Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G0140 Fragaria x ananassa HOM05D003745 ORTHO05D004215 2.2e-45 185.3 95 100.0
FAN11G3796 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.1e-44 183.0 95 98.9
FvH4_3g29900 Fragaria vesca HOM05D003745 ORTHO05D004215 4.2e-44 181.0 95 97.9
FAN16G1639 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.8e-42 175.6 95 95.8
RcHm_v2.0_Chr5g0055241 Rosa chinensis HOM05D003745 ORTHO05D004215 7.7e-38 160.2 95 87.4
MD11G1157500 Malus domestica HOM05D003745 ORTHO05D004215 2.6e-25 118.6 96 65.6
Ciclev10029683m.g Citrus clementina HOM05D003745 ORTHO05D004215 1.6e-22 109.4 96 64.6
MD03G1134700 Malus domestica HOM05D003745 ORTHO05D004215 6.5e-21 104.0 96 57.3
QL01p013692 Quercus lobata HOM05D003745 ORTHO05D004215 6.5e-21 104.0 95 51.6
Dinv29425 Davidia involucrata HOM05D003745 ORTHO05D004215 8.5e-21 103.6 96 53.1
CiPaw.13G141100 Carya illinoinensis HOM05D003745 ORTHO05D004215 1.1e-20 103.2 97 56.7
Gohir.A09G093200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 3.2e-20 101.7 95 55.8
TWI75G0377 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 3.2e-20 101.7 96 55.2
GSVIVG01031398001 Vitis vinifera HOM05D003745 ORTHO05D004215 5.5e-20 100.9 90 56.7
Gohir.D09G093000 Gossypium hirsutum HOM05D003745 ORTHO05D004215 7.2e-20 100.5 95 54.7
Cfa010081 Carpinus fangiana HOM05D003745 ORTHO05D004215 3.6e-19 98.2 91 56.0
Thecc.09G291500 Theobroma cacao HOM05D003745 ORTHO05D004215 4.7e-19 97.8 96 54.2
Nn2g14004 Nelumbo nucifera HOM05D003745 ORTHO05D004215 8.0e-19 97.1 96 51.0
CiPaw.14G103500 Carya illinoinensis HOM05D003745 ORTHO05D004215 1.4e-18 96.3 97 53.6
Potri.004G188200 Populus trichocarpa HOM05D003745 ORTHO05D004215 1.4e-18 96.3 97 52.6
CSS0050359 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 5.2e-18 94.4 97 51.5
Ciclev10003706m.g Citrus clementina HOM05D003745 ORTHO05D004215 5.2e-18 94.4 96 50.0
Haze_23447 Corylus avellana HOM05D003745 ORTHO05D004215 6.8e-18 94.0 91 53.8
Gorai.006G109700 Gossypium raimondii HOM05D003745 ORTHO05D004215 6.8e-18 94.0 96 53.1
CSS0049961 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 1.2e-17 93.2 96 49.0
Glyma.13G319200 Glycine max HOM05D003745 ORTHO05D004215 2.6e-17 92.0 95 47.4
Dinv21253 Davidia involucrata HOM05D003745 ORTHO05D004215 3.4e-17 91.7 85 52.9
Manes.11G157100 Manihot esculenta HOM05D003745 ORTHO05D004215 4.4e-17 91.3 97 49.5
Glyma.12G181700 Glycine max HOM05D003745 ORTHO05D004215 5.7e-17 90.9 96 49.0
Duzib150G0771 Durio zibethinus HOM05D003745 ORTHO05D004215 7.5e-17 90.5 96 51.0
Duzib168G0884 Durio zibethinus HOM05D003745 ORTHO05D004215 7.5e-17 90.5 96 51.0
TAR633G1338 Trochodendron aralioides HOM05D003745 ORTHO05D004215 9.8e-17 90.1 64 64.1
vmacro03277 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 9.8e-17 90.1 93 53.8
vmacro23109 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 9.8e-17 90.1 93 53.8
Gohir.A07G107300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.7e-16 89.4 96 54.2
Gohir.D07G111300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.7e-16 89.4 96 53.1
