Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G0074 Fragaria x ananassa HOM05D002890 ORTHO05D005855 0.0e+00 2598.2 1375 100.0
FvH4_3g02070 Fragaria vesca HOM05D002890 ORTHO05D005855 0.0e+00 2559.6 1379 98.7
FAN25G2328 Fragaria x ananassa HOM05D002890 ORTHO05D005855 0.0e+00 2487.2 1378 96.2
RcHm_v2.0_Chr5g0002971 Rosa chinensis HOM05D002890 ORTHO05D005855 0.0e+00 2186.0 1392 86.0
Prupe.4G020900 Prunus persica HOM05D002890 ORTHO05D005855 0.0e+00 1427.2 1466 61.1
MD10G1321400 Malus domestica HOM05D002890 ORTHO05D005855 0.0e+00 1364.7 1447 58.6
Cfa000220 Carpinus fangiana HOM05D002890 ORTHO05D005855 0.0e+00 1139.0 1489 51.4
QL03p063516 Quercus lobata HOM05D002890 ORTHO05D005855 0.0e+00 1129.4 1503 50.7
QL03p063938 Quercus lobata HOM05D002890 ORTHO05D005855 0.0e+00 1125.2 1503 50.8
Haze_06800 Corylus avellana HOM05D002890 ORTHO05D005855 0.0e+00 1119.8 1531 50.4
MD05G1346800 Malus domestica HOM05D002890 ORTHO05D005855 0.0e+00 1117.1 1272 56.8
CiPaw.09G092000 Carya illinoinensis HOM05D002890 ORTHO05D005855 0.0e+00 1104.0 1507 49.8
Dinv20052 Davidia involucrata HOM05D002890 ORTHO05D005855 5.3e-305 1051.6 1495 49.4
CANSAT56G4108 Cannabis sativa HOM05D002890 ORTHO05D005855 8.4e-303 1044.3 1466 49.9
CANSAT64G2516 Cannabis sativa HOM05D002890 ORTHO05D005855 1.0e-300 1037.3 1434 50.0
Ciclev10010907m.g Citrus clementina HOM05D002890 ORTHO05D005855 3.5e-293 1012.3 1468 47.8
Dinv13894 Davidia involucrata HOM05D002890 ORTHO05D005855 3.9e-292 1008.8 1478 47.8
Thecc.06G220400 Theobroma cacao HOM05D002890 ORTHO05D005855 7.4e-291 1004.6 1464 47.5
Duzib192G0355 Durio zibethinus HOM05D002890 ORTHO05D005855 2.1e-285 986.5 1472 46.7
COL.COLO4_31775 Corchorus olitorius HOM05D002890 ORTHO05D005855 1.5e-280 970.3 1474 47.1
Gorai.011G014000 Gossypium raimondii HOM05D002890 ORTHO05D005855 1.5e-280 970.3 1481 46.4
Gohir.A10G012660 Gossypium hirsutum HOM05D002890 ORTHO05D005855 6.5e-279 964.9 1482 46.4
Gohir.D10G012400 Gossypium hirsutum HOM05D002890 ORTHO05D005855 1.4e-276 957.2 1479 46.3
TAR381G0565 Trochodendron aralioides HOM05D002890 ORTHO05D005855 1.3e-274 950.7 1363 47.0
Potri.011G003500 Populus trichocarpa HOM05D002890 ORTHO05D005855 2.2e-274 949.9 1408 45.8
Manes.17G038900 Manihot esculenta HOM05D002890 ORTHO05D005855 1.2e-272 944.1 1452 46.8
arahy.Tifrunner.gnm1.ann1.1MU60G Arachis hypogaea HOM05D002890 ORTHO05D005855 2.0e-272 943.3 1393 46.1
arahy.Tifrunner.gnm1.ann1.3SKL4U Arachis hypogaea HOM05D002890 ORTHO05D005855 1.5e-270 937.2 1397 45.7
Sabra11G0001700 Salix brachista HOM05D002890 ORTHO05D005855 8.8e-268 927.9 1403 45.5
