Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN20G3106 Fragaria x ananassa HOM05D000901 ORTHO05D004766 2.9e-128 461.8 225 100.0
FvH4_2g38030 Fragaria vesca HOM05D000901 ORTHO05D004766 1.1e-119 433.3 217 96.3
RcHm_v2.0_Chr6g0303571 Rosa chinensis HOM05D000901 ORTHO05D004766 1.2e-113 413.3 224 87.5
MD15G1007500 Malus domestica HOM05D000901 ORTHO05D004766 4.1e-98 361.7 219 76.7
MD08G1008700 Malus domestica HOM05D000901 ORTHO05D004766 7.0e-98 360.9 226 74.8
FAN27G1122 Fragaria x ananassa HOM05D000901 ORTHO05D001160 1.2e-97 360.1 179 98.3
Prupe.1G360400 Prunus persica HOM05D000901 ORTHO05D004766 4.0e-93 345.1 226 72.1
Manes.05G143600 Manihot esculenta HOM05D000901 ORTHO05D004766 7.5e-84 314.3 211 69.7
CiPaw.07G144500 Carya illinoinensis HOM05D000901 ORTHO05D004766 8.6e-80 300.8 223 64.6
Thecc.08G049900 Theobroma cacao HOM05D000901 ORTHO05D004766 1.1e-79 300.4 202 67.3
Sabra05G0189000 Salix brachista HOM05D000901 ORTHO05D004766 1.5e-79 300.1 220 64.5
CANSAT25G0446 Cannabis sativa HOM05D000901 ORTHO05D004766 3.3e-79 298.9 211 66.8
Ciclev10002332m.g Citrus clementina HOM05D000901 ORTHO05D004766 4.3e-79 298.5 219 63.0
Gorai.010G001700 Gossypium raimondii HOM05D000901 ORTHO05D004766 5.6e-79 298.1 210 65.7
Potri.005G244400 Populus trichocarpa HOM05D000901 ORTHO05D004766 5.6e-79 298.1 223 62.3
Cfa013996 Carpinus fangiana HOM05D000901 ORTHO05D004766 3.6e-78 295.4 220 61.8
Thhalv10019591m.g Eutrema salsugineum HOM05D000901 ORTHO05D004766 6.2e-78 294.7 217 66.4
Cpa.g.sc26.277 Carica papaya HOM05D000901 ORTHO05D004766 6.8e-77 291.2 214 61.7
arahy.Tifrunner.gnm1.ann1.K685T3 Arachis hypogaea HOM05D000901 ORTHO05D004766 5.8e-76 288.1 215 61.9
Thecc.08G050000 Theobroma cacao HOM05D000901 ORTHO05D004766 5.8e-76 288.1 195 67.7
BraA02t07071Z Brassica rapa HOM05D000901 ORTHO05D004766 7.6e-76 287.7 217 65.9
COL.COLO4_26098 Corchorus olitorius HOM05D000901 ORTHO05D004766 7.6e-76 287.7 198 64.6
Glyma.04G021300 Glycine max HOM05D000901 ORTHO05D004766 7.6e-76 287.7 217 59.4
arahy.Tifrunner.gnm1.ann1.774XMB Arachis hypogaea HOM05D000901 ORTHO05D004766 1.3e-75 287.0 215 61.9
Eucgr.F03719 Eucalyptus grandis HOM05D000901 ORTHO05D004766 1.7e-75 286.6 207 64.7
Sp5g31130 Schrenkiella parvula HOM05D000901 ORTHO05D004766 4.9e-75 285.0 216 64.4
Duzib041G0373 Durio zibethinus HOM05D000901 ORTHO05D004766 6.4e-75 284.6 195 66.2
QL02p012636 Quercus lobata HOM05D000901 ORTHO05D004766 6.4e-75 284.6 245 56.7
Glyma.04G021400 Glycine max HOM05D000901 ORTHO05D004766 1.1e-74 283.9 219 59.8
BcaC03g15640 Brassica carinata HOM05D000901 ORTHO05D004766 2.4e-74 282.7 216 65.3
BolC2t09354H Brassica oleracea HOM05D000901 ORTHO05D004766 4.1e-74 282.0 216 64.8
CSS0047191 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 4.1e-74 282.0 194 66.5
ClCG08G014120 Citrullus lanatus HOM05D000901 ORTHO05D004766 4.1e-74 282.0 227 58.6
CSS0049889 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 9.2e-74 280.8 215 62.3
TAR381G0201 Trochodendron aralioides HOM05D000901 ORTHO05D004766 1.2e-73 280.4 212 62.7