TAR636G1780 Trochodendron aralioides HOM05D003745 ORTHO05D004215 1.7e-16 89.4 62 64.5
Dinv19830 Davidia involucrata HOM05D003745 ORTHO05D004215 2.8e-16 88.6 85 55.3
Potri.009G148900 Populus trichocarpa HOM05D003745 ORTHO05D004215 2.8e-16 88.6 96 55.2
Sabra04G0127200 Salix brachista HOM05D003745 ORTHO05D004215 2.8e-16 88.6 97 48.5
COL.COLO4_19298 Corchorus olitorius HOM05D003745 ORTHO05D004215 4.8e-16 87.8 96 52.1
QL07p040518 Quercus lobata HOM05D003745 ORTHO05D004215 8.3e-16 87.0 95 55.8
Thecc.05G081300 Theobroma cacao HOM05D003745 ORTHO05D004215 8.3e-16 87.0 95 50.5
CSS0006810 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 1.1e-15 86.7 96 47.9
Gorai.001G119600 Gossypium raimondii HOM05D003745 ORTHO05D004215 1.1e-15 86.7 96 52.1
Actinidia35448 Actinidia chinensis HOM05D003745 ORTHO05D004215 1.8e-15 85.9 97 51.5
Phvul.005G127200 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 4.1e-15 84.7 86 51.2
TWI79G1201 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 9.1e-15 83.6 96 49.0
TPR.G32386 Trifolium pratense HOM05D003745 ORTHO05D004215 1.2e-14 83.2 95 48.4
CiPaw.09G008800 Carya illinoinensis HOM05D003745 ORTHO05D004215 1.6e-14 82.8 98 51.0
Rhsim13G0105100 Rhododendron simsii HOM05D003745 ORTHO05D004215 1.6e-14 82.8 99 52.5
DCAR_006146 Daucus carota HOM05D003745 ORTHO05D004215 3.5e-14 81.6 86 54.7
Carub.0005s1042 Capsella rubella HOM05D003745 ORTHO05D004215 5.9e-14 80.9 88 51.1
Carub.0015s0003 Capsella rubella HOM05D003745 ORTHO05D004215 5.9e-14 80.9 88 51.1
Solyc11g066880.2 Solanum lycopersicum HOM05D003745 ORTHO05D004215 5.9e-14 80.9 87 51.7
Atru.chr8.1631 Acer truncatum HOM05D003745 ORTHO05D004215 7.7e-14 80.5 95 46.3
Lj3g0011252 Lotus japonicus HOM05D003745 ORTHO05D004215 1.0e-13 80.1 96 47.9
PSO339G5919 Papaver somniferum HOM05D003745 ORTHO05D004215 1.3e-13 79.7 92 47.8
SalBow6G4256 Salvia bowleyana HOM05D003745 ORTHO05D004215 1.7e-13 79.3 96 41.7
TAR369G1123 Trochodendron aralioides HOM05D003745 ORTHO05D004215 1.7e-13 79.3 85 48.2
AL5G22960 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 2.3e-13 79.0 88 45.5
CARHR151430 Cardamine hirsuta HOM05D003745 ORTHO05D004215 2.3e-13 79.0 88 47.7
Sabra09G0117500 Salix brachista HOM05D003745 ORTHO05D004215 2.3e-13 79.0 62 62.9
Actinidia24179 Actinidia chinensis HOM05D003745 ORTHO05D004215 2.9e-13 78.6 86 51.2
Sopen11g026590 Solanum pennellii HOM05D003745 ORTHO05D004215 2.9e-13 78.6 80 55.0
Actinidia07207 Actinidia chinensis HOM05D003745 ORTHO05D004215 3.8e-13 78.2 88 50.0
TPR.G5649 Trifolium pratense HOM05D003745 ORTHO05D004215 3.8e-13 78.2 86 48.8
PSO384G0932 Papaver somniferum HOM05D003745 ORTHO05D004215 5.0e-13 77.8 93 47.3
Aqoxy2G01397 Aquilegia oxysepala HOM05D003745 ORTHO05D004215 6.5e-13 77.4 45 75.6
Eucgr.B03895 Eucalyptus grandis HOM05D003745 ORTHO05D004215 8.6e-13 77.0 97 47.4
Peaxi162Scf00789g00618 Petunia axillaris HOM05D003745 ORTHO05D004215 1.1e-12 76.6 77 54.5
Atru.chr3.3378 Acer truncatum HOM05D003745 ORTHO05D004215 1.5e-12 76.3 83 53.0
Sc12g0004160 Simmondsia chinensis HOM05D003745 ORTHO05D004215 1.5e-12 76.3 92 45.7
