Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN20G3048 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.4e-113 412.9 206 100.0
FvH4_2g14600 Fragaria vesca HOM05D004436 ORTHO05D005179 4.2e-89 331.6 244 75.4
FAN24G2018 Fragaria x ananassa HOM05D004436 ORTHO05D005179 7.1e-89 330.9 244 74.6
FAN15G1241 Fragaria x ananassa HOM05D004436 ORTHO05D005179 5.1e-63 245.0 198 69.7
FvH4_6g47280 Fragaria vesca HOM05D004436 ORTHO05D005179 1.1e-62 243.8 247 58.7
RcHm_v2.0_Chr2g0144531 Rosa chinensis HOM05D004436 ORTHO05D005179 1.4e-57 226.9 245 56.3
RcHm_v2.0_Chr2g0166351 Rosa chinensis HOM05D004436 ORTHO05D005179 2.5e-57 226.1 244 55.7
FAN27G1625 Fragaria x ananassa HOM05D004436 ORTHO05D005179 2.1e-56 223.0 200 65.0
FAN02G3564 Fragaria x ananassa HOM05D004436 ORTHO05D005179 6.1e-56 221.5 249 53.8
FvH4_6g34180 Fragaria vesca HOM05D004436 ORTHO05D005179 1.4e-55 220.3 249 53.4
FAN05G5343 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.4e-55 220.3 249 53.4
FAN09G2135 Fragaria x ananassa HOM05D004436 ORTHO05D005179 3.9e-55 218.8 249 53.4
FAN26G0630 Fragaria x ananassa HOM05D004436 ORTHO05D005179 5.3e-52 208.4 249 50.6
FAN14G2695 Fragaria x ananassa HOM05D004436 ORTHO05D005179 2.0e-51 206.5 285 46.7
FAN14G5104 Fragaria x ananassa HOM05D002326 ORTHO05D005179 1.0e-39 167.5 210 51.9
Prupe.3G044800 Prunus persica HOM05D004436 ORTHO05D005179 2.6e-38 162.9 257 39.3
Manes.11G023100 Manihot esculenta HOM05D004436 ORTHO05D005179 2.8e-37 159.5 247 40.9
CiPaw.01G221800 Carya illinoinensis HOM05D004436 ORTHO05D005179 3.1e-36 156.0 243 39.1
Eucgr.F03167 Eucalyptus grandis HOM05D004436 ORTHO05D005179 5.4e-36 155.2 244 39.3
CiPaw.05G181900 Carya illinoinensis HOM05D004436 ORTHO05D005179 2.7e-35 152.9 243 38.7
ClCG09G000840 Citrullus lanatus HOM05D004436 ORTHO05D005179 1.0e-34 151.0 237 38.8
MELO3C024372.2 Cucumis melo HOM05D004436 ORTHO05D005179 1.7e-34 150.2 240 39.2
TWI23G0436 Tripterygium wilfordii HOM05D004436 ORTHO05D005179 2.3e-34 149.8 243 38.7
CsaV3_7G034640 Cucumis sativus L. HOM05D004436 ORTHO05D005179 2.5e-33 146.4 240 37.9
MD09G1187900 Malus domestica HOM05D004436 ORTHO05D005179 3.3e-33 146.0 243 38.7
GSVIVG01016817001 Vitis vinifera HOM05D004436 ORTHO05D005179 5.5e-33 145.2 239 38.5
THA.LOC104804933 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 1.2e-32 144.1 248 39.5
Ciclev10025597m.g Citrus clementina HOM05D004436 ORTHO05D005179 1.6e-32 143.7 246 38.2
Potri.001G198600 Populus trichocarpa HOM05D004436 ORTHO05D005179 1.6e-32 143.7 242 38.4
Haze_15997 Corylus avellana HOM05D004436 ORTHO05D005179 2.1e-32 143.3 240 38.3
Manes.04G142200 Manihot esculenta HOM05D004436 ORTHO05D005179 6.1e-32 141.7 243 37.0
CANSAT56G1493 Cannabis sativa HOM05D004436 ORTHO05D005179 1.0e-31 141.0 245 38.4
Glyma.15G165300 Glycine max HOM05D004436 ORTHO05D005179 2.3e-31 139.8 242 37.2
Sed0020704 Sechium edule HOM05D004436 ORTHO05D005179 5.2e-31 138.7 243 37.0
Oeu044709.1 Olea europaea HOM05D004436 ORTHO05D005179 8.9e-31 137.9 238 38.2