C02p33510 Brassica napus HOM05D000901 ORTHO05D004766 4.6e-73 278.5 216 64.4
PGR031G2145 Punica granatum HOM05D000901 ORTHO05D004766 7.8e-73 277.7 201 63.7
THA.LOC104813773 Tarenaya hassleriana HOM05D000901 ORTHO05D004766 1.0e-72 277.3 214 65.4
Lalb_Chr11g0061781 Lupinus albus HOM05D000901 ORTHO05D004766 1.3e-72 276.9 212 60.4
Phvul.009G019200 Phaseolus vulgaris HOM05D000901 ORTHO05D004766 1.3e-72 276.9 219 58.0
A02p20390 Brassica napus HOM05D000901 ORTHO05D004766 1.7e-72 276.6 216 63.9
TPR.G9568 Trifolium pratense HOM05D000901 ORTHO05D004766 1.7e-72 276.6 209 61.7
VMungo1309G2869 Vigna mungo HOM05D002716 ORTHO05D003324 2.3e-72 276.2 216 58.3
FAN15G2950 Fragaria x ananassa HOM05D000901 ORTHO05D001160 3.0e-72 275.8 179 80.4
AT1G76020 Arabidopsis thaliana HOM05D000901 ORTHO05D004766 6.6e-72 274.6 211 63.5
Lj1g0003310 Lotus japonicus HOM05D000901 ORTHO05D004766 9.6e-71 270.8 218 59.2
Sc15g0004710 Simmondsia chinensis HOM05D000901 ORTHO05D004766 9.6e-71 270.8 218 59.6
TWI56G0802 Tripterygium wilfordii HOM05D000901 ORTHO05D004766 1.2e-70 270.4 218 61.5
Potri.002G017500 Populus trichocarpa HOM05D000901 ORTHO05D004766 1.6e-70 270.0 219 59.4
A07p41510 Brassica napus HOM05D000901 ORTHO05D004766 2.1e-70 269.6 217 61.3
PSO063G0231 Papaver somniferum HOM05D000901 ORTHO05D004766 4.7e-70 268.5 219 57.5
Sed0006708 Sechium edule HOM05D000901 ORTHO05D004766 6.2e-70 268.1 203 59.6
Eucgr.F01691 Eucalyptus grandis HOM05D000901 ORTHO05D004766 8.1e-70 267.7 199 62.8
MELO3C011351.2 Cucumis melo HOM05D000901 ORTHO05D004766 1.1e-69 267.3 203 59.1
Medtr0332s0020 Medicago truncatula HOM05D000901 ORTHO05D004766 1.8e-69 266.5 215 57.7
Aa31LG4G6150 Aethionema arabicum HOM05D000901 ORTHO05D004766 2.4e-69 266.2 213 61.5
Lj4A800T39 Lonicera japonica HOM05D000901 ORTHO05D004766 3.1e-69 265.8 205 61.0
CsaV3_2G024310 Cucumis sativus L. HOM05D000901 ORTHO05D004766 4.0e-69 265.4 221 55.2
CARHR020720 Cardamine hirsuta HOM05D000901 ORTHO05D004766 5.2e-69 265.0 213 62.0
CARHR069550 Cardamine hirsuta HOM05D000901 ORTHO05D004766 5.2e-69 265.0 211 60.7
Aqoxy5G01833 Aquilegia oxysepala HOM05D000901 ORTHO05D004766 8.9e-69 264.2 223 58.7
EL10Ac1g02116 Beta vulgaris HOM05D000901 ORTHO05D004766 1.2e-68 263.8 195 61.0
Nitab4.5_0002730g0020 Nicotiana tabacum HOM05D000901 ORTHO05D004766 1.2e-68 263.8 219 58.0
PSO782G4846 Papaver somniferum HOM05D000901 ORTHO05D004766 1.2e-68 263.8 218 56.9
vmacro21856 Vaccinium macrocarpon HOM05D000901 ORTHO05D004766 1.5e-68 263.5 193 61.7
Carub.0001s1975 Capsella rubella HOM05D000901 ORTHO05D004766 2.0e-68 263.1 213 58.7
C06p49920 Brassica napus HOM05D000901 ORTHO05D004766 2.6e-68 262.7 217 59.0
PGR083G1908 Punica granatum HOM05D000901 ORTHO05D004766 2.6e-68 262.7 215 59.5
CAN.G1517.1 Capsicum annuum HOM05D000901 ORTHO05D004766 3.4e-68 262.3 187 61.5
AL1G33070 Arabidopsis lyrata HOM05D000901 ORTHO05D004766 5.8e-68 261.5 213 59.6
AUR62036698 Chenopodium quinoa HOM05D000901 ORTHO05D004766 5.8e-68 261.5 224 54.9
