Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G0088 Fragaria x ananassa HOM05D004150 ORTHO05D005087 4.2e-278 960.7 472 100.0
FvH4_3g17970 Fragaria vesca HOM05D004150 ORTHO05D005087 7.7e-272 939.9 473 97.9
FAN25G1025 Fragaria x ananassa HOM05D004150 ORTHO05D005087 5.2e-268 927.2 511 90.8
FAN16G0401 Fragaria x ananassa HOM05D004150 ORTHO05D005087 5.7e-267 923.7 509 91.2
FAN11G2611 Fragaria x ananassa HOM05D004150 ORTHO05D005087 1.7e-263 912.1 492 93.1
RcHm_v2.0_Chr5g0030011 Rosa chinensis HOM05D004150 ORTHO05D005087 5.2e-252 874.0 475 91.2
MD03G1246300 Malus domestica HOM05D004150 ORTHO05D005087 1.2e-224 783.1 479 80.2
MD11G1267300 Malus domestica HOM05D004150 ORTHO05D005087 3.7e-218 761.5 479 78.1
Cfa019528 Carpinus fangiana HOM05D004150 ORTHO05D005087 1.2e-216 756.5 478 78.0
CANSAT56G2087 Cannabis sativa HOM05D004150 ORTHO05D005087 1.8e-212 742.7 480 76.5
CiPaw.11G157600 Carya illinoinensis HOM05D004150 ORTHO05D005087 1.3e-207 726.5 478 74.9
Hma1.2p1_2701F.1_g327060 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 3.6e-205 718.4 476 74.2
Manes.03G091700 Manihot esculenta HOM05D004150 ORTHO05D005087 8.1e-205 717.2 479 75.4
PGR083G0816 Punica granatum HOM05D004150 ORTHO05D005087 4.0e-204 714.9 480 72.9
Atru.chr2.2041 Acer truncatum HOM05D004150 ORTHO05D005087 5.2e-204 714.5 479 75.6
Atru.chr2.2029 Acer truncatum HOM05D004150 ORTHO05D005087 9.0e-204 713.8 479 75.6
Glyma.13G266400 Glycine max HOM05D004150 ORTHO05D005087 4.4e-203 711.4 478 74.5
Glyma.12G231700 Glycine max HOM05D004150 ORTHO05D005087 9.9e-203 710.3 480 75.0
Gohir.A01G052900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 9.9e-203 710.3 478 74.1
Phvul.005G079200 Phaseolus vulgaris HOM05D004150 ORTHO05D005087 1.3e-202 709.9 482 74.5
CSS0001873 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 1.7e-202 709.5 479 71.6
TWI38G0344 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 1.7e-202 709.5 481 73.8
Gorai.002G053300 Gossypium raimondii HOM05D004150 ORTHO05D005087 2.2e-202 709.1 479 74.3
VMungo1080G1533 Vigna mungo HOM05D004150 ORTHO05D005087 2.9e-202 708.8 482 73.9
Thecc.07G119700 Theobroma cacao HOM05D004150 ORTHO05D005087 4.9e-202 708.0 478 73.6
GSVIVG01014152001 Vitis vinifera HOM05D004150 ORTHO05D005087 4.2e-201 704.9 476 73.7
Gohir.D01G042500 Gossypium hirsutum HOM05D004150 ORTHO05D005087 5.4e-201 704.5 479 73.9
Potri.003G026500 Populus trichocarpa HOM05D004150 ORTHO05D005087 9.3e-201 703.7 479 73.1
CSS0042666 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 1.3e-199 699.9 482 72.0
Potri.011G106600 Populus trichocarpa HOM05D004150 ORTHO05D005087 3.0e-199 698.7 482 72.0
Eucgr.F01300 Eucalyptus grandis HOM05D004150 ORTHO05D005087 5.1e-199 698.0 481 71.7
Manes.15G097400 Manihot esculenta HOM05D004150 ORTHO05D005087 6.6e-199 697.6 478 72.8
CsaV3_4G032910 Cucumis sativus L. HOM05D004150 ORTHO05D005087 8.7e-199 697.2 477 71.1