vmacro07360 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 1.5e-12 76.3 86 46.5
Actinidia37099 Actinidia chinensis HOM05D003745 ORTHO05D004215 3.2e-12 75.1 98 48.0
Medtr2g084855 Medicago truncatula HOM05D003745 ORTHO05D004215 3.2e-12 75.1 96 42.7
Nn6g35042 Nelumbo nucifera HOM05D003745 ORTHO05D004215 3.2e-12 75.1 62 54.8
PGSC0003DMG400026535 Solanum tuberosum HOM05D003745 ORTHO05D004215 3.2e-12 75.1 87 49.4
THA.LOC104799535 Tarenaya hassleriana HOM05D003745 ORTHO05D004215 3.2e-12 75.1 93 44.1
Rhsim03G0081200 Rhododendron simsii HOM05D003745 ORTHO05D004215 4.2e-12 74.7 95 44.2
GSVIVG01033785001 Vitis vinifera HOM05D003745 ORTHO05D004215 4.2e-12 74.7 86 50.0
MSTRG.21061 Avicennia marina HOM05D003745 ORTHO05D004215 5.5e-12 74.3 96 44.8
Cc01_g09790 Coffea canephora HOM05D003745 ORTHO05D004215 7.2e-12 73.9 86 47.7
Oeu001652.1 Olea europaea HOM05D003745 ORTHO05D004215 7.2e-12 73.9 97 45.4
MD12G1018200 Malus domestica HOM05D003745 ORTHO05D004215 9.5e-12 73.6 92 47.8
Sp5g16440 Schrenkiella parvula HOM05D003745 ORTHO05D004215 9.5e-12 73.6 93 41.9
Actinidia11335 Actinidia chinensis HOM05D003745 ORTHO05D004215 1.2e-11 73.2 90 44.4
arahy.Tifrunner.gnm1.ann1.T88YYN Arachis hypogaea HOM05D003745 ORTHO05D004215 1.2e-11 73.2 82 47.6
Duzib106G0171 Durio zibethinus HOM05D003745 ORTHO05D004215 1.2e-11 73.2 87 48.3
Ciclev10013197m.g Citrus clementina HOM05D003745 ORTHO05D004215 1.6e-11 72.8 87 47.1
AT3G44735 Arabidopsis thaliana HOM05D003745 ORTHO05D004215 2.1e-11 72.4 85 47.1
Duzib128G0603 Durio zibethinus HOM05D003745 ORTHO05D004215 2.1e-11 72.4 85 49.4
Gohir.D01G198200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 2.1e-11 72.4 98 42.9
MSTRG.17729 Avicennia marina HOM05D003745 ORTHO05D004215 2.8e-11 72.0 94 43.6
ECA233G0462 Erigeron canadensis HOM05D003745 ORTHO05D004215 2.8e-11 72.0 87 46.0
Gorai.002G242400 Gossypium raimondii HOM05D003745 ORTHO05D004215 2.8e-11 72.0 98 42.9
MD14G1016200 Malus domestica HOM05D003745 ORTHO05D004215 2.8e-11 72.0 84 48.8
CAN.G644.31 Capsicum annuum HOM05D003745 ORTHO05D004215 3.6e-11 71.6 87 47.1
Lsat_1_v5_gn_6_41120 Lactuca sativa HOM05D003745 ORTHO05D004215 3.6e-11 71.6 53 69.8
Duzib093G0672 Durio zibethinus HOM05D003745 ORTHO05D004215 4.7e-11 71.2 42 73.8
Eucgr.A01541 Eucalyptus grandis HOM05D003745 ORTHO05D004215 4.7e-11 71.2 55 63.6
TWI77G0164 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 4.7e-11 71.2 86 52.3
Duzib106G0076 Durio zibethinus HOM05D003745 ORTHO05D004215 6.1e-11 70.9 95 43.2
Psat7g007360 Pisum sativum HOM05D003745 ORTHO05D004215 6.1e-11 70.9 89 48.3
Hund00782 Selenicereus undatus HOM05D003745 ORTHO05D004215 6.1e-11 70.9 104 42.3
arahy.Tifrunner.gnm1.ann1.X8LT49 Arachis hypogaea HOM05D003745 ORTHO05D004215 8.0e-11 70.5 82 46.3
FvH4_6g17920 Fragaria vesca HOM05D003745 ORTHO05D004215 8.0e-11 70.5 90 46.7
FAN14G5394 Fragaria x ananassa HOM05D003745 ORTHO05D004215 8.0e-11 70.5 90 46.7
Cpa.g.sc5.75 Carica papaya HOM05D003745 ORTHO05D004215 1.0e-10 70.1 86 45.3
FAN05G2107 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.0e-10 70.1 90 44.4
