Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN20G3168 Fragaria x ananassa HOM05D004999 ORTHO05D007513 1.6e-261 905.6 458 100.0
FAN15G0085 Fragaria x ananassa HOM05D004999 ORTHO05D007513 2.8e-226 788.5 438 92.5
FvH4_2g38570 Fragaria vesca HOM05D004999 ORTHO05D007513 1.2e-221 773.1 440 90.9
FAN27G0904 Fragaria x ananassa HOM05D004999 ORTHO05D007513 3.9e-220 768.1 440 90.9
RcHm_v2.0_Chr6g0302731 Rosa chinensis HOM05D004999 ORTHO05D007513 2.1e-205 719.2 440 85.0
Prupe.1G366700 Prunus persica HOM05D004999 ORTHO05D007513 3.2e-182 642.1 440 77.0
MD15G1013300 Malus domestica HOM05D004999 ORTHO05D007513 8.5e-175 617.5 440 74.3
MD08G1013700 Malus domestica HOM05D004999 ORTHO05D007513 4.2e-174 615.1 440 74.8
Cfa013940 Carpinus fangiana HOM05D004999 ORTHO05D007513 6.5e-159 564.7 440 67.3
QL02p011429 Quercus lobata HOM05D004999 ORTHO05D007513 6.1e-157 558.1 464 65.1
GSVIVG01009891001 Vitis vinifera HOM05D004999 ORTHO05D007513 1.0e-156 557.4 449 66.6
Thecc.08G043100 Theobroma cacao HOM05D004999 ORTHO05D007513 1.8e-156 556.6 440 65.7
Dinv39509 Davidia involucrata HOM05D004999 ORTHO05D007513 8.8e-156 554.3 446 66.8
TWI56G0255 Tripterygium wilfordii HOM05D004999 ORTHO05D007513 4.4e-155 552.0 441 66.9
Gorai.009G195100 Gossypium raimondii HOM05D004999 ORTHO05D007513 2.2e-154 549.7 440 65.2
Manes.05G148301 Manihot esculenta HOM05D004999 ORTHO05D007513 2.2e-154 549.7 440 65.2
Gohir.D05G189800 Gossypium hirsutum HOM05D004999 ORTHO05D007513 1.4e-153 547.0 440 65.0
Haze_22624 Corylus avellana HOM05D004999 ORTHO05D007513 1.6e-152 543.5 479 61.8
Ciclev10001119m.g Citrus clementina HOM05D004999 ORTHO05D007513 5.9e-152 541.6 440 65.0
Duzib041G0279 Durio zibethinus HOM05D004999 ORTHO05D007513 1.0e-151 540.8 441 63.9
Gohir.A05G186900 Gossypium hirsutum HOM05D004999 ORTHO05D007513 1.0e-151 540.8 440 64.5
Atru.chr13.305 Acer truncatum HOM05D004999 ORTHO05D007513 1.1e-150 537.3 441 63.3
CiPaw.08G065700 Carya illinoinensis HOM05D004999 ORTHO05D007513 1.5e-150 537.0 456 64.3
TWI36G1418 Tripterygium wilfordii HOM05D004999 ORTHO05D007513 7.2e-150 534.6 442 64.5
TAR381G0667 Trochodendron aralioides HOM05D004999 ORTHO05D007513 2.7e-149 532.7 478 60.9
Duzib093G1482 Durio zibethinus HOM05D004999 ORTHO05D007513 6.8e-148 528.1 444 63.5
Rhsim06G0021900 Rhododendron simsii HOM05D004999 ORTHO05D007513 7.7e-144 514.6 443 63.0
Dinv31836 Davidia involucrata HOM05D004999 ORTHO05D007513 1.3e-143 513.8 456 62.5
Actinidia15416 Actinidia chinensis HOM05D004999 ORTHO05D007513 8.6e-143 511.1 444 61.9
ClCG08G014370 Citrullus lanatus HOM05D004999 ORTHO05D007513 9.5e-142 507.7 445 62.0
CSS0048815 Camellia sinensis var. sinensis HOM05D004999 ORTHO05D007513 1.2e-141 507.3 440 61.4
Lalb_Chr24g0398721 Lupinus albus HOM05D004999 ORTHO05D007513 1.2e-141 507.3 443 62.1
Ca_13413_v3 Cicer arietinum L. HOM05D004999 ORTHO05D007513 1.6e-141 506.9 439 60.8
CsaV3_2G029460 Cucumis sativus L. HOM05D004999 ORTHO05D007513 2.1e-141 506.5 446 62.1
Lj4A25T52 Lonicera japonica HOM05D004999 ORTHO05D007513 6.1e-141 505.0 436 62.2