Cc05_g10890 Coffea canephora HOM05D004150 ORTHO05D005087 5.6e-198 694.5 476 72.5
COL.COLO4_17523 Corchorus olitorius HOM05D004150 ORTHO05D005087 9.6e-198 693.7 478 72.6
Psat5g234480 Pisum sativum HOM05D004150 ORTHO05D005087 1.6e-197 693.0 481 73.0
Gohir.A13G149900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 3.6e-197 691.8 477 72.5
Ca_03941_v3 Cicer arietinum L. HOM05D004150 ORTHO05D005087 1.8e-196 689.5 484 71.9
Ciclev10019972m.g Citrus clementina HOM05D004150 ORTHO05D005087 1.8e-196 689.5 482 72.4
Medtr2g075340 Medicago truncatula HOM05D004150 ORTHO05D005087 4.5e-195 684.9 472 71.6
TWI39G0561 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 5.8e-195 684.5 481 69.9
Nn6g34456 Nelumbo nucifera HOM05D004150 ORTHO05D005087 2.9e-194 682.2 476 70.2
MBI06_g16571_MAGBIO Magnolia biondii HOM05D004150 ORTHO05D005087 8.4e-194 680.6 477 70.4
Sc03g0010640 Simmondsia chinensis HOM05D004150 ORTHO05D005087 5.4e-193 677.9 483 70.2
Lj3g0004524 Lotus japonicus HOM05D004150 ORTHO05D005087 1.2e-192 676.8 491 71.7
THA.LOC104815577 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 1.6e-192 676.4 480 69.2
Lsat_1_v5_gn_9_100501 Lactuca sativa HOM05D004150 ORTHO05D005087 3.9e-191 671.8 481 69.6
MELO3C025660.2 Cucumis melo HOM05D004150 ORTHO05D005087 3.3e-190 668.7 493 67.5
Lj1A826G61 Lonicera japonica HOM05D004150 ORTHO05D005087 3.3e-190 668.7 485 68.7
THA.LOC104810428 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 7.4e-190 667.5 480 68.5
HanXRQChr10g0305531 Helianthus annuus HOM05D004150 ORTHO05D005087 2.1e-189 666.0 483 68.5
ClCG11G017260 Citrullus lanatus HOM05D004150 ORTHO05D005087 4.8e-189 664.8 545 62.8
PSO170G1443 Papaver somniferum HOM05D004150 ORTHO05D005087 9.0e-188 660.6 484 68.0
Aqoxy1G01964 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 2.6e-187 659.1 479 68.3
EL10Ac4g08396 Beta vulgaris HOM05D004150 ORTHO05D005087 2.6e-187 659.1 487 66.3
Oeu058459.1 Olea europaea HOM05D004150 ORTHO05D005087 1.7e-186 656.4 480 67.3
Lalb_Chr25g0285681 Lupinus albus HOM05D004150 ORTHO05D005087 2.9e-186 655.6 483 68.5
PSO782G0021 Papaver somniferum HOM05D004150 ORTHO05D005087 4.9e-186 654.8 484 67.6
Oeu010027.3 Olea europaea HOM05D004150 ORTHO05D005087 6.4e-186 654.4 502 64.9
Sabra16G0254300 Salix brachista HOM05D004150 ORTHO05D005087 8.4e-186 654.1 528 64.6
Lalb_Chr19g0133751 Lupinus albus HOM05D004150 ORTHO05D005087 7.1e-185 651.0 482 69.3
Prupe.4G158300 Prunus persica HOM05D004150 ORTHO05D005087 7.1e-185 651.0 407 80.6
HanXRQChr17g0556791 Helianthus annuus HOM05D004150 ORTHO05D005087 1.6e-184 649.8 474 67.7
CAN.G375.32 Capsicum annuum HOM05D004150 ORTHO05D005087 1.3e-183 646.7 521 62.8
PGSC0003DMG400007094 Solanum tuberosum HOM05D004150 ORTHO05D005087 3.9e-183 645.2 519 63.4
AL3G27140 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 5.1e-183 644.8 482 66.8