Psat7g082200 Pisum sativum HOM05D000901 ORTHO05D004766 7.6e-68 261.2 215 58.1
AL2G36040 Arabidopsis lyrata HOM05D000901 ORTHO05D004766 9.9e-68 260.8 247 55.1
Carub.0002s2290 Capsella rubella HOM05D000901 ORTHO05D004766 9.9e-68 260.8 215 59.5
AT1G20225 Arabidopsis thaliana HOM05D000901 ORTHO05D004766 1.7e-67 260.0 213 59.6
BcaC08g47093 Brassica carinata HOM05D000901 ORTHO05D004766 1.7e-67 260.0 216 59.7
Sp1g17990 Schrenkiella parvula HOM05D000901 ORTHO05D004766 2.2e-67 259.6 212 59.9
Ca_11598_v3 Cicer arietinum L. HOM05D000901 ORTHO05D004766 2.9e-67 259.2 192 61.5
HanXRQChr06g0184521 Helianthus annuus HOM05D000901 ORTHO05D004766 3.8e-67 258.8 213 55.4
Hund01706 Selenicereus undatus HOM05D000901 ORTHO05D004766 3.8e-67 258.8 212 57.5
Nn6g31933 Nelumbo nucifera HOM05D000901 ORTHO05D004766 4.9e-67 258.5 223 56.5
Oeu048721.1 Olea europaea HOM05D000901 ORTHO05D004766 6.4e-67 258.1 193 61.7
BcaC08g47306 Brassica carinata HOM05D000901 ORTHO05D004766 8.4e-67 257.7 217 58.1
BcaC08g47307 Brassica carinata HOM05D000901 ORTHO05D004766 8.4e-67 257.7 217 58.1
BcaB07g32030 Brassica carinata HOM05D000901 ORTHO05D004766 1.1e-66 257.3 212 59.4
CSS0010771 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 1.4e-66 256.9 193 61.1
Hund05158 Selenicereus undatus HOM05D000901 ORTHO05D004766 1.4e-66 256.9 215 56.3
Hund05161 Selenicereus undatus HOM05D000901 ORTHO05D004766 1.4e-66 256.9 215 56.3
Gohir.A06G001500 Gossypium hirsutum HOM05D000901 ORTHO05D004766 3.2e-66 255.8 174 66.7
Migut.C00891 Erythranthe guttata HOM05D000901 ORTHO05D004766 5.4e-66 255.0 220 56.4
C05p18770 Brassica napus HOM05D000901 ORTHO05D004766 7.1e-66 254.6 212 59.0
Nitab4.5_0001936g0050 Nicotiana tabacum HOM05D000901 ORTHO05D004766 9.3e-66 254.2 219 56.2
BolC5t30582H Brassica oleracea HOM05D000901 ORTHO05D004766 1.2e-65 253.8 212 59.0
GSVIVG01008758001 Vitis vinifera HOM05D000901 ORTHO05D004766 1.2e-65 253.8 214 58.4
BcaC05g25925 Brassica carinata HOM05D000901 ORTHO05D004766 1.6e-65 253.4 212 58.5
A06p16340 Brassica napus HOM05D000901 ORTHO05D004766 2.7e-65 252.7 213 59.2
BraA06t24738Z Brassica rapa HOM05D000901 ORTHO05D004766 6.0e-65 251.5 212 58.5
Lsat_1_v5_gn_2_7381 Lactuca sativa HOM05D000901 ORTHO05D004766 1.3e-64 250.4 213 54.9
Lj4A18T108 Lonicera japonica HOM05D000901 ORTHO05D004766 2.3e-64 249.6 206 56.8
Nitab4.5_0000498g0060 Nicotiana tabacum HOM05D000901 ORTHO05D004766 2.3e-64 249.6 218 53.2
Peaxi162Scf00064g00828 Petunia axillaris HOM05D000901 ORTHO05D004766 2.3e-64 249.6 213 54.5
BolC6t40030H Brassica oleracea HOM05D000901 ORTHO05D004766 3.0e-64 249.2 235 54.0
MBI05_g36763_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 3.0e-64 249.2 188 60.6
vmacro04376 Vaccinium macrocarpon HOM05D000901 ORTHO05D004766 3.9e-64 248.8 216 54.2
BraA07t31683Z Brassica rapa HOM05D000901 ORTHO05D004766 6.6e-64 248.1 236 54.7
DCAR_013891 Daucus carota HOM05D000901 ORTHO05D004766 4.3e-63 245.4 215 56.7
Peaxi162Scf00289g00084 Petunia axillaris HOM05D000901 ORTHO05D004766 4.3e-63 245.4 209 56.5