MELO3C011005.2 Cucumis melo HOM05D004999 ORTHO05D007513 1.5e-139 500.4 446 61.9
Potri.002G023300 Populus trichocarpa HOM05D004999 ORTHO05D007513 1.5e-139 500.4 441 61.2
Nn1g05879 Nelumbo nucifera HOM05D004999 ORTHO05D007513 7.5e-139 498.0 444 60.8
Sed0007289 Sechium edule HOM05D004999 ORTHO05D007513 7.5e-139 498.0 440 61.6
vmacro21722 Vaccinium macrocarpon HOM05D004999 ORTHO05D007513 2.2e-138 496.5 505 55.8
Lj5g0025890 Lotus japonicus HOM05D004999 ORTHO05D007513 3.7e-138 495.7 426 61.7
Glyma.17G257600 Glycine max HOM05D004999 ORTHO05D007513 2.0e-136 490.0 448 60.7
Aqoxy5G01776 Aquilegia oxysepala HOM05D004999 ORTHO05D007513 3.5e-136 489.2 483 55.9
COL.COLO4_26158 Corchorus olitorius HOM05D004999 ORTHO05D007513 4.5e-136 488.8 408 64.2
arahy.Tifrunner.gnm1.ann1.A5JBZH Arachis hypogaea HOM05D004999 ORTHO05D007513 7.8e-136 488.0 437 60.4
PGR083G2044 Punica granatum HOM05D004999 ORTHO05D007513 7.8e-136 488.0 447 60.0
arahy.Tifrunner.gnm1.ann1.BI3E2S Arachis hypogaea HOM05D004999 ORTHO05D007513 2.9e-135 486.1 437 60.2
Cc10_g01760 Coffea canephora HOM05D004999 ORTHO05D007513 3.8e-135 485.7 446 59.2
Medtr1g024920 Medicago truncatula HOM05D004999 ORTHO05D007513 3.8e-135 485.7 442 60.4
Migut.C00822 Erythranthe guttata HOM05D004999 ORTHO05D007513 5.0e-135 485.3 428 58.9
Lj5g0016888 Lotus japonicus HOM05D004999 ORTHO05D007513 1.5e-134 483.8 426 61.0
PGSC0003DMG400003779 Solanum tuberosum HOM05D004999 ORTHO05D007513 1.5e-134 483.8 429 60.6
CAN.G311.21 Capsicum annuum HOM05D004999 ORTHO05D007513 2.5e-134 483.0 443 58.7
VMungo0647G0227 Vigna mungo HOM05D004999 ORTHO05D007513 4.3e-134 482.3 453 59.4
Phvul.001G007200 Phaseolus vulgaris HOM05D004999 ORTHO05D007513 1.6e-133 480.3 451 59.4
Sopen04g034980 Solanum pennellii HOM05D004999 ORTHO05D007513 4.7e-133 478.8 428 59.6
Solyc04g081360.3 Solanum lycopersicum HOM05D004999 ORTHO05D007513 1.8e-132 476.9 428 59.3
THA.LOC104806888 Tarenaya hassleriana HOM05D004999 ORTHO05D007513 1.8e-132 476.9 435 61.4
TPR.G30999 Trifolium pratense HOM05D004999 ORTHO05D007513 2.3e-132 476.5 434 60.4
Lsat_1_v5_gn_2_8681 Lactuca sativa HOM05D004999 ORTHO05D007513 4.0e-132 475.7 435 58.6
CANSAT01G2959 Cannabis sativa HOM05D004999 ORTHO05D007513 1.2e-131 474.2 437 59.5
SGA_v2.0_scaffold11G05913 Striga asiatica HOM05D004999 ORTHO05D007513 5.7e-131 471.9 431 58.0
Sc02g0008530 Simmondsia chinensis HOM05D004999 ORTHO05D007513 7.5e-131 471.5 429 60.4
ECA238G1075 Erigeron canadensis HOM05D004999 ORTHO05D007513 1.7e-130 470.3 450 58.0
SalBow7G4700 Salvia bowleyana HOM05D004999 ORTHO05D007513 7.0e-129 464.9 439 56.3
Sabra02G0019000 Salix brachista HOM05D004999 ORTHO05D007513 1.2e-128 464.2 454 56.8
AL4G44920 Arabidopsis lyrata HOM05D004999 ORTHO05D007513 1.5e-126 457.2 441 57.4
AT2G45730 Arabidopsis thaliana HOM05D004999 ORTHO05D007513 1.9e-126 456.8 440 57.5
Carub.0004s2839 Capsella rubella HOM05D004999 ORTHO05D007513 2.8e-125 453.0 431 58.2
Nitab4.5_0001540g0030 Nicotiana tabacum HOM05D004999 ORTHO05D007513 1.1e-124 451.1 443 56.2