Glyma.13G204900 Glycine max HOM05D002890 ORTHO05D005855 1.6e-264 917.1 1452 45.7
VMungo1309G2953 Vigna mungo HOM05D002890 ORTHO05D005855 5.9e-264 915.2 1439 44.9
Glyma.15G107800 Glycine max HOM05D002890 ORTHO05D005855 1.0e-263 914.4 1453 45.1
Phvul.006G149850 Phaseolus vulgaris HOM05D002890 ORTHO05D005855 6.5e-263 911.8 1443 44.1
VMungo0540G2163 Vigna mungo HOM05D002890 ORTHO05D005855 2.5e-262 909.8 1472 43.7
TWI38G1984 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 1.6e-261 907.1 1435 44.7
CSS0042685 Camellia sinensis var. sinensis HOM05D002890 ORTHO05D005855 3.6e-261 906.0 1392 46.4
TAR629G0274 Trochodendron aralioides HOM05D002890 ORTHO05D005855 4.8e-258 895.6 1522 43.4
TWI38G1729 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 1.5e-254 884.0 1373 44.0
Lalb_Chr20g0118631 Lupinus albus HOM05D002890 ORTHO05D005855 4.2e-254 882.5 1383 44.8
Eucgr.E04054 Eucalyptus grandis HOM05D002890 ORTHO05D005855 2.2e-250 870.2 1324 45.0
Ca_00660_v3 Cicer arietinum L. HOM05D002890 ORTHO05D005855 2.0e-248 863.6 1453 43.4
Lj6g0006472 Lotus japonicus HOM05D002890 ORTHO05D005855 9.2e-241 838.2 1397 44.0
Lj1g0005233 Lotus japonicus HOM05D002890 ORTHO05D005855 2.1e-237 827.0 1372 43.7
CiPaw.10G071100 Carya illinoinensis HOM05D002890 ORTHO05D005855 4.4e-235 819.3 982 53.4
Rhsim06G0075600 Rhododendron simsii HOM05D002890 ORTHO05D005855 3.7e-234 816.2 1360 43.9
Medtr2g023280 Medicago truncatula HOM05D002890 ORTHO05D005855 2.4e-233 813.5 1285 45.1
Psat3g207880 Pisum sativum HOM05D002890 ORTHO05D005855 2.4e-233 813.5 1292 44.7
Actinidia36598 Actinidia chinensis HOM05D002890 ORTHO05D005855 9.2e-233 811.6 1323 45.2
Cc09_g01670 Coffea canephora HOM05D002890 ORTHO05D005855 3.0e-231 806.6 1376 43.6
TPR.G9950 Trifolium pratense HOM05D002890 ORTHO05D005855 3.9e-231 806.2 1422 43.2
vmacro21934 Vaccinium macrocarpon HOM05D002890 ORTHO05D005855 1.8e-228 797.3 1298 44.3
CAN.G65.76 Capsicum annuum HOM05D002890 ORTHO05D005855 1.1e-222 778.1 1235 44.9
Sed0017963 Sechium edule HOM05D002890 ORTHO05D005855 2.3e-220 770.4 1225 44.1
Sopen06g028640 Solanum pennellii HOM05D002890 ORTHO05D005855 3.4e-219 766.5 1256 43.7
GSVIVG01012724001 Vitis vinifera HOM05D002890 ORTHO05D005855 4.9e-218 762.7 1431 41.0
Solyc06g072270.4 Solanum lycopersicum HOM05D002890 ORTHO05D005855 2.4e-217 760.4 1241 44.5
Aqoxy1G00468 Aquilegia oxysepala HOM05D002890 ORTHO05D005855 5.4e-217 759.2 1296 43.4
MSTRG.23208 Avicennia marina HOM05D002890 ORTHO05D005855 4.6e-216 756.1 1392 41.6
CsaV3_3G002680 Cucumis sativus L. HOM05D002890 ORTHO05D005855 2.1e-213 747.3 1220 43.2