Sed0007780 Sechium edule HOM05D004436 ORTHO05D005179 8.9e-31 137.9 240 35.8
Sabra01G0155800 Salix brachista HOM05D004436 ORTHO05D005179 5.7e-30 135.2 254 35.8
TAR375G0086 Trochodendron aralioides HOM05D004436 ORTHO05D005179 5.7e-30 135.2 245 35.5
arahy.Tifrunner.gnm1.ann1.0TY6IG Arachis hypogaea HOM05D004436 ORTHO05D005179 1.3e-29 134.0 247 35.6
arahy.Tifrunner.gnm1.ann1.4RDH3B Arachis hypogaea HOM05D004436 ORTHO05D005179 1.3e-29 134.0 247 35.2
Cpa.g.sc25.86 Carica papaya HOM05D004436 ORTHO05D005179 2.2e-29 133.3 246 36.6
PGR119G1065 Punica granatum HOM05D004436 ORTHO05D005179 8.3e-29 131.3 239 36.0
Aa31LG8G1130 Aethionema arabicum HOM05D004436 ORTHO05D005179 1.4e-28 130.6 250 36.4
Duzib205G0267 Durio zibethinus HOM05D004436 ORTHO05D005179 3.1e-28 129.4 242 38.0
Hma1.2p1_0496F.1_g166100 Hydrangea macrophylla HOM05D004436 ORTHO05D005179 5.4e-28 128.6 250 36.4
CSS0015890 Camellia sinensis var. sinensis HOM05D004436 ORTHO05D005179 7.0e-28 128.3 244 36.5
Oeu047041.1 Olea europaea HOM05D004436 ORTHO05D005179 9.2e-28 127.9 231 37.7
Dinv30366 Davidia involucrata HOM05D004436 ORTHO05D005179 1.2e-27 127.5 246 35.8
Cc04_g01610 Coffea canephora HOM05D004436 ORTHO05D005179 2.0e-27 126.7 241 35.7
Rhsim08G0236100 Rhododendron simsii HOM05D004436 ORTHO05D005179 2.0e-27 126.7 239 36.0
vmacro22224 Vaccinium macrocarpon HOM05D004436 ORTHO05D005179 4.5e-27 125.6 241 36.9
Actinidia32167 Actinidia chinensis HOM05D004436 ORTHO05D005179 5.9e-27 125.2 241 34.9
Phvul.009G236700 Phaseolus vulgaris HOM05D004436 ORTHO05D005179 5.9e-27 125.2 245 34.7
CAN.G540.4 Capsicum annuum HOM05D004436 ORTHO05D005179 1.0e-26 124.4 241 36.1
BcaC09g48383 Brassica carinata HOM05D004436 ORTHO05D005179 1.7e-26 123.6 247 35.2
C01p50660 Brassica napus HOM05D004436 ORTHO05D005179 1.7e-26 123.6 247 35.2
BolC1t05015H Brassica oleracea HOM05D004436 ORTHO05D005179 1.7e-26 123.6 247 35.2
Dinv03512 Davidia involucrata HOM05D004436 ORTHO05D005179 2.3e-26 123.2 246 35.4
Thhalv10020760m.g Eutrema salsugineum HOM05D004436 ORTHO05D005179 2.3e-26 123.2 238 36.1
Lj6g0016044 Lotus japonicus HOM05D004436 ORTHO05D005179 2.9e-26 122.9 245 34.7
Lalb_Chr08g0233321 Lupinus albus HOM05D004436 ORTHO05D005179 2.9e-26 122.9 244 33.6
CSS0033207 Camellia sinensis var. sinensis HOM05D004436 ORTHO05D005179 5.0e-26 122.1 232 36.6
Lj5A40G74 Lonicera japonica HOM05D004436 ORTHO05D005179 6.6e-26 121.7 247 35.6
A01p39710 Brassica napus HOM05D004436 ORTHO05D005179 8.6e-26 121.3 247 34.4
BraA01t04010Z Brassica rapa HOM05D004436 ORTHO05D005179 8.6e-26 121.3 247 34.4
Thecc.03G227200 Theobroma cacao HOM05D004436 ORTHO05D005179 1.9e-25 120.2 248 35.9
QL05p009436 Quercus lobata HOM05D004436 ORTHO05D005179 2.5e-25 119.8 122 52.5
TPR.G13789 Trifolium pratense HOM05D004436 ORTHO05D005179 2.5e-25 119.8 243 34.2
COL.COLO4_17027 Corchorus olitorius HOM05D004436 ORTHO05D005179 3.3e-25 119.4 243 37.4
Migut.D00948 Erythranthe guttata HOM05D004436 ORTHO05D005179 3.3e-25 119.4 238 36.1
Solyc06g053330.4 Solanum lycopersicum HOM05D004436 ORTHO05D005179 4.3e-25 119.0 174 42.5
Sopen06g018390 Solanum pennellii HOM05D004436 ORTHO05D005179 4.3e-25 119.0 174 42.5
Lsat_1_v5_gn_5_135221 Lactuca sativa HOM05D004436 ORTHO05D005179 5.6e-25 118.6 240 33.8
Sp3g12180 Schrenkiella parvula HOM05D004436 ORTHO05D005179 9.5e-25 117.9 238 34.9
Aqoxy2G00706 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 1.2e-24 117.5 242 32.6
Carub.0003s1351 Capsella rubella HOM05D004436 ORTHO05D005179 1.2e-24 117.5 239 34.7
ECA234G4408 Erigeron canadensis HOM05D004436 ORTHO05D005179 1.6e-24 117.1 238 34.9
PGSC0003DMG400016304 Solanum tuberosum HOM05D004436 ORTHO05D005179 1.6e-24 117.1 174 42.5
AL3G26120 Arabidopsis lyrata HOM05D004436 ORTHO05D005179 2.1e-24 116.7 243 34.2
FAN09G3702 Fragaria x ananassa HOM05D002326 ORTHO05D005179 4.7e-24 115.5 228 38.6
Ca_02096_v3 Cicer arietinum L. HOM05D004436 ORTHO05D005179 6.1e-24 115.2 244 34.4
HanXRQChr10g0312341 Helianthus annuus HOM05D004436 ORTHO05D005179 6.1e-24 115.2 247 34.0
AT3G13940 Arabidopsis thaliana HOM05D004436 ORTHO05D005179 8.0e-24 114.8 243 34.2
Nitab4.5_0000035g0090 Nicotiana tabacum HOM05D004436 ORTHO05D005179 8.0e-24 114.8 173 41.6
Medtr2g037880 Medicago truncatula HOM05D004436 ORTHO05D005179 1.4e-23 114.0 229 33.6
Medtr7g104810 Medicago truncatula HOM05D004436 ORTHO05D005179 1.8e-23 113.6 253 32.8
Rhsim10G0150900 Rhododendron simsii HOM05D004436 ORTHO05D005179 4.0e-23 112.5 243 32.9
BcaB04g20967 Brassica carinata HOM05D004436 ORTHO05D005179 5.2e-23 112.1 249 34.1
Medtr2g037460 Medicago truncatula HOM05D004436 ORTHO05D005179 5.2e-23 112.1 242 32.6
Nitab4.5_0004287g0020 Nicotiana tabacum HOM05D004436 ORTHO05D005179 5.2e-23 112.1 173 41.0
Nitab4.5_0012713g0010 Nicotiana tabacum HOM05D004436 ORTHO05D005179 5.2e-23 112.1 173 41.0
Peaxi162Scf00647g00219 Petunia axillaris HOM05D004436 ORTHO05D005179 6.8e-23 111.7 241 34.0
Hund20819 Selenicereus undatus HOM05D004436 ORTHO05D005179 1.2e-22 110.9 244 31.6
Atru.chr1.3808 Acer truncatum HOM05D004436 ORTHO05D005179 1.5e-22 110.5 217 35.5
Nn6g35749 Nelumbo nucifera HOM05D004436 ORTHO05D005179 1.5e-22 110.5 108 55.6
COL.COLO4_30482 Corchorus olitorius HOM05D004436 ORTHO05D005179 2.6e-22 109.8 244 35.7
Peaxi162Scf00943g00014 Petunia axillaris HOM05D004436 ORTHO05D005179 2.6e-22 109.8 241 33.6
TPR.G16505 Trifolium pratense HOM05D004436 ORTHO05D005179 3.4e-22 109.4 217 34.1
unitig_26.g9010 Utricularia gibba HOM05D000572 ORTHO05D002399 3.4e-22 109.4 212 38.2
MSTRG.22562 Avicennia marina HOM05D004436 ORTHO05D005179 4.4e-22 109.0 179 37.4
Lj6g0018808 Lotus japonicus HOM05D004436 ORTHO05D005179 4.4e-22 109.0 239 35.6
SGA_v2.0_scaffold68G22895 Striga asiatica HOM05D004436 ORTHO05D005179 4.4e-22 109.0 246 32.5
Gorai.003G182300 Gossypium raimondii HOM05D004436 ORTHO05D005179 7.5e-22 108.2 242 33.1
Gohir.D03G171700 Gossypium hirsutum HOM05D004436 ORTHO05D005179 1.7e-21 107.1 242 33.1
Oeu004353.1 Olea europaea HOM05D004436 ORTHO05D005179 2.9e-21 106.3 102 52.9