Sopen07g030520 Solanum pennellii HOM05D004150 ORTHO05D005087 5.1e-183 644.8 519 63.2
Solyc07g062250.3 Solanum lycopersicum HOM05D004150 ORTHO05D005087 6.7e-183 644.4 519 63.2
Aa31LG8G2040 Aethionema arabicum HOM05D004150 ORTHO05D005087 7.4e-182 641.0 477 66.0
AT3G14830 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 1.3e-181 640.2 483 65.8
MSTRG.14976 Avicennia marina HOM05D004150 ORTHO05D005087 6.2e-181 637.9 477 66.7
Rhsim04G0036400 Rhododendron simsii HOM05D004150 ORTHO05D005087 1.1e-180 637.1 483 67.3
Rhsim04G0035400 Rhododendron simsii HOM05D004150 ORTHO05D005087 1.4e-180 636.7 483 67.5
Actinidia12595 Actinidia chinensis HOM05D004150 ORTHO05D005087 3.1e-180 635.6 537 60.9
Sp1g39990 Schrenkiella parvula HOM05D004150 ORTHO05D005087 6.9e-180 634.4 473 65.5
TAR629G2423 Trochodendron aralioides HOM05D004150 ORTHO05D005087 1.5e-179 633.3 436 71.1
Thhalv10011465m.g Eutrema salsugineum HOM05D004150 ORTHO05D005087 4.5e-179 631.7 473 65.8
vmacro09408 Vaccinium macrocarpon HOM05D004150 ORTHO05D005087 4.5e-179 631.7 488 66.0
Gohir.D13G154200 Gossypium hirsutum HOM05D004150 ORTHO05D005087 7.6e-179 630.9 436 72.0
CARHR089770 Cardamine hirsuta HOM05D004150 ORTHO05D005087 2.2e-178 629.4 482 65.6
TPR.G13030 Trifolium pratense HOM05D004150 ORTHO05D005087 1.1e-177 627.1 481 68.0
Sed0003063 Sechium edule HOM05D004150 ORTHO05D005087 2.5e-177 625.9 439 71.5
Nitab4.5_0000347g0180 Nicotiana tabacum HOM05D004150 ORTHO05D005087 7.1e-177 624.4 519 62.2
Peaxi162Scf00111g01477 Petunia axillaris HOM05D004150 ORTHO05D005087 1.6e-176 623.2 520 61.0
ECA234G0958 Erigeron canadensis HOM05D004150 ORTHO05D005087 4.6e-176 621.7 482 66.4
CARHR043670 Cardamine hirsuta HOM05D004150 ORTHO05D005087 6.0e-176 621.3 473 66.2
Lalb_Chr03g0031251 Lupinus albus HOM05D004150 ORTHO05D005087 1.8e-175 619.8 481 65.1
Actinidia21439 Actinidia chinensis HOM05D004150 ORTHO05D005087 3.0e-175 619.0 481 65.5
SGA_v2.0_scaffold130G34274 Striga asiatica HOM05D004150 ORTHO05D005087 6.3e-173 611.3 504 62.9
Carub.0001s4264 Capsella rubella HOM05D004150 ORTHO05D005087 6.9e-172 607.8 473 63.6
Gorai.013G174200 Gossypium raimondii HOM05D004150 ORTHO05D005087 7.6e-171 604.4 488 64.1
AT1G53450 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 1.3e-170 603.6 474 63.7
Carub.0003s1449 Capsella rubella HOM05D004150 ORTHO05D005087 1.3e-170 603.6 485 63.7
BolC5t33929H Brassica oleracea HOM05D004150 ORTHO05D005087 2.9e-170 602.4 478 63.4
A06p01010 Brassica napus HOM05D004150 ORTHO05D005087 5.0e-170 601.7 476 63.9
C05p52450 Brassica napus HOM05D004150 ORTHO05D005087 1.1e-169 600.5 478 63.0
BraA05t22282Z Brassica rapa HOM05D004150 ORTHO05D005087 1.1e-169 600.5 473 63.4
BraA06t23329Z Brassica rapa HOM05D004150 ORTHO05D005087 1.4e-169 600.1 477 63.9
ATR0127G006 Amborella trichopoda HOM05D004150 ORTHO05D005087 3.2e-169 599.0 482 63.7