FAN05G2814 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.0e-10 70.1 90 44.4
C01p34270 Brassica napus HOM05D003745 ORTHO05D004215 1.4e-10 69.7 88 39.8
BolC1t03395H Brassica oleracea HOM05D003745 ORTHO05D004215 1.4e-10 69.7 88 39.8
CiPaw.10G005500 Carya illinoinensis HOM05D003745 ORTHO05D004215 1.4e-10 69.7 87 46.0
Medtr1g061120 Medicago truncatula HOM05D003745 ORTHO05D004215 1.4e-10 69.7 90 42.2
Glyma.10G066400 Glycine max HOM05D003745 ORTHO05D004215 1.8e-10 69.3 90 43.3
Gohir.A01G209100 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.8e-10 69.3 97 42.3
Oeu050182.1 Olea europaea HOM05D003745 ORTHO05D004215 1.8e-10 69.3 97 42.3
EL10Ac9g21084 Beta vulgaris HOM05D003745 ORTHO05D004215 2.3e-10 68.9 87 44.8
Migut.N02515 Erythranthe guttata HOM05D003745 ORTHO05D004215 2.3e-10 68.9 93 44.1
SalBow3G0913 Salvia bowleyana HOM05D003745 ORTHO05D004215 3.0e-10 68.6 95 44.2
Solyc06g074540.4 Solanum lycopersicum HOM05D003745 ORTHO05D004215 3.0e-10 68.6 81 49.4
CANSAT54G1542 Cannabis sativa HOM05D003745 ORTHO05D004215 5.2e-10 67.8 83 56.6
Lalb_Chr02g0155181 Lupinus albus HOM05D003745 ORTHO05D004215 5.2e-10 67.8 86 44.2
Lalb_Chr14g0374201 Lupinus albus HOM05D003745 ORTHO05D004215 5.2e-10 67.8 95 38.9
Sopen06g031010 Solanum pennellii HOM05D003745 ORTHO05D004215 5.2e-10 67.8 81 49.4
Cc06_g05290 Coffea canephora HOM05D003745 ORTHO05D004215 6.8e-10 67.4 87 43.7
Thhalv10002908m.g Eutrema salsugineum HOM05D003745 ORTHO05D004215 6.8e-10 67.4 46 60.9
PGR102G0577 Punica granatum HOM05D003745 ORTHO05D004215 6.8e-10 67.4 103 44.7
Glyma.13G151500 Glycine max HOM05D003745 ORTHO05D004215 8.8e-10 67.0 84 42.9
PSO063G0377 Papaver somniferum HOM05D003745 ORTHO05D004215 8.8e-10 67.0 101 41.6
Manes.09G058940 Manihot esculenta HOM05D003745 ORTHO05D004215 1.2e-09 66.6 96 46.9
Prupe.7G116900 Prunus persica HOM05D003745 ORTHO05D004215 1.2e-09 66.6 95 46.3
CAN.G919.7 Capsicum annuum HOM05D003745 ORTHO05D004215 1.5e-09 66.2 96 44.8
PGSC0003DMG400007123 Solanum tuberosum HOM05D003745 ORTHO05D004215 2.0e-09 65.9 85 47.1
Lj5g0022060 Lotus japonicus HOM05D003745 ORTHO05D004215 2.6e-09 65.5 90 42.2
Peaxi162Scf00157g00066 Petunia axillaris HOM05D003745 ORTHO05D004215 2.6e-09 65.5 87 47.1
PGSC0003DMG400028173 Solanum tuberosum HOM05D003745 ORTHO05D004215 2.6e-09 65.5 91 40.7
vmacro23105 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 2.6e-09 65.5 65 58.5
CANSAT80G1673 Cannabis sativa HOM05D003745 ORTHO05D004215 3.4e-09 65.1 77 44.2
Gohir.A04G066114 Gossypium hirsutum HOM05D003745 ORTHO05D004215 3.4e-09 65.1 65 50.8
HanXRQChr13g0396991 Helianthus annuus HOM05D003745 ORTHO05D004215 3.4e-09 65.1 102 43.1
Nitab4.5_0000663g0130 Nicotiana tabacum HOM05D003745 ORTHO05D004215 5.7e-09 64.3 81 43.2
PGR004G1125 Punica granatum HOM05D003745 ORTHO05D004215 5.7e-09 64.3 46 65.2
Thhalv10015130m.g Eutrema salsugineum HOM05D003745 ORTHO05D004215 9.8e-09 63.5 87 44.8
Manes.08G021100 Manihot esculenta HOM05D003745 ORTHO05D004215 9.8e-09 63.5 43 67.4
Sc12g0004180 Simmondsia chinensis HOM05D003745 ORTHO05D004215 9.8e-09 63.5 61 50.8
PGSC0003DMG400002682 Solanum tuberosum HOM05D003745 ORTHO05D004215 9.8e-09 63.5 82 45.1