AUR62001510 Chenopodium quinoa HOM05D004436 ORTHO05D005179 4.9e-21 105.5 242 31.8
DCAR_026403 Daucus carota HOM05D004436 ORTHO05D005179 6.4e-21 105.1 248 29.4
Gohir.A03G000500 Gossypium hirsutum HOM05D004436 ORTHO05D005179 6.4e-21 105.1 242 33.1
Sc12g0010440 Simmondsia chinensis HOM05D004436 ORTHO05D005179 1.4e-20 104.0 243 32.5
Psat1g144000 Pisum sativum HOM05D004436 ORTHO05D005179 1.8e-20 103.6 241 30.7
Aqoxy2G02914 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 2.4e-20 103.2 110 49.1
AUR62009860 Chenopodium quinoa HOM05D004436 ORTHO05D005179 5.4e-20 102.1 242 31.0
CARHR088750 Cardamine hirsuta HOM05D004436 ORTHO05D005179 7.0e-20 101.7 248 31.9
Actinidia21779 Actinidia chinensis HOM05D004436 ORTHO05D005179 1.6e-19 100.5 197 34.0
CDE07G0038 Ceratophyllum demersum HOM05D004436 ORTHO05D005179 1.6e-19 100.5 259 29.3
EL10Ac7g16380 Beta vulgaris HOM05D004436 ORTHO05D005179 2.7e-19 99.8 240 30.8
Carub.0003s3547 Capsella rubella HOM05D004436 ORTHO05D005179 2.7e-19 99.8 176 38.1
FAN02G4131 Fragaria x ananassa HOM05D002326 ORTHO05D005179 2.7e-19 99.8 217 37.3
Ah.07g197300 Amaranthus hybridus HOM05D004436 ORTHO05D005179 6.0e-19 98.6 241 31.1
Peaxi162Scf00060g02815 Petunia axillaris HOM05D004436 ORTHO05D005179 7.8e-19 98.2 123 46.3
Ah.08g216510 Amaranthus hybridus HOM05D004436 ORTHO05D005179 1.3e-18 97.4 157 38.9
EL10Ac7g16378 Beta vulgaris HOM05D004436 ORTHO05D005179 2.5e-17 93.2 244 29.5
PSO724G1089 Papaver somniferum HOM05D004436 ORTHO05D005179 6.2e-16 88.6 161 39.1
DCAR_023423 Daucus carota HOM05D004436 ORTHO05D005179 8.0e-16 88.2 236 30.5
Dinv21190 Davidia involucrata HOM05D004436 ORTHO05D005179 1.8e-15 87.0 103 47.6
PSO135G0558 Papaver somniferum HOM05D004436 ORTHO05D005179 2.3e-15 86.7 161 38.5
ATR0762G049 Amborella trichopoda HOM05D004436 ORTHO05D005179 1.5e-14 84.0 93 50.5
SEGI_28110 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 7.5e-14 81.6 102 40.2
Os11g0615100 Oryza sativa ssp. japonica HOM05D004436 ORTHO05D005179 2.2e-13 80.1 246 30.1
Aqoxy7G00272 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 2.9e-13 79.7 150 34.0
PGSC0003DMG400002436 Solanum tuberosum HOM05D004436 ORTHO05D005179 3.7e-13 79.3 88 52.3
AUR62000997 Chenopodium quinoa HOM05D004436 ORTHO05D005179 1.1e-12 77.8 97 42.3
Zm00001eb166800 Zea mays HOM05D004436 ORTHO05D005179 1.0e-10 71.2 254 27.2
Haze_06394 Corylus avellana HOM05D004436 ORTHO05D005179 8.6e-10 68.2 160 30.0
Peaxi162Scf01131g00007 Petunia axillaris HOM05D004436 ORTHO05D005179 1.9e-09 67.0 81 46.9
HPP92_009424 Vanilla planifolia HOM05D004436 ORTHO05D005179 7.3e-09 65.1 125 32.0
Mapoly0063s0055 Marchantia polymorpha HOM05D004436 ORTHO05D005179 1.6e-08 63.9 120 35.8
AagrBONN_evm.TU.Sc2ySwM_368.2707 Anthoceros agrestis HOM05D004436 ORTHO05D005179 3.1e-07 59.7 117 35.9
MD17G1172300 Malus domestica HOM05D004436 ORTHO05D005179 4.0e-07 59.3 163 27.6


User provided reference genes

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