BcaC05g29034 Brassica carinata HOM05D004150 ORTHO05D005087 3.2e-169 599.0 478 62.8
A05p34660 Brassica napus HOM05D004150 ORTHO05D005087 4.2e-169 598.6 474 63.3
Ah.04g164080 Amaranthus hybridus HOM05D004150 ORTHO05D005087 5.5e-169 598.2 480 62.3
BcaC08g43529 Brassica carinata HOM05D004150 ORTHO05D005087 5.5e-169 598.2 476 63.4
BolC6t35999H Brassica oleracea HOM05D004150 ORTHO05D005087 5.5e-169 598.2 476 63.4
BcaB07g33329 Brassica carinata HOM05D004150 ORTHO05D005087 1.6e-168 596.7 472 62.7
BcaB06g25355 Brassica carinata HOM05D004150 ORTHO05D005087 1.5e-166 590.1 478 63.2
AUR62019617 Chenopodium quinoa HOM05D004150 ORTHO05D005087 1.5e-166 590.1 482 63.3
C06p09220 Brassica napus HOM05D004150 ORTHO05D005087 1.7e-165 586.6 476 62.6
AUR62039606 Chenopodium quinoa HOM05D004150 ORTHO05D005087 3.7e-165 585.5 482 62.9
SalBow7G0391 Salvia bowleyana HOM05D004150 ORTHO05D005087 4.8e-165 585.1 477 62.9
Migut.H02018 Erythranthe guttata HOM05D004150 ORTHO05D005087 8.2e-165 584.3 441 67.8
Dinv15009 Davidia involucrata HOM05D004150 ORTHO05D005087 2.9e-162 575.9 389 72.8
TAR627G0919 Trochodendron aralioides HOM05D004150 ORTHO05D005087 2.0e-158 563.1 390 72.3
Potri.001G386700 Populus trichocarpa HOM05D004150 ORTHO05D005087 5.7e-158 561.6 392 72.4
Dinv18386 Davidia involucrata HOM05D004150 ORTHO05D005087 1.7e-154 550.1 392 69.4
Duzib213G1096 Durio zibethinus HOM05D004150 ORTHO05D005087 3.6e-152 542.3 439 65.1
Zm00001eb154220 Zea mays HOM05D004150 ORTHO05D005087 2.2e-149 533.1 500 54.0
Os01g0729900 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 1.4e-148 530.4 494 53.2
ECA240G3777 Erigeron canadensis HOM05D004150 ORTHO05D005087 4.5e-147 525.4 396 65.7
QL08p025853 Quercus lobata HOM05D004150 ORTHO05D005087 1.3e-146 523.9 290 84.8
Hund10457 Selenicereus undatus HOM05D004150 ORTHO05D005087 1.1e-145 520.8 440 61.8
Sabra11G0094900 Salix brachista HOM05D004150 ORTHO05D005087 1.9e-145 520.0 438 63.5
CDE06G0863 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 1.7e-141 506.9 460 57.0
CiPaw.12G111300 Carya illinoinensis HOM05D004150 ORTHO05D005087 8.2e-141 504.6 344 74.1
Cpa.g.sc77.46 Carica papaya HOM05D004150 ORTHO05D005087 1.1e-140 504.2 282 83.0
HPP92_005189 Vanilla planifolia HOM05D004150 ORTHO05D005087 1.3e-138 497.3 395 61.8
Nn3g21055 Nelumbo nucifera HOM05D004150 ORTHO05D005087 5.0e-138 495.4 409 64.3
Os05g0530300 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 5.0e-138 495.4 510 51.0
Zm00001eb361900 Zea mays HOM05D004150 ORTHO05D005087 7.5e-134 481.5 456 53.9
Nitab4.5_0024430g0010 Nicotiana tabacum HOM05D004150 ORTHO05D005087 5.0e-130 468.8 287 75.3
AL1G61960 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 1.1e-129 467.6 322 67.4
unitig_21.g20061 Utricularia gibba HOM05D004150 ORTHO05D005087 4.4e-126 455.7 478 51.7
DCAR_013267 Daucus carota HOM05D004150 ORTHO05D005087 3.3e-121 439.5 288 69.4
