Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G0115 Fragaria x ananassa HOM05D000316 ORTHO05D001978 8.9e-34 146.4 74 100.0
FvH4_2g28760 Fragaria vesca HOM05D000316 ORTHO05D001978 2.4e-23 111.7 69 85.5
FAN15G3703 Fragaria x ananassa HOM05D000316 ORTHO05D001978 2.4e-23 111.7 69 85.5
FAN24G0952 Fragaria x ananassa HOM05D000316 ORTHO05D001978 2.4e-23 111.7 69 85.5
FAN27G0690 Fragaria x ananassa HOM05D000316 ORTHO05D001978 2.4e-23 111.7 69 85.5
FAN20G1700 Fragaria x ananassa HOM05D000316 ORTHO05D001978 2.7e-22 108.2 69 84.1
Prupe.1G483700 Prunus persica HOM05D000316 ORTHO05D001978 3.6e-19 97.8 68 77.9
FAN26G0798 Fragaria x ananassa HOM05D000316 ORTHO05D203482 8.1e-19 96.7 54 88.9
RcHm_v2.0_Chr6g0297521 Rosa chinensis HOM05D000316 ORTHO05D001978 8.1e-19 96.7 69 76.8
MD15G1128400 Malus domestica HOM05D000316 ORTHO05D001978 4.0e-18 94.4 68 75.0
MD08G1157300 Malus domestica HOM05D000316 ORTHO05D001978 5.3e-18 94.0 68 76.5
CANSAT25G1966 Cannabis sativa HOM05D000316 ORTHO05D001978 6.9e-18 93.6 69 73.9
CiPaw.08G009600 Carya illinoinensis HOM05D000316 ORTHO05D001978 3.8e-16 87.8 71 70.4
MELO3C011273.2 Cucumis melo HOM05D000316 ORTHO05D001978 3.8e-16 87.8 72 68.1
Dinv18197 Davidia involucrata HOM05D000316 ORTHO05D001978 3.8e-16 87.8 70 71.4
ClCG08G013460 Citrullus lanatus HOM05D000316 ORTHO05D001978 4.9e-16 87.4 72 68.1
CsaV3_2G032210 Cucumis sativus L. HOM05D000316 ORTHO05D001978 4.9e-16 87.4 72 68.1
Sc09g0010280 Simmondsia chinensis HOM05D000316 ORTHO05D001978 4.9e-16 87.4 70 70.0
ECA233G5357 Erigeron canadensis HOM05D000316 ORTHO05D001978 8.4e-16 86.7 69 68.1
Migut.A00021 Erythranthe guttata HOM05D000316 ORTHO05D001978 1.1e-15 86.3 75 62.7
Rhsim07G0160600 Rhododendron simsii HOM05D000316 ORTHO05D001978 1.1e-15 86.3 70 70.0
Sc23g0006650 Simmondsia chinensis HOM05D000316 ORTHO05D001978 1.1e-15 86.3 70 70.0
Actinidia14590 Actinidia chinensis HOM05D000316 ORTHO05D001978 1.4e-15 85.9 70 70.0
Dinv05010 Davidia involucrata HOM05D000316 ORTHO05D001978 1.4e-15 85.9 69 68.1
Cpa.g.sc187.4 Carica papaya HOM05D000316 ORTHO05D001978 1.9e-15 85.5 70 70.0
CiPaw.07G225500 Carya illinoinensis HOM05D000316 ORTHO05D001978 1.9e-15 85.5 71 67.6
Haze_21488 Corylus avellana HOM05D001612 ORTHO05D002104 1.9e-15 85.5 71 67.6
COL.COLO4_18885 Corchorus olitorius HOM05D000316 ORTHO05D001978 2.4e-15 85.1 69 68.1
Thecc.09G021400 Theobroma cacao HOM05D000316 ORTHO05D001978 2.4e-15 85.1 69 68.1
Atru.chr7.2467 Acer truncatum HOM05D000316 ORTHO05D001978 3.2e-15 84.7 69 66.7
Ciclev10008816m.g Citrus clementina HOM05D000316 ORTHO05D001978 3.2e-15 84.7 69 69.6
SGA_v2.0_scaffold20G09099 Striga asiatica HOM05D000316 ORTHO05D001978 3.2e-15 84.7 70 67.1
SGA_v2.0_scaffold254G45215 Striga asiatica HOM05D000316 ORTHO05D001978 3.2e-15 84.7 70 67.1
