM05D006936 ORTHO05D008273 2.1e-50 203.4 185 60.5
Solyc07g064640.3 Solanum lycopersicum HOM05D006936 ORTHO05D008273 6.1e-50 201.8 180 58.3
Rhsim06G0217500 Rhododendron simsii HOM05D000228 ORTHO05D001122 1.8e-49 200.3 164 62.8
MSTRG.12976 Avicennia marina HOM05D006936 ORTHO05D008273 2.3e-49 199.9 193 56.5
Sc16g0005990 Simmondsia chinensis HOM05D006936 ORTHO05D008273 3.9e-49 199.1 189 58.2
SGA_v2.0_scaffold8G04322 Striga asiatica HOM05D006936 ORTHO05D008273 1.9e-48 196.8 187 59.9
Cfa020336 Carpinus fangiana HOM05D000228 ORTHO05D001122 3.3e-48 196.1 140 67.1
Oeu048401.1 Olea europaea HOM05D006936 ORTHO05D008273 2.2e-47 193.4 133 72.2
BraA08t34018Z Brassica rapa HOM05D006936 ORTHO05D008273 2.8e-47 193.0 225 50.7
Os09g0500200 Oryza sativa ssp. japonica HOM05D006936 ORTHO05D008273 3.7e-47 192.6 185 60.0
Hma1.2p1_0738F.1_g211130 Hydrangea macrophylla HOM05D006936 ORTHO05D008273 6.3e-47 191.8 142 71.1
unitig_8.g4785 Utricularia gibba HOM05D006936 ORTHO05D008273 1.4e-46 190.7 181 54.7
Nn1g03514 Nelumbo nucifera HOM05D006936 ORTHO05D008273 4.1e-46 189.1 189 57.7
Thhalv10026517m.g Eutrema salsugineum HOM05D006936 ORTHO05D008273 1.2e-45 187.6 134 67.9
A08p20640 Brassica napus HOM05D006936 ORTHO05D008273 2.0e-45 186.8 165 61.2
Peaxi162Scf00235g00220 Petunia axillaris HOM05D006936 ORTHO05D008273 5.9e-45 185.3 208 51.0
CDE05G0574 Ceratophyllum demersum HOM05D006936 ORTHO05D008273 1.0e-44 184.5 133 70.7
Sabra01G0082900 Salix brachista HOM05D006936 ORTHO05D008273 1.3e-44 184.1 150 62.7
Nitab4.5_0007360g0030 Nicotiana tabacum HOM05D006936 ORTHO05D008273 1.9e-43 180.3 133 65.4
Sed0005355 Sechium edule HOM05D006936 ORTHO05D008273 2.5e-43 179.9 133 66.2
Nitab4.5_0003495g0030 Nicotiana tabacum HOM05D006936 ORTHO05D008273 4.2e-43 179.1 133 65.4
CANSAT11G0469 Cannabis sativa HOM05D006936 ORTHO05D008273 7.2e-43 178.3 188 54.8
CAN.G337.138 Capsicum annuum HOM05D006936 ORTHO05D008273 1.2e-42 177.6 179 55.9
Zm00001eb102230 Zea mays HOM05D006936 ORTHO05D008273 7.9e-42 174.9 181 56.4
CARHR234570 Cardamine hirsuta HOM05D006936 ORTHO05D008273 1.8e-41 173.7 151 60.9
MBI02_g21871_MAGBIO Magnolia biondii HOM05D006936 ORTHO05D008273 1.8e-41 173.7 221 47.5
ATR1094G005 Amborella trichopoda HOM05D006936 ORTHO05D008273 4.4e-40 169.1 151 58.9
MELO3C025377.2 Cucumis melo HOM05D006936 ORTHO05D008273 1.1e-38 164.5 200 50.5
Dinv40761 Davidia involucrata HOM05D006936 ORTHO05D008273 4.5e-37 159.1 133 65.4
Sabra18G0079500 Salix brachista HOM05D006936 ORTHO05D008273 1.1e-35 154.5 161 50.3
Aa31LG5G12010 Aethionema arabicum HOM05D006936 ORTHO05D008273 5.5e-35 152.1 183 48.6
vmacro02233 Vaccinium macrocarpon HOM05D006936 ORTHO05D008273 1.8e-33 147.1 91 76.9
Atru.chr2.3444 Acer truncatum HOM05D006936 ORTHO05D008273 5.2e-33 145.6 120 60.0
Actinidia24797 Actinidia chinensis HOM05D006936 ORTHO05D008273 4.1e-30 136.0 126 59.5
Hma1.2p1_0738F.1_g211110 Hydrangea macrophylla HOM05D006936 ORTHO05D008273 5.9e-29 132.1 74 81.1
Hund23239 Selenicereus undatus HOM05D006936 ORTHO05D008273 2.9e-28 129.8 188 43.6
AUR62020430 Chenopodium quinoa HOM05D006936 ORTHO05D008273 1.5e-27 127.5 196 40.8
Os05g0538900 Oryza sativa ssp. japonica HOM05D006936 ORTHO05D008273 2.1e-26 123.6 107 60.7
Hma1.2p1_0738F.1_g211140 Hydrangea macrophylla HOM05D006936 ORTHO05D008273 3.6e-26 122.9 122 59.8
Hma1.2p1_2518F.1_g323762 Hydrangea macrophylla HOM05D006936 ORTHO05D008273 3.6e-26 122.9 122 59.8
Mapoly0093s0007 Marchantia polymorpha HOM05D006936 ORTHO05D008273 4.5e-21 105.9 205 38.0
arahy.Tifrunner.gnm1.ann1.XX62UZ Arachis hypogaea HOM05D006936 ORTHO05D008273 3.6e-18 96.3 111 54.1
Pp3c15_25830 Physcomitrium patens HOM05D006936 ORTHO05D008273 4.7e-18 95.9 174 35.6
Ah.06g185850 Amaranthus hybridus HOM05D006936 ORTHO05D008273 7.0e-14 82.0 110 51.8
SEGI_32271 Sequoiadendron giganteum HOM05D006301 ORTHO05D008273 5.2e-09 65.9 58 53.4
AUR62015785 Chenopodium quinoa HOM05D000355 ORTHO05D000227 6.8e-09 65.5 110 43.6
DCAR_000990 Daucus carota HOM05D006936 ORTHO05D008273 4.9e-07 59.3 64 54.7


User provided reference genes

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