HanXRQChr14g0429411 Helianthus annuus HOM05D000901 ORTHO05D004766 9.6e-63 244.2 210 55.7
PGSC0003DMG400029329 Solanum tuberosum HOM05D000901 ORTHO05D004766 9.6e-63 244.2 210 52.4
ECA238G3494 Erigeron canadensis HOM05D000901 ORTHO05D004766 1.3e-62 243.8 195 57.4
SGA_v2.0_scaffold145G36086 Striga asiatica HOM05D000901 ORTHO05D004766 1.3e-62 243.8 205 57.6
Solyc12g094380.2 Solanum lycopersicum HOM05D000901 ORTHO05D004766 3.6e-62 242.3 214 51.4
Ah.00g000720 Amaranthus hybridus HOM05D000901 ORTHO05D004766 6.2e-62 241.5 189 58.2
Sopen12g031260 Solanum pennellii HOM05D000901 ORTHO05D004766 6.2e-62 241.5 214 51.4
Hund05157 Selenicereus undatus HOM05D000901 ORTHO05D004766 1.4e-61 240.4 209 54.1
Hund05162 Selenicereus undatus HOM05D000901 ORTHO05D004766 1.4e-61 240.4 209 54.1
AUR62013896 Chenopodium quinoa HOM05D000901 ORTHO05D004766 2.4e-61 239.6 224 54.5
Aa31LG7G4620 Aethionema arabicum HOM05D000901 ORTHO05D004766 6.9e-61 238.0 221 54.8
Actinidia37946 Actinidia chinensis HOM05D000901 ORTHO05D004766 9.0e-61 237.7 207 53.1
Cc10_g01220 Coffea canephora HOM05D000901 ORTHO05D004766 1.5e-60 236.9 219 51.6
DCAR_013892 Daucus carota HOM05D000901 ORTHO05D004766 7.6e-60 234.6 220 52.7
Sopen12g031250 Solanum pennellii HOM05D000901 ORTHO05D004766 2.4e-58 229.6 215 52.1
MSTRG.1155 Avicennia marina HOM05D000901 ORTHO05D004766 4.2e-58 228.8 220 50.5
MSTRG.1154 Avicennia marina HOM05D000901 ORTHO05D004766 1.6e-57 226.9 219 50.7
SalBow7G4280 Salvia bowleyana HOM05D000901 ORTHO05D004766 3.5e-57 225.7 194 55.2
DCAR_025124 Daucus carota HOM05D000901 ORTHO05D004766 1.0e-56 224.2 214 52.8
ATR0661G262 Amborella trichopoda HOM05D000901 ORTHO05D004766 6.6e-56 221.5 224 49.6
Nn5g30828 Nelumbo nucifera HOM05D000901 ORTHO05D004766 6.6e-56 221.5 223 48.4
CDE09G0289 Ceratophyllum demersum HOM05D000901 ORTHO05D004766 8.7e-56 221.1 218 50.9
unitig_32.g11240 Utricularia gibba HOM05D000901 ORTHO05D004766 1.6e-54 216.9 205 51.7
HPP92_025437 Vanilla planifolia HOM05D000901 ORTHO05D004766 4.8e-54 215.3 188 53.2
HPP92_022203 Vanilla planifolia HOM05D000901 ORTHO05D004766 1.1e-53 214.2 218 48.2
SEGI_34166 Sequoiadendron giganteum HOM05D000901 ORTHO05D004766 3.1e-53 212.6 213 48.8
Rhsim06G0013400 Rhododendron simsii HOM05D000901 ORTHO05D004766 7.6e-52 208.0 171 59.6
Os04g0227500 Oryza sativa ssp. japonica HOM05D000901 ORTHO05D004766 1.7e-51 206.8 226 46.0
HPP92_026881 Vanilla planifolia HOM05D000901 ORTHO05D004766 2.2e-51 206.5 193 49.7
Os09g0542200 Oryza sativa ssp. japonica HOM05D000901 ORTHO05D004766 3.2e-50 202.6 223 47.1
HPP92_003483 Vanilla planifolia HOM05D000901 ORTHO05D004766 3.5e-49 199.1 193 47.7
Zm00001eb103900 Zea mays HOM05D000901 ORTHO05D004766 6.0e-49 198.4 196 50.0
SGA_v2.0_scaffold292G47381 Striga asiatica HOM05D000901 ORTHO05D004766 1.0e-48 197.6 209 49.3
Psat7g082240 Pisum sativum HOM05D000901 ORTHO05D004766 6.7e-48 194.9 147 63.3
Thhalv10010046m.g Eutrema salsugineum HOM05D000901 ORTHO05D004766 8.7e-48 194.5 172 57.6