Sed0009444 Sechium edule HOM05D000316 ORTHO05D001978 4.2e-15 84.3 71 70.4
CSS0019323 Camellia sinensis var. sinensis HOM05D000316 ORTHO05D001978 5.4e-15 84.0 70 68.6
CSS0037842 Camellia sinensis var. sinensis HOM05D000316 ORTHO05D001978 5.4e-15 84.0 70 68.6
Eucgr.C01711 Eucalyptus grandis HOM05D000316 ORTHO05D001978 5.4e-15 84.0 70 65.7
Lj7A726G24 Lonicera japonica HOM05D000316 ORTHO05D001978 5.4e-15 84.0 70 68.6
QL02p021072 Quercus lobata HOM05D000316 ORTHO05D001978 5.4e-15 84.0 71 66.2
EL10Ac2g04184 Beta vulgaris HOM05D000316 ORTHO05D001978 7.1e-15 83.6 69 65.2
Oeu053106.2 Olea europaea HOM05D000316 ORTHO05D001978 7.1e-15 83.6 71 66.2
Potri.006G257200 Populus trichocarpa HOM05D000316 ORTHO05D001978 9.3e-15 83.2 70 67.1
Oeu012287.1 Olea europaea HOM05D000316 ORTHO05D001978 1.2e-14 82.8 71 64.8
TAR383G0145 Trochodendron aralioides HOM05D000316 ORTHO05D001978 1.2e-14 82.8 70 68.6
Gohir.A06G099300 Gossypium hirsutum HOM05D000316 ORTHO05D001978 2.1e-14 82.0 70 68.6
Solyc08g029170.3 Solanum lycopersicum HOM05D000316 ORTHO05D001978 2.7e-14 81.6 70 62.9
Sopen08g010080 Solanum pennellii HOM05D000316 ORTHO05D001978 3.5e-14 81.3 70 62.9
GSVIVG01035952001 Vitis vinifera HOM05D000316 ORTHO05D001978 3.5e-14 81.3 75 64.0
Duzib168G2356 Durio zibethinus HOM05D000316 ORTHO05D001978 4.6e-14 80.9 70 67.1
Gohir.D06G101500 Gossypium hirsutum HOM05D000316 ORTHO05D001978 4.6e-14 80.9 70 67.1
Gorai.010G116400 Gossypium raimondii HOM05D000316 ORTHO05D001978 4.6e-14 80.9 70 67.1
Manes.03G012800 Manihot esculenta HOM05D000316 ORTHO05D001978 4.6e-14 80.9 69 68.1
Sed0022062 Sechium edule HOM05D000316 ORTHO05D001978 4.6e-14 80.9 71 66.2
vmacro05162 Vaccinium macrocarpon HOM05D000316 ORTHO05D001978 4.6e-14 80.9 70 64.3
Nitab4.5_0003389g0020 Nicotiana tabacum HOM05D000316 ORTHO05D001978 6.0e-14 80.5 70 62.9
Ca_13035_v3 Cicer arietinum L. HOM05D000467 ORTHO05D001978 7.9e-14 80.1 70 67.1
Sabra06G0201300 Salix brachista HOM05D000316 ORTHO05D001978 7.9e-14 80.1 69 63.8
TPR.G14034 Trifolium pratense HOM05D000316 ORTHO05D001978 7.9e-14 80.1 68 63.2
Ah.16g104710 Amaranthus hybridus HOM05D000316 ORTHO05D001978 1.0e-13 79.7 69 62.3
Nn8g39594 Nelumbo nucifera HOM05D000316 ORTHO05D001978 1.0e-13 79.7 69 63.8
Glyma.17G212500 Glycine max HOM05D000316 ORTHO05D001978 1.3e-13 79.3 69 62.3
Phvul.001G049900 Phaseolus vulgaris HOM05D000316 ORTHO05D001978 1.3e-13 79.3 69 63.8
Psat6g027920 Pisum sativum HOM05D000316 ORTHO05D001978 1.3e-13 79.3 69 62.3
Hund10963 Selenicereus undatus HOM05D000316 ORTHO05D001978 1.3e-13 79.3 68 63.2
MSTRG.1730 Avicennia marina HOM05D000316 ORTHO05D001978 1.8e-13 79.0 69 60.9
Hma1.2p1_1416F.1_g282060 Hydrangea macrophylla HOM05D000316 ORTHO05D001978 1.8e-13 79.0 70 64.3