unitig_749.g13859 Utricularia gibba HOM05D004999 ORTHO05D007513 1.8e-124 450.3 432 55.3
Oeu020873.1 Olea europaea HOM05D004999 ORTHO05D007513 4.0e-124 449.1 429 57.3
Thhalv10001448m.g Eutrema salsugineum HOM05D004999 ORTHO05D007513 5.2e-124 448.7 440 57.3
PSO700G0267 Papaver somniferum HOM05D004999 ORTHO05D007513 5.2e-124 448.7 449 56.6
EL10Ac6g14553 Beta vulgaris HOM05D004999 ORTHO05D007513 1.5e-123 447.2 437 57.7
Sp4g27780 Schrenkiella parvula HOM05D004999 ORTHO05D007513 3.4e-123 446.0 443 56.9
PSO170G1336 Papaver somniferum HOM05D004999 ORTHO05D007513 7.5e-123 444.9 444 55.6
Eucgr.F01642 Eucalyptus grandis HOM05D004999 ORTHO05D007513 9.8e-123 444.5 397 59.9
ATR0767G249 Amborella trichopoda HOM05D004999 ORTHO05D007513 1.9e-121 440.3 470 54.0
DCAR_017472 Daucus carota HOM05D004999 ORTHO05D007513 9.2e-121 438.0 429 57.3
BraA04t18860Z Brassica rapa HOM05D004999 ORTHO05D007513 2.0e-120 436.8 440 55.2
A04p33990 Brassica napus HOM05D004999 ORTHO05D007513 3.5e-120 436.0 440 55.2
CARHR140980 Cardamine hirsuta HOM05D004999 ORTHO05D007513 3.0e-119 433.0 428 55.1
C04p71790 Brassica napus HOM05D004999 ORTHO05D007513 5.0e-119 432.2 441 55.3
BcaB01g03255 Brassica carinata HOM05D004999 ORTHO05D007513 6.6e-119 431.8 428 55.6
Peaxi162Scf00438g00629 Petunia axillaris HOM05D004999 ORTHO05D007513 1.1e-118 431.0 443 54.6
TPR.G34334 Trifolium pratense HOM05D004999 ORTHO05D007513 2.5e-118 429.9 395 59.5
Hund05204 Selenicereus undatus HOM05D004999 ORTHO05D007513 5.6e-118 428.7 506 49.4
AUR62002963 Chenopodium quinoa HOM05D004999 ORTHO05D007513 7.3e-118 428.3 414 58.2
AUR62007769 Chenopodium quinoa HOM05D004999 ORTHO05D007513 3.6e-117 426.0 413 58.4
A03p25340 Brassica napus HOM05D004999 ORTHO05D007513 6.2e-117 425.2 440 54.3
BraA03t11740Z Brassica rapa HOM05D004999 ORTHO05D007513 1.1e-116 424.5 440 54.3
BcaB02g09016 Brassica carinata HOM05D004999 ORTHO05D007513 5.2e-116 422.2 446 55.2
BcaC02g07075 Brassica carinata HOM05D004999 ORTHO05D007513 5.2e-116 422.2 442 54.8
BolC4t28677H Brassica oleracea HOM05D004999 ORTHO05D007513 5.2e-116 422.2 442 54.8
Aa31LG9G12650 Aethionema arabicum HOM05D004999 ORTHO05D007513 2.0e-115 420.2 426 55.2
BcaC01g05108 Brassica carinata HOM05D004999 ORTHO05D007513 2.6e-115 419.9 429 55.5
Ah.04g153930 Amaranthus hybridus HOM05D004999 ORTHO05D007513 9.9e-115 417.9 435 54.9
HanXRQChr14g0430231 Helianthus annuus HOM05D004999 ORTHO05D007513 1.9e-113 413.7 438 54.8
C03p30250 Brassica napus HOM05D004999 ORTHO05D007513 2.3e-111 406.8 429 53.8
Glyma.14G218500 Glycine max HOM05D004999 ORTHO05D007513 3.1e-108 396.4 362 59.9
CDE09G1336 Ceratophyllum demersum HOM05D004999 ORTHO05D007513 4.4e-107 392.5 467 50.1
HPP92_027505 Vanilla planifolia HOM05D004999 ORTHO05D007513 4.9e-106 389.0 461 50.1
Os04g0112300 Oryza sativa ssp. japonica HOM05D004999 ORTHO05D007513 9.6e-102 374.8 460 49.1
Zm00001eb142530 Zea mays HOM05D004999 ORTHO05D007513 2.1e-101 373.6 453 49.2
Psat5g146560 Pisum sativum HOM05D004999 ORTHO05D007513 7.8e-96 355.1 313 62.3
MBI09_g25164_MAGBIO Magnolia biondii HOM05D004999 ORTHO05D007513 5.1e-95 352.4 373 54.7