MELO3C013937.2 Cucumis melo HOM05D002890 ORTHO05D005855 8.9e-212 741.9 1192 44.4
Hund21410 Selenicereus undatus HOM05D002890 ORTHO05D005855 1.3e-210 738.0 1396 39.0
PGR042G1125 Punica granatum HOM05D002890 ORTHO05D005855 4.9e-210 736.1 1418 41.3
PSO017G2731 Papaver somniferum HOM05D002890 ORTHO05D005855 1.2e-208 731.5 1242 43.6
ClCG10G002660 Citrullus lanatus HOM05D002890 ORTHO05D005855 1.1e-206 724.9 1225 43.5
DCAR_028200 Daucus carota HOM05D002890 ORTHO05D005855 2.1e-205 720.7 1301 42.2
THA.LOC104812970 Tarenaya hassleriana HOM05D002890 ORTHO05D005855 8.1e-205 718.8 1475 39.3
SalBow5G1338 Salvia bowleyana HOM05D002890 ORTHO05D005855 1.5e-203 714.5 1447 39.5
Nitab4.5_0001678g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 6.4e-202 709.1 1226 42.3
Sc17g0007380 Simmondsia chinensis HOM05D002890 ORTHO05D005855 1.3e-199 701.4 1414 39.1
Nitab4.5_0000033g0410 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.3e-197 694.9 1267 41.3
Peaxi162Scf00643g00544 Petunia axillaris HOM05D002890 ORTHO05D005855 1.2e-192 678.3 1359 39.1
PSO478G2895 Papaver somniferum HOM05D002890 ORTHO05D005855 4.6e-184 649.8 1253 40.9
Migut.O00260 Erythranthe guttata HOM05D002890 ORTHO05D005855 3.9e-183 646.7 1267 40.1
ECA236G1013 Erigeron canadensis HOM05D002890 ORTHO05D005855 4.8e-181 639.8 1210 40.7
Ah.06g183850 Amaranthus hybridus HOM05D002890 ORTHO05D005855 8.4e-178 629.0 1216 39.5
AUR62029351 Chenopodium quinoa HOM05D002890 ORTHO05D005855 1.8e-175 621.3 1441 37.1
Sp2g00190 Schrenkiella parvula HOM05D002890 ORTHO05D005855 5.3e-172 609.8 1342 37.6
HanXRQChr15g0470641 Helianthus annuus HOM05D002890 ORTHO05D005855 2.2e-170 604.4 1260 38.9
unitig_749.g13717 Utricularia gibba HOM05D002890 ORTHO05D005855 5.0e-170 603.2 1282 38.4
AL2G10210 Arabidopsis lyrata HOM05D002890 ORTHO05D005855 1.8e-167 594.7 1352 38.1
AT1G64570 Arabidopsis thaliana HOM05D002890 ORTHO05D005855 1.8e-167 594.7 1339 38.6
Thhalv10023221m.g Eutrema salsugineum HOM05D002890 ORTHO05D005855 3.3e-166 590.5 1343 36.9
EL10Ac4g08116 Beta vulgaris HOM05D002890 ORTHO05D005855 1.7e-165 588.2 1211 39.1
C09p17660 Brassica napus HOM05D002890 ORTHO05D005855 8.2e-165 585.9 1326 36.7
BolC9t54660H Brassica oleracea HOM05D002890 ORTHO05D005855 8.2e-165 585.9 1326 36.7
AUR62034232 Chenopodium quinoa HOM05D002890 ORTHO05D005855 3.1e-164 583.9 1412 36.6
A09p14580 Brassica napus HOM05D002890 ORTHO05D005855 1.0e-162 578.9 1321 37.1
CDE05G0302 Ceratophyllum demersum HOM05D002890 ORTHO05D005855 2.2e-162 577.8 1277 37.7