Potri.018G024500 Populus trichocarpa HOM05D000316 ORTHO05D001978 1.8e-13 79.0 70 64.3
HanXRQChr01g0030601 Helianthus annuus HOM05D000316 ORTHO05D001978 2.3e-13 78.6 69 65.2
Lj5g0000071 Lotus japonicus HOM05D000316 ORTHO05D001978 2.3e-13 78.6 70 64.3
Medtr1g012800 Medicago truncatula HOM05D000316 ORTHO05D001978 2.3e-13 78.6 69 62.3
Nitab4.5_0006784g0010 Nicotiana tabacum HOM05D000316 ORTHO05D001978 2.3e-13 78.6 70 61.4
PSO210G2916 Papaver somniferum HOM05D000316 ORTHO05D001978 2.3e-13 78.6 67 61.2
PSO210G4893 Papaver somniferum HOM05D000316 ORTHO05D001978 2.3e-13 78.6 67 61.2
CANSAT80G0900 Cannabis sativa HOM05D000316 ORTHO05D001978 3.0e-13 78.2 71 62.0
CANSAT80G1541 Cannabis sativa HOM05D000316 ORTHO05D001978 3.0e-13 78.2 71 62.0
Glyma.14G113900 Glycine max HOM05D000316 ORTHO05D001978 3.0e-13 78.2 69 62.3
Gorai.004G292900 Gossypium raimondii HOM05D000316 ORTHO05D001978 3.0e-13 78.2 70 64.3
Peaxi162Scf00136g01214 Petunia axillaris HOM05D000316 ORTHO05D001978 3.0e-13 78.2 70 61.4
VMungo0647G1777 Vigna mungo HOM05D000316 ORTHO05D001978 3.0e-13 78.2 69 62.3
AUR62012427 Chenopodium quinoa HOM05D000316 ORTHO05D001978 3.9e-13 77.8 69 62.3
Gohir.A08G252800 Gossypium hirsutum HOM05D000316 ORTHO05D001978 3.9e-13 77.8 70 62.9
Cc08_g00400 Coffea canephora HOM05D000316 ORTHO05D001978 6.7e-13 77.0 72 61.1
Gohir.D08G274400 Gossypium hirsutum HOM05D000316 ORTHO05D001978 6.7e-13 77.0 71 63.4
Lsat_1_v5_gn_6_20300 Lactuca sativa HOM05D000316 ORTHO05D001978 8.7e-13 76.6 69 60.9
CAN.G16.14 Capsicum annuum HOM05D000316 ORTHO05D001978 1.1e-12 76.3 70 58.6
THA.LOC104803847 Tarenaya hassleriana HOM05D000316 ORTHO05D001978 1.1e-12 76.3 70 61.4
Aa31LG2G17840 Aethionema arabicum HOM05D000316 ORTHO05D001978 1.9e-12 75.5 70 64.3
Aqoxy6G02073 Aquilegia oxysepala HOM05D000316 ORTHO05D001978 1.9e-12 75.5 69 60.9
AL7G19740 Arabidopsis lyrata HOM05D000316 ORTHO05D001978 2.5e-12 75.1 70 64.3
arahy.Tifrunner.gnm1.ann1.LG83KY Arachis hypogaea HOM05D000316 ORTHO05D001978 2.5e-12 75.1 69 58.0
arahy.Tifrunner.gnm1.ann1.XB17NQ Arachis hypogaea HOM05D000316 ORTHO05D001978 2.5e-12 75.1 69 58.0
Gohir.D06G113400 Gossypium hirsutum HOM05D000316 ORTHO05D001978 2.5e-12 75.1 71 60.6
HanXRQChr02g0050331 Helianthus annuus HOM05D000316 ORTHO05D001978 2.5e-12 75.1 70 60.0
Thhalv10025629m.g Eutrema salsugineum HOM05D000316 ORTHO05D001978 3.3e-12 74.7 70 62.9
Carub.0007s0844 Capsella rubella HOM05D000316 ORTHO05D001978 4.3e-12 74.3 70 62.9
ATR0767G141 Amborella trichopoda HOM05D000316 ORTHO05D001978 5.6e-12 73.9 69 58.0
Thhalv10000224m.g Eutrema salsugineum HOM05D000316 ORTHO05D001978 5.6e-12 73.9 70 61.4
Aa31LG2G17860 Aethionema arabicum HOM05D000316 ORTHO05D001978 9.6e-12 73.2 70 62.9
Lsat_1_v5_gn_1_43720 Lactuca sativa HOM05D000316 ORTHO05D001978 9.6e-12 73.2 69 60.9
Sp7g29910 Schrenkiella parvula HOM05D000316 ORTHO05D001978 9.6e-12 73.2 70 62.9
AT4G32120 Arabidopsis thaliana HOM05D000316 ORTHO05D001978 1.3e-11 72.8 70 62.9
HPP92_000479 Vanilla planifolia HOM05D000316 ORTHO05D001978 1.3e-11 72.8 66 62.1
AT2G25300 Arabidopsis thaliana HOM05D000316 ORTHO05D001978 2.1e-11 72.0 69 59.4
Sp4g04390 Schrenkiella parvula HOM05D000316 ORTHO05D001978 2.1e-11 72.0 71 60.6
Carub.0004s0493 Capsella rubella HOM05D000316 ORTHO05D001978 2.8e-11 71.6 70 58.6
Lalb_Chr14g0361851 Lupinus albus HOM05D000316 ORTHO05D001978 3.7e-11 71.2 73 57.5
Zm00001eb375130 Zea mays HOM05D000316 ORTHO05D001978 3.7e-11 71.2 69 62.3
DCAR_001548 Daucus carota HOM05D000316 ORTHO05D001978 4.8e-11 70.9 70 60.0
Migut.E01811 Erythranthe guttata HOM05D000316 ORTHO05D001978 4.8e-11 70.9 69 58.0
TWI34G1856 Tripterygium wilfordii HOM05D000316 ORTHO05D001978 4.8e-11 70.9 47 78.7
TWI63G0542 Tripterygium wilfordii HOM05D000316 ORTHO05D001978 4.8e-11 70.9 47 80.9
A01p06180 Brassica napus HOM05D000316 ORTHO05D001978 6.2e-11 70.5 81 54.3
BolC1t00679H Brassica oleracea HOM05D000316 ORTHO05D001978 6.2e-11 70.5 70 58.6
SHI18529 Sapria himalayana HOM05D000316 ORTHO05D001978 6.2e-11 70.5 71 54.9
BcaC07g40872 Brassica carinata HOM05D000316 ORTHO05D001978 8.1e-11 70.1 69 58.0
C08p38710 Brassica napus HOM05D000316 ORTHO05D001978 8.1e-11 70.1 69 58.0
BolC8t51441H Brassica oleracea HOM05D000316 ORTHO05D001978 8.1e-11 70.1 69 58.0
BraA01t00586Z Brassica rapa HOM05D000316 ORTHO05D001978 8.1e-11 70.1 70 58.6
MBI14_g41409_MAGBIO Magnolia biondii HOM05D000316 ORTHO05D001978 8.1e-11 70.1 70 55.7
A09p55710 Brassica napus HOM05D000316 ORTHO05D001978 1.1e-10 69.7 71 59.2
C01p06810 Brassica napus HOM05D000316 ORTHO05D001978 1.1e-10 69.7 71 57.7
BraA09t40972Z Brassica rapa HOM05D000316 ORTHO05D001978 1.1e-10 69.7 71 59.2
BcaB08g35174 Brassica carinata HOM05D000316 ORTHO05D001978 1.8e-10 68.9 69 56.5
CARHR116220 Cardamine hirsuta HOM05D000316 ORTHO05D001978 2.4e-10 68.6 69 55.1
BcaC09g51999 Brassica carinata HOM05D000316 ORTHO05D001978 5.3e-10 67.4 71 57.7
AL4G16660 Arabidopsis lyrata HOM05D000316 ORTHO05D001978 6.9e-10 67.0 70 58.6
AUR62031550 Chenopodium quinoa HOM05D000316 ORTHO05D001978 1.2e-09 66.2 109 42.2
Os06g0176200 Oryza sativa ssp. japonica HOM05D000316 ORTHO05D001978 2.0e-09 65.5 68 58.8
Os06g0177300 Oryza sativa ssp. japonica HOM05D000316 ORTHO05D001978 2.0e-09 65.5 68 58.8
unitig_37.g12960 Utricularia gibba HOM05D000316 ORTHO05D001978 1.4e-07 59.3 69 49.3
SEGI_27188 Sequoiadendron giganteum HOM05D000316 ORTHO05D001978 1.6e-06 55.8 64 46.9


User provided reference genes

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