Potri.005G238200 Populus trichocarpa HOM05D004999 ORTHO05D007513 8.7e-95 351.7 303 65.0
BolC3t15374H Brassica oleracea HOM05D004999 ORTHO05D007513 9.9e-91 338.2 356 54.2
Actinidia16981 Actinidia chinensis HOM05D004999 ORTHO05D007513 1.6e-88 330.9 442 45.7
Pp3c13_19410 Physcomitrium patens HOM05D004999 ORTHO05D007513 7.4e-86 322.0 439 43.5
HPP92_022409 Vanilla planifolia HOM05D004999 ORTHO05D007513 2.6e-83 313.5 349 53.3
Mapoly0050s0121 Marchantia polymorpha HOM05D004999 ORTHO05D007513 3.4e-75 286.6 505 37.8
AagrBONN_evm.TU.Sc2ySwM_344.355 Anthoceros agrestis HOM05D004999 ORTHO05D007513 4.2e-73 279.6 477 37.7
Cpa.g.sc8.166 Carica papaya HOM05D004999 ORTHO05D007513 7.4e-70 268.9 345 50.1
SMO367G0765 Selaginella moellendorffii HOM05D004999 ORTHO05D007513 1.5e-67 261.2 464 36.9
Oeu054699.1 Olea europaea HOM05D004999 ORTHO05D007513 1.4e-63 248.1 401 39.4
CBR_g45432 Chara braunii HOM05D004999 ORTHO05D007513 2.0e-54 217.6 595 30.3
Zm00001eb363800 Zea mays HOM05D004999 ORTHO05D007513 2.5e-41 174.1 148 64.2
MCO06G251 Micromonas commoda HOM05D004999 ORTHO05D007513 4.2e-41 173.3 448 31.0
PRCOL_00001952 Prasinoderma coloniale HOM05D004999 ORTHO05D007513 6.7e-39 166.0 449 27.6
Thhalv10014705m.g Eutrema salsugineum HOM05D004999 ORTHO05D007513 1.5e-33 148.3 178 48.9
Cre12.g543100 Chlamydomonas reinhardtii HOM05D004999 ORTHO05D007513 9.4e-33 145.6 258 39.1
Psat6g004000 Pisum sativum HOM05D000009 ORTHO05D000008 1.2e-30 138.7 242 38.0
BolC9t55805H Brassica oleracea HOM05D004999 ORTHO05D040156 5.0e-26 123.2 189 48.1
AL825U10010 Arabidopsis lyrata HOM05D004999 ORTHO05D007513 6.6e-26 122.9 133 52.6
Thecc.08G043300 Theobroma cacao HOM05D004999 ORTHO05D007513 6.6e-26 122.9 223 39.5
C09p29400 Brassica napus HOM05D004999 ORTHO05D040156 1.1e-25 122.1 189 47.6
SEGI_23149 Sequoiadendron giganteum HOM05D004999 ORTHO05D007513 3.1e-20 104.0 87 64.4
C08p30330 Brassica napus HOM05D004999 ORTHO05D007513 4.5e-19 100.1 175 41.7
SEGI_39734 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 2.3e-18 97.8 214 36.0
SEGI_05081 Sequoiadendron giganteum HOM05D004999 ORTHO05D007513 1.6e-16 91.7 88 52.3
MBI17_g46501_MAGBIO Magnolia biondii HOM05D004999 ORTHO05D012920 4.7e-16 90.1 59 71.2
MBI18_g38864_MAGBIO Magnolia biondii HOM05D001046 ORTHO05D012920 6.8e-15 86.3 128 41.4
FAN24G3067 Fragaria x ananassa HOM05D004999 ORTHO05D209228 1.6e-11 75.1 64 64.1
CAN.G566.39 Capsicum annuum HOM05D004999 ORTHO05D007513 1.7e-10 71.6 142 36.6
C02p41440 Brassica napus HOM05D004999 ORTHO05D024529 1.1e-09 68.9 73 52.1
C04p17480 Brassica napus HOM05D004999 ORTHO05D024529 2.8e-08 64.3 75 50.7
BcaC01g01121 Brassica carinata HOM05D004999 ORTHO05D024221 8.0e-08 62.8 95 43.2
BolC3t21145H Brassica oleracea HOM05D004999 ORTHO05D024221 1.5e-06 58.5 76 50.0
BolC4t23296H Brassica oleracea HOM05D004999 ORTHO05D024529 2.0e-06 58.2 55 58.2
BolC4t24340H Brassica oleracea HOM05D004999 ORTHO05D024529 7.5e-06 56.2 55 56.4


User provided reference genes

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