SMO169G0186 Selaginella moellendorffii HOM05D004150 ORTHO05D005087 5.0e-114 415.6 286 66.4
AagrBONN_evm.TU.Sc2ySwM_362.2802 Anthoceros agrestis HOM05D004150 ORTHO05D005087 1.2e-112 411.0 528 43.6
Os06g0152800 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 1.6e-112 410.6 395 51.9
Mapoly0001s0101 Marchantia polymorpha HOM05D004150 ORTHO05D005087 6.4e-109 398.7 556 43.5
Zm00001eb271010 Zea mays HOM05D004150 ORTHO05D005087 7.5e-102 375.2 304 58.2
SEGI_28417 Sequoiadendron giganteum HOM05D004150 ORTHO05D005087 2.4e-100 370.2 384 47.1
Pp3c9_8060 Physcomitrium patens HOM05D004150 ORTHO05D005087 5.4e-100 369.0 544 41.5
CDE02G2021 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 1.7e-98 364.0 301 60.5
Hma1.2p1_1650F.1_g295710 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 2.9e-85 320.1 297 59.6
Zm00001eb293260 Zea mays HOM05D004150 ORTHO05D005087 4.2e-84 316.2 375 49.6
Mapoly0030s0045 Marchantia polymorpha HOM05D004150 ORTHO05D005087 2.1e-67 260.8 437 41.6
Haze_09270 Corylus avellana HOM05D004150 ORTHO05D005087 1.3e-66 258.1 205 63.4
Haze_09266 Corylus avellana HOM05D004150 ORTHO05D005087 5.8e-62 242.7 191 68.1
Gorai.010G164000 Gossypium raimondii HOM05D004150 ORTHO05D005087 6.1e-51 206.1 179 60.9
QL08p025867 Quercus lobata HOM05D004150 ORTHO05D005087 3.2e-44 183.7 201 55.7
AL1G62010 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 9.7e-41 172.2 138 65.2
Gohir.A02G079101 Gossypium hirsutum HOM05D004150 ORTHO05D005087 4.8e-40 169.9 149 65.1
Gohir.D04G018433 Gossypium hirsutum HOM05D004150 ORTHO05D005087 4.1e-39 166.8 95 82.1
Gorai.001G168800 Gossypium raimondii HOM05D004150 ORTHO05D005087 9.1e-39 165.6 92 83.7
Haze_09267 Corylus avellana HOM05D004150 ORTHO05D005087 2.6e-38 164.1 144 59.0
Haze_09268 Corylus avellana HOM05D004150 ORTHO05D005087 2.6e-38 164.1 144 59.0
Gohir.A11G228702 Gossypium hirsutum HOM05D004150 ORTHO05D005087 2.9e-37 160.6 92 80.4
EL10Ac9g22809 Beta vulgaris HOM05D004150 ORTHO05D005087 1.2e-35 155.2 187 51.3
arahy.Tifrunner.gnm1.ann1.H8RDCT Arachis hypogaea HOM05D004150 ORTHO05D005087 3.3e-33 147.1 86 76.7
arahy.Tifrunner.gnm1.ann1.R67SZW Arachis hypogaea HOM05D004150 ORTHO05D005087 3.3e-33 147.1 86 76.7
VMungo1309G1261 Vigna mungo HOM05D004150 ORTHO05D005087 1.3e-32 145.2 113 67.3
CDE09G0238 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 3.7e-32 143.7 127 50.4
Actinidia33318 Actinidia chinensis HOM05D004150 ORTHO05D005087 1.4e-31 141.7 174 46.6
Haze_11864 Corylus avellana HOM05D004150 ORTHO05D005087 1.8e-26 124.8 156 50.0
BolC5t30531H Brassica oleracea HOM05D004150 ORTHO05D032065 3.0e-26 124.0 153 42.5
Aqoxy1G01962 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 1.7e-24 118.2 115 56.5
VMungo0251G3124 Vigna mungo HOM05D004150 ORTHO05D005087 3.8e-13 80.5 69 63.8
ECA240G1314 Erigeron canadensis HOM05D000062 ORTHO05D000043 7.2e-12 76.3 44 77.3


User provided reference genes

Program Settings