PSO339G1716 Papaver somniferum HOM05D003745 ORTHO05D004215 1.3e-08 63.2 101 42.6
RcHm_v2.0_Chr3g0472171 Rosa chinensis HOM05D003745 ORTHO05D004215 1.3e-08 63.2 90 42.2
BraA01t02615Z Brassica rapa HOM05D003745 ORTHO05D004215 1.7e-08 62.8 88 38.6
Peaxi162Scf00433g00025 Petunia axillaris HOM05D003745 ORTHO05D004215 1.7e-08 62.8 80 46.2
TWI74G0799 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 1.7e-08 62.8 87 47.1
FAN09G1254 Fragaria x ananassa HOM05D003745 ORTHO05D004215 2.2e-08 62.4 90 42.2
Phvul.007G223101 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 2.2e-08 62.4 90 40.0
FAN02G0871 Fragaria x ananassa HOM05D003745 ORTHO05D004215 2.8e-08 62.0 36 75.0
Lalb_Chr22g0350641 Lupinus albus HOM05D003745 ORTHO05D004215 2.8e-08 62.0 96 38.5
Gohir.A01G209200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 4.9e-08 61.2 85 42.4
Gohir.D01G198300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 4.9e-08 61.2 85 43.5
Solyc10g083580.2 Solanum lycopersicum HOM05D003745 ORTHO05D004215 6.3e-08 60.8 91 39.6
arahy.Tifrunner.gnm1.ann1.AP4865 Arachis hypogaea HOM05D003745 ORTHO05D004215 8.3e-08 60.5 90 43.3
arahy.Tifrunner.gnm1.ann1.NCX3KP Arachis hypogaea HOM05D003745 ORTHO05D004215 8.3e-08 60.5 90 43.3
Nitab4.5_0000132g0150 Nicotiana tabacum HOM05D003745 ORTHO05D004215 8.3e-08 60.5 36 72.2
Nitab4.5_0010833g0010 Nicotiana tabacum HOM05D003745 ORTHO05D004215 1.1e-07 60.1 87 41.4
Rhsim01G0208400 Rhododendron simsii HOM05D003745 ORTHO05D004215 1.1e-07 60.1 45 66.7
Sopen10g033060 Solanum pennellii HOM05D003745 ORTHO05D004215 1.1e-07 60.1 91 40.7
A10p32390 Brassica napus HOM05D003745 ORTHO05D004215 1.4e-07 59.7 43 62.8
BraA10t45279Z Brassica rapa HOM05D003745 ORTHO05D004215 1.4e-07 59.7 43 62.8
Nitab4.5_0006360g0020 Nicotiana tabacum HOM05D003745 ORTHO05D004215 2.4e-07 58.9 82 41.5
SalBow3G0501 Salvia bowleyana HOM05D003745 ORTHO05D004215 2.4e-07 58.9 85 41.2
Ah.08g210930 Amaranthus hybridus HOM05D040036 ORTHO05D004215 3.1e-07 58.5 98 41.8
AL6G13230 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 3.1e-07 58.5 91 41.8
C09p73210 Brassica napus HOM05D003745 ORTHO05D004215 3.1e-07 58.5 95 38.9
BolC9t60056H Brassica oleracea HOM05D003745 ORTHO05D004215 3.1e-07 58.5 95 38.9
Sopen09g003840 Solanum pennellii HOM05D003745 ORTHO05D004215 3.1e-07 58.5 78 44.9
Sp6g39010 Schrenkiella parvula HOM05D003745 ORTHO05D004215 5.4e-07 57.8 44 59.1
Peaxi162Scf00110g02023 Petunia axillaris HOM05D003745 ORTHO05D004215 7.0e-07 57.4 36 69.4
ATR0820G192 Amborella trichopoda HOM05D003745 ORTHO05D004215 1.6e-06 56.2 91 42.9
A01p26850 Brassica napus HOM05D003745 ORTHO05D004215 1.6e-06 56.2 34 70.6
Carub.0006s0262 Capsella rubella HOM05D003745 ORTHO05D004215 1.6e-06 56.2 88 43.2
CARHR209590 Cardamine hirsuta HOM05D003745 ORTHO05D004215 1.6e-06 56.2 44 59.1
Gorai.002G242500 Gossypium raimondii HOM05D003745 ORTHO05D004215 2.0e-06 55.8 94 40.4
Oeu040536.1 Olea europaea HOM05D003745 ORTHO05D004215 2.7e-06 55.5 87 36.8


User provided reference genes

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