BraA09t37106Z Brassica rapa HOM05D002890 ORTHO05D005855 2.9e-162 577.4 1332 36.8
Carub.0002s0019 Capsella rubella HOM05D002890 ORTHO05D005855 7.2e-161 572.8 1345 36.8
CARHR046380 Cardamine hirsuta HOM05D002890 ORTHO05D005855 9.4e-161 572.4 1389 36.4
ATR0580G054 Amborella trichopoda HOM05D002890 ORTHO05D005855 7.9e-160 569.3 1029 41.0
Aa31LG2G1570 Aethionema arabicum HOM05D002890 ORTHO05D005855 2.9e-154 550.8 1418 36.7
Lsat_1_v5_gn_7_16040 Lactuca sativa HOM05D002890 ORTHO05D005855 1.5e-153 548.5 1122 39.8
MBI15_g03194_MAGBIO Magnolia biondii HOM05D002890 ORTHO05D005855 1.9e-153 548.1 1416 35.2
Nitab4.5_0001247g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 2.2e-149 534.6 1138 38.7
Zm00001eb310710 Zea mays HOM05D002890 ORTHO05D005855 4.7e-144 516.9 1184 36.5
RcHm_v2.0_Chr5g0003091 Rosa chinensis HOM05D002890 ORTHO05D005855 2.4e-140 504.6 305 84.3
SEGI_27437 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 1.1e-137 495.7 1216 35.9
Nitab4.5_0002954g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.6e-136 491.9 841 41.4
Atru.chr10.2227 Acer truncatum HOM05D002890 ORTHO05D005855 2.2e-133 481.5 652 50.6
Nitab4.5_0022153g0010 Nicotiana tabacum HOM05D002890 ORTHO05D005855 2.5e-129 468.0 603 48.6
RcHm_v2.0_Chr5g0003031 Rosa chinensis HOM05D002890 ORTHO05D005855 1.7e-122 445.3 270 83.7
Nn4g25681 Nelumbo nucifera HOM05D002890 ORTHO05D005855 8.3e-117 426.4 674 46.7
Actinidia10696 Actinidia chinensis HOM05D002890 ORTHO05D005855 2.7e-115 421.4 633 46.3
Pp3c26_140 Physcomitrium patens HOM05D002890 ORTHO05D005855 1.0e-114 419.5 808 39.0
Atru.chr10.2228 Acer truncatum HOM05D002890 ORTHO05D005855 2.3e-114 418.3 784 43.5
Mapoly0029s0108 Marchantia polymorpha HOM05D002890 ORTHO05D005855 4.0e-111 407.5 1016 33.8
HPP92_025073 Vanilla planifolia HOM05D002890 ORTHO05D005855 2.1e-107 395.2 1250 32.6
SMO364G0505 Selaginella moellendorffii HOM05D002890 ORTHO05D005855 4.1e-100 370.9 507 46.7
Oeu039345.1 Olea europaea HOM05D002890 ORTHO05D005855 5.4e-100 370.5 451 51.9
SHI02202 Sapria himalayana HOM05D000002 ORTHO05D000001 2.5e-97 361.7 476 48.3
HPP92_025078 Vanilla planifolia HOM05D002890 ORTHO05D005855 4.4e-94 350.9 641 43.4
AagrBONN_evm.TU.Sc2ySwM_228.3189 Anthoceros agrestis HOM05D002890 ORTHO05D005855 9.3e-92 343.2 708 39.4
BcaC04g22581 Brassica carinata HOM05D002890 ORTHO05D007906 4.3e-89 334.3 492 44.7
MD05G1347100 Malus domestica HOM05D002890 ORTHO05D005855 1.7e-77 295.8 350 50.3
Lj1P1230T41 Lonicera japonica HOM05D002890 ORTHO05D005855 6.0e-75 287.3 415 47.2
SGA_v2.0_scaffold25G10747 Striga asiatica HOM05D002890 ORTHO05D005855 3.2e-68 265.0 553 37.1
QL05p073153 Quercus lobata HOM05D002890 ORTHO05D005855 7.1e-68 263.8 562 38.3
Medtr2g023290 Medicago truncatula HOM05D002975 ORTHO05D005855 2.8e-56 225.3 517 36.4
MD05G1347200 Malus domestica HOM05D002890 ORTHO05D005855 7.7e-54 217.2 359 50.7
BcaC01g05870 Brassica carinata HOM05D002890 ORTHO05D005855 3.8e-53 214.9 502 35.5
Oeu002905.1 Olea europaea HOM05D002890 ORTHO05D005855 1.2e-51 209.9 619 35.1
C03p21570 Brassica napus HOM05D002890 ORTHO05D005855 4.6e-51 208.0 502 34.3
QL05p073148 Quercus lobata HOM05D002890 ORTHO05D005855 4.1e-47 194.9 584 32.7
CBR_g32188 Chara braunii HOM05D002890 ORTHO05D005855 6.5e-45 187.6 890 26.7
RcHm_v2.0_Chr5g0003041 Rosa chinensis HOM05D002890 ORTHO05D005855 2.5e-44 185.7 164 73.8
RcHm_v2.0_Chr5g0003151 Rosa chinensis HOM05D002890 ORTHO05D005855 3.2e-44 185.3 164 73.8
SHI01979 Sapria himalayana HOM05D002890 ORTHO05D005855 2.7e-43 182.2 153 58.8
RcHm_v2.0_Chr5g0003101 Rosa chinensis HOM05D002890 ORTHO05D005855 4.7e-43 181.4 164 73.8
CiPaw.10G071000 Carya illinoinensis HOM05D002890 ORTHO05D005855 8.2e-40 170.6 315 47.3
Potri.004G015034 Populus trichocarpa HOM05D002890 ORTHO05D005855 2.4e-39 169.1 242 45.5
BolC3t14541H Brassica oleracea HOM05D002890 ORTHO05D005855 4.1e-39 168.3 466 33.0
Cpa.g.c46709 Carica papaya HOM05D002890 ORTHO05D005855 5.3e-39 167.9 232 45.3
BcaC04g22582 Brassica carinata HOM05D002890 ORTHO05D005855 9.7e-33 147.1 501 30.5
SEGI_38151 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 2.8e-32 145.6 487 30.4
Duzib160G0022 Durio zibethinus HOM05D002890 ORTHO05D005855 3.7e-32 145.2 270 45.2
BcaB07g31476 Brassica carinata HOM05D002890 ORTHO05D005855 1.0e-26 127.1 531 29.0
Potri.004G015001 Populus trichocarpa HOM05D002890 ORTHO05D005855 1.5e-25 123.2 227 41.4
MCO05G671 Micromonas commoda HOM05D002890 ORTHO05D005855 2.1e-19 102.8 645 24.0
SEGI_20102 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 1.2e-14 87.0 75 57.3
Nitab4.5_0002954g0080 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.7e-13 83.2 122 45.9
HPP92_025077 Vanilla planifolia HOM05D002890 ORTHO05D005855 6.6e-13 81.3 518 27.8
Nitab4.5_0002954g0060 Nicotiana tabacum HOM05D002890 ORTHO05D005855 8.6e-13 80.9 109 53.2
Nitab4.5_0000267g0080 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.2e-11 77.0 222 34.7
SEGI_38924 Sequoiadendron giganteum HOM05D009358 ORTHO05D011087 6.8e-10 71.2 55 63.6
SHI02204 Sapria himalayana HOM05D002890 ORTHO05D005855 4.9e-08 65.1 254 29.5


User provided reference genes

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