Rhsim07G0249300 Rhododendron simsii HOM05D000901 ORTHO05D004766 8.1e-46 188.0 193 50.8
Nitab4.5_0010135g0010 Nicotiana tabacum HOM05D000901 ORTHO05D004766 1.4e-45 187.2 212 46.2
Dinv31885 Davidia involucrata HOM05D000901 ORTHO05D001160 1.8e-45 186.8 127 66.1
Actinidia29763 Actinidia chinensis HOM05D000901 ORTHO05D004766 4.6e-41 172.2 202 45.0
MBI05_g08641_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 8.7e-40 167.9 128 60.9
SMO137G0357 Selaginella moellendorffii HOM05D000901 ORTHO05D004766 1.9e-39 166.8 190 42.1
BolC1t01801H Brassica oleracea HOM05D000901 ORTHO05D004766 2.6e-36 156.4 115 67.8
Lj2g0002110 Lotus japonicus HOM05D000901 ORTHO05D004766 2.2e-35 153.3 165 49.7
Mapoly0103s0033 Marchantia polymorpha HOM05D000901 ORTHO05D004766 3.8e-35 152.5 206 40.8
Pp3c23_11410 Physcomitrium patens HOM05D000901 ORTHO05D004766 1.9e-34 150.2 209 37.8
BcaB05g24967 Brassica carinata HOM05D000901 ORTHO05D001160 6.1e-33 145.2 108 61.1
Oeu048720.1 Olea europaea HOM05D000901 ORTHO05D004766 1.3e-32 144.1 101 67.3
Eucgr.L01283 Eucalyptus grandis HOM05D000901 ORTHO05D004766 2.3e-32 143.3 103 65.0
MBI05_g19938_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 4.3e-31 139.0 128 53.1
Haze_22688 Corylus avellana HOM05D000901 ORTHO05D004766 1.3e-30 137.5 95 63.2
Zm00001eb419520 Zea mays HOM05D000901 ORTHO05D004766 1.8e-29 133.7 143 47.6
C03p50790 Brassica napus HOM05D000901 ORTHO05D004766 5.3e-29 132.1 122 54.9
BcaC09g50963 Brassica carinata HOM05D000901 ORTHO05D004766 2.0e-28 130.2 102 64.7
BcaC01g02788 Brassica carinata HOM05D000901 ORTHO05D004766 3.4e-28 129.4 113 56.6
MSTRG.25272 Avicennia marina HOM05D000901 ORTHO05D004766 6.5e-27 125.2 113 55.8
C07p15020 Brassica napus HOM05D000901 ORTHO05D004766 1.1e-26 124.4 113 55.8
BolC6t40031H Brassica oleracea HOM05D000901 ORTHO05D004766 1.9e-26 123.6 136 47.1
MBI05_g47803_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 1.6e-25 120.6 148 45.3
Haze_22689 Corylus avellana HOM05D000901 ORTHO05D004766 4.3e-23 112.5 126 51.6
Ciclev10027478m.g Citrus clementina HOM05D000901 ORTHO05D004766 9.7e-23 111.3 92 59.8
CBR_g10910 Chara braunii HOM05D000901 ORTHO05D004766 3.7e-22 109.4 175 36.0
AUR62036699 Chenopodium quinoa HOM05D000901 ORTHO05D004766 1.4e-21 107.5 102 50.0
BolC6t37476H Brassica oleracea HOM05D000901 ORTHO05D004766 1.8e-21 107.1 82 64.6
C03p60410 Brassica napus HOM05D000901 ORTHO05D004766 2.4e-21 106.7 97 54.6
AagrBONN_evm.TU.Sc2ySwM_228.1931 Anthoceros agrestis HOM05D000901 ORTHO05D004766 3.1e-21 106.3 171 34.5
CiPaw.07G144400 Carya illinoinensis HOM05D000901 ORTHO05D004766 5.3e-21 105.5 84 53.6
BolC3t18302H Brassica oleracea HOM05D000901 ORTHO05D004766 1.9e-18 97.1 87 56.3
Rhsim07G0249200 Rhododendron simsii HOM05D000901 ORTHO05D004766 3.0e-16 89.7 63 60.3
BcaC09g50962 Brassica carinata HOM05D000901 ORTHO05D004766 2.0e-15 87.0 61 67.2
Eucgr.H01097 Eucalyptus grandis HOM05D000901 ORTHO05D004766 7.4e-15 85.1 67 59.7


User provided reference genes

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