Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN20G2998 Fragaria x ananassa HOM05D006192 ORTHO05D008003 3.8e-282 974.2 483 100.0
FAN15G2167 Fragaria x ananassa HOM05D006192 ORTHO05D008003 2.4e-281 971.5 483 99.6
FvH4_2g31750 Fragaria vesca HOM05D006192 ORTHO05D008003 7.1e-281 969.9 483 99.4
FAN24G0058 Fragaria x ananassa HOM05D006192 ORTHO05D008003 2.7e-280 968.0 483 99.0
FAN27G0797 Fragaria x ananassa HOM05D006192 ORTHO05D008003 3.5e-280 967.6 483 99.6
RcHm_v2.0_Chr6g0311071 Rosa chinensis HOM05D006192 ORTHO05D008003 1.2e-275 952.6 483 97.7
Prupe.1G411000 Prunus persica HOM05D006192 ORTHO05D008003 7.9e-256 886.7 483 89.6
MD15G1058400 Malus domestica HOM05D006192 ORTHO05D008003 3.3e-254 881.3 484 89.7
Haze_18173 Corylus avellana HOM05D006192 ORTHO05D008003 1.0e-242 843.2 483 85.1
Cfa017964 Carpinus fangiana HOM05D006192 ORTHO05D008003 2.2e-242 842.0 483 84.7
CiPaw.15G038100 Carya illinoinensis HOM05D006192 ORTHO05D008003 2.2e-242 842.0 483 84.3
QL02p001073 Quercus lobata HOM05D006192 ORTHO05D008003 3.6e-240 834.7 482 84.2
Dinv27994 Davidia involucrata HOM05D006192 ORTHO05D008003 6.1e-240 833.9 483 84.5
Thecc.09G055000 Theobroma cacao HOM05D006192 ORTHO05D008003 7.4e-238 827.0 482 83.6
Actinidia30319 Actinidia chinensis HOM05D006192 ORTHO05D008003 2.8e-237 825.1 483 83.6
Gorai.009G044500 Gossypium raimondii HOM05D006192 ORTHO05D008003 1.8e-236 822.4 482 82.8
Gohir.A05G041700 Gossypium hirsutum HOM05D006192 ORTHO05D008003 4.1e-236 821.2 482 82.6
Gohir.D05G043400 Gossypium hirsutum HOM05D006192 ORTHO05D008003 1.5e-235 819.3 482 82.0
Dinv22891 Davidia involucrata HOM05D006192 ORTHO05D008003 2.0e-235 818.9 483 83.0
Potri.006G228000 Populus trichocarpa HOM05D006192 ORTHO05D008003 2.6e-235 818.5 483 82.8
Lj7A269G19 Lonicera japonica HOM05D006192 ORTHO05D008003 7.7e-235 817.0 483 82.0
Duzib187G0943 Durio zibethinus HOM05D006192 ORTHO05D008003 2.2e-234 815.5 482 83.4
COL.COLO4_21071 Corchorus olitorius HOM05D006192 ORTHO05D008003 5.0e-234 814.3 482 82.4
Nn7g37295 Nelumbo nucifera HOM05D006192 ORTHO05D008003 6.5e-234 813.9 483 82.4
CANSAT25G1130 Cannabis sativa HOM05D006192 ORTHO05D008003 3.2e-233 811.6 483 83.2
Rhsim07G0125300 Rhododendron simsii HOM05D006192 ORTHO05D008003 3.2e-233 811.6 483 83.2
MELO3C016873.2 Cucumis melo HOM05D006192 ORTHO05D008003 1.2e-232 809.7 484 82.6
CSS0041370 Camellia sinensis var. sinensis HOM05D006192 ORTHO05D008003 8.0e-232 807.0 483 82.0
CsaV3_4G035660 Cucumis sativus L. HOM05D006192 ORTHO05D008003 1.1e-230 803.1 484 81.4
Ciclev10008149m.g Citrus clementina HOM05D006192 ORTHO05D008003 5.7e-230 800.8 483 81.8
PSO339G5117 Papaver somniferum HOM05D006192 ORTHO05D008003 5.7e-230 800.8 489 79.8
Manes.03G048700 Manihot esculenta HOM05D006192 ORTHO05D008003 7.4e-230 800.4 485 81.4
PSO384G1492 Papaver somniferum HOM05D006192 ORTHO05D008003 9.7e-230 800.0 489 79.8
ClCG05G017890 Citrullus lanatus HOM05D006192 ORTHO05D008003 2.2e-229 798.9 484 81.4
Sed0014899 Sechium edule HOM05D006192 ORTHO05D008003 6.3e-229 797.3 484 81.0
arahy.Tifrunner.gnm1.ann1.S5W95P Arachis hypogaea HOM05D006192 ORTHO05D008003 7.7e-227 790.4 483 80.7
Oeu003988.1 Olea europaea HOM05D006192 ORTHO05D008003 3.8e-226 788.1 483 80.3
TWI34G1683 Tripterygium wilfordii HOM05D006192 ORTHO05D008003 6.5e-226 787.3 483 80.1
PGSC0003DMG400019063 Solanum tuberosum HOM05D006192 ORTHO05D008003 2.5e-225 785.4 483 80.3
arahy.Tifrunner.gnm1.ann1.44XN4P Arachis hypogaea HOM05D006192 ORTHO05D008003 5.5e-225 784.3 483 80.1
Sabra06G0176500 Salix brachista HOM05D006192 ORTHO05D008003 5.5e-225 784.3 514 76.1
Oeu009349.1 Olea europaea HOM05D006192 ORTHO05D008003 9.4e-225 783.5 483 79.3
Sopen08g018650 Solanum pennellii HOM05D006192 ORTHO05D008003 4.7e-224 781.2 483 79.7
Eucgr.C00658 Eucalyptus grandis HOM05D006192 ORTHO05D008003 6.1e-224 780.8 484 78.7
Migut.A00129 Erythranthe guttata HOM05D006192 ORTHO05D008003 2.3e-223 778.9 485 78.6
Cc08_g10700 Coffea canephora HOM05D006192 ORTHO05D008003 6.7e-223 777.3 485 78.6
DCAR_000802 Daucus carota HOM05D006192 ORTHO05D008003 6.7e-223 777.3 484 78.7
Nitab4.5_0002829g0050 Nicotiana tabacum HOM05D006192 ORTHO05D008003 1.2e-222 776.5 483 79.5
Nitab4.5_0005436g0010 Nicotiana tabacum HOM05D006192 ORTHO05D008003 2.6e-222 775.4 483 79.3
THA.LOC104818573 Tarenaya hassleriana HOM05D006192 ORTHO05D008003 2.6e-222 775.4 483 79.3
Solyc08g063080.3 Solanum lycopersicum HOM05D006192 ORTHO05D008003 7.5e-222 773.9 483 79.3
Peaxi162Scf00327g00612 Petunia axillaris HOM05D006192 ORTHO05D008003 9.7e-222 773.5 484 79.3
Glyma.19G133100 Glycine max HOM05D006192 ORTHO05D008003 1.3e-221 773.1 484 79.1
AUR62039119 Chenopodium quinoa HOM05D006192 ORTHO05D008003 3.7e-221 771.5 483 79.3
AUR62043945 Chenopodium quinoa HOM05D006192 ORTHO05D008003 3.7e-221 771.5 483 79.3
Lalb_Chr20g0110241 Lupinus albus HOM05D006192 ORTHO05D008003 1.8e-220 769.2 481 79.4
Ah.11g044810 Amaranthus hybridus HOM05D006192 ORTHO05D008003 2.4e-220 768.8 483 78.9
MBI16_g06012_MAGBIO Magnolia biondii HOM05D006192 ORTHO05D008003 2.4e-220 768.8 485 79.0
Glyma.03G131100 Glycine max HOM05D006192 ORTHO05D008003 3.1e-220 768.5 481 79.0
CAN.G9.23 Capsicum annuum HOM05D006192 ORTHO05D008003 4.1e-220 768.1 483 78.5
AUR62009135 Chenopodium quinoa HOM05D006192 ORTHO05D008003 4.1e-220 768.1 483 78.7
PGR031G3391 Punica granatum HOM05D006192 ORTHO05D008003 5.3e-220 767.7 488 79.3
SalBow4G2073 Salvia bowleyana HOM05D006192 ORTHO05D008003 9.1e-220 766.9 485 78.4
Medtr7g090510 Medicago truncatula HOM05D006192 ORTHO05D008003 1.2e-219 766.5 484 77.9
VMungo1383G3565 Vigna mungo HOM05D006192 ORTHO05D008003 2.7e-219 765.4 485 78.6
EL10Ac2g03859 Beta vulgaris HOM05D006192 ORTHO05D008003 4.5e-219 764.6 483 77.4
Lsat_1_v5_gn_3_23900 Lactuca sativa HOM05D006192 ORTHO05D008003 4.5e-219 764.6 483 78.3
SalBow5G1678 Salvia bowleyana HOM05D006192 ORTHO05D008003 7.7e-219 763.8 485 78.4
Phvul.001G127100 Phaseolus vulgaris HOM05D006192 ORTHO05D008003 1.3e-218 763.1 485 77.5
Hund19447 Selenicereus undatus HOM05D006192 ORTHO05D008003 2.9e-218 761.9 483 78.5
TPR.G32742 Trifolium pratense HOM05D006192 ORTHO05D008003 2.9e-218 761.9 484 77.7
ECA246G2418 Erigeron canadensis HOM05D006192 ORTHO05D008003 3.8e-218 761.5 483 77.8
Ca_08416_v3 Cicer arietinum L. HOM05D006192 ORTHO05D008003 1.1e-217 760.0 481 78.0
Sc01g0008030 Simmondsia chinensis HOM05D006192 ORTHO05D008003 1.1e-217 760.0 483 77.8
AT4G33030 Arabidopsis thaliana HOM05D006192 ORTHO05D008003 7.2e-217 757.3 486 77.6
Sp7g30790 Schrenkiella parvula HOM05D006192 ORTHO05D008003 3.6e-216 755.0 484 78.9
HanXRQChr06g0173891 Helianthus annuus HOM05D006192 ORTHO05D008003 8.0e-216 753.8 485 77.5
Lj1g0026013 Lotus japonicus HOM05D006192 ORTHO05D008003 1.0e-215 753.4 484 78.1
CARHR241040 Cardamine hirsuta HOM05D006192 ORTHO05D008003 5.2e-215 751.1 485 77.3
Psat3g076360 Pisum sativum HOM05D006192 ORTHO05D008003 5.2e-215 751.1 482 76.8
AL7G18640 Arabidopsis lyrata HOM05D006192 ORTHO05D008003 1.2e-214 750.0 484 77.5
MSTRG.25952 Avicennia marina HOM05D006192 ORTHO05D008003 2.6e-214 748.8 419 85.9
Thhalv10025085m.g Eutrema salsugineum HOM05D006192 ORTHO05D008003 4.4e-214 748.0 486 77.4
Carub.0007s0745 Capsella rubella HOM05D006192 ORTHO05D008003 2.8e-213 745.3 483 77.2
SGA_v2.0_scaffold20G09220 Striga asiatica HOM05D006192 ORTHO05D008003 4.8e-213 744.6 483 76.8
C01p05650 Brassica napus HOM05D006192 ORTHO05D008003 1.2e-211 740.0 488 76.0
BolC1t00544H Brassica oleracea HOM05D006192 ORTHO05D008003 1.2e-211 740.0 488 76.0
GSVIVG01035394001 Vitis vinifera HOM05D006192 ORTHO05D008003 1.0e-210 736.9 486 76.3
Os05g0387200 Oryza sativa ssp. japonica HOM05D006192 ORTHO05D008003 1.7e-210 736.1 485 76.9
A03p61760 Brassica napus HOM05D006192 ORTHO05D008003 6.5e-210 734.2 395 88.4
C07p59470 Brassica napus HOM05D006192 ORTHO05D008003 8.6e-210 733.8 397 87.4
BraA01t00499Z Brassica rapa HOM05D006192 ORTHO05D008003 8.6e-210 733.8 393 88.3
BcaC09g52100 Brassica carinata HOM05D006192 ORTHO05D008003 1.1e-209 733.4 396 87.6
A01p05160 Brassica napus HOM05D006192 ORTHO05D008003 1.5e-209 733.0 396 87.6
BraA03t15213Z Brassica rapa HOM05D006192 ORTHO05D008003 2.5e-209 732.3 482 75.7
BolC7t46390H Brassica oleracea HOM05D006192 ORTHO05D008003 2.1e-208 729.2 393 88.0
Zm00001eb347070 Zea mays HOM05D006192 ORTHO05D008003 2.1e-208 729.2 484 76.2
Aa31LG4G11110 Aethionema arabicum HOM05D006192 ORTHO05D008003 2.0e-206 722.6 393 87.0
ATR0307G063 Amborella trichopoda HOM05D006192 ORTHO05D008003 4.1e-204 714.9 479 76.0
Pp3c10_9630 Physcomitrium patens HOM05D006192 ORTHO05D008003 1.8e-196 689.5 428 77.1
CBR_g23789 Chara braunii HOM05D006192 ORTHO05D008003 6.6e-194 681.0 429 76.5
Mapoly0010s0049 Marchantia polymorpha HOM05D006192 ORTHO05D008003 8.6e-194 680.6 482 69.9
SMO239G0161 Selaginella moellendorffii HOM05D006192 ORTHO05D008003 1.1e-191 673.7 450 73.3
BcaNung02151 Brassica carinata HOM05D006192 ORTHO05D008003 1.4e-191 673.3 397 81.9
AagrBONN_evm.TU.Sc2ySwM_368.1072 Anthoceros agrestis HOM05D006192 ORTHO05D008003 4.0e-191 671.8 389 80.5
HPP92_006663 Vanilla planifolia HOM05D006192 ORTHO05D008003 6.4e-189 664.5 448 74.8
TAR369G0638 Trochodendron aralioides HOM05D006192 ORTHO05D008003 1.0e-186 657.1 383 83.0
Cre16.g656400 Chlamydomonas reinhardtii HOM05D006192 ORTHO05D008003 8.1e-176 620.9 401 72.8
SalBow5G5187 Salvia bowleyana HOM05D006192 ORTHO05D008003 1.1e-169 600.5 432 71.1
MCO15G376 Micromonas commoda HOM05D006192 ORTHO05D008003 1.2e-168 597.0 389 69.2
unitig_748.g7527 Utricularia gibba HOM05D006192 ORTHO05D008003 1.7e-165 586.6 483 63.6
PRCOL_00003517 Prasinoderma coloniale HOM05D006192 ORTHO05D008003 6.4e-165 584.7 397 66.5
Atru.chr7.1090 Acer truncatum HOM05D006192 ORTHO05D008003 4.9e-157 558.5 289 94.1
Lj7A268T22 Lonicera japonica HOM05D006192 ORTHO05D008003 4.9e-157 558.5 289 93.1
SEGI_22284 Sequoiadendron giganteum HOM05D006192 ORTHO05D008003 4.9e-141 505.4 328 75.6
CDE02G3162 Ceratophyllum demersum HOM05D006192 ORTHO05D008003 2.6e-134 483.0 341 71.0
SalBow8G2204 Salvia bowleyana HOM05D006192 ORTHO05D008003 2.5e-100 370.2 237 75.5
CDE04G0209 Ceratophyllum demersum HOM05D006192 ORTHO05D008003 3.1e-95 353.2 271 67.2
CDE04G3367 Ceratophyllum demersum HOM05D006192 ORTHO05D008003 2.0e-81 307.4 172 83.7
MD08G1063500 Malus domestica HOM05D006192 ORTHO05D008003 2.1e-62 244.2 130 87.7
SalBow8G3463 Salvia bowleyana HOM05D006192 ORTHO05D008003 5.1e-61 239.6 196 61.7
SalBow8G1594 Salvia bowleyana HOM05D006192 ORTHO05D008003 4.3e-60 236.5 135 85.2
SEGI_03729 Sequoiadendron giganteum HOM05D006192 ORTHO05D008003 1.5e-57 228.0 139 78.4
SalBow5G3520 Salvia bowleyana HOM05D000200 ORTHO05D000262 7.6e-49 199.1 140 74.3
Atru.chr7.1089 Acer truncatum HOM05D006192 ORTHO05D008003 1.3e-45 188.3 157 61.8
SalBow4G3004 Salvia bowleyana HOM05D006192 ORTHO05D001699 1.8e-37 161.4 94 85.1
SalBow8G4783 Salvia bowleyana HOM05D006192 ORTHO05D358531 8.4e-32 142.5 105 67.6
BcaC01g05298 Brassica carinata HOM05D006192 ORTHO05D091607 5.7e-12 76.6 59 61.0
Mapoly0068s0034 Marchantia polymorpha HOM05D000776 ORTHO05D001624 2.4e-10 71.2 285 25.3
HPP92_013398 Vanilla planifolia HOM05D000776 ORTHO05D001624 5.9e-09 66.6 151 29.8
Zm00001eb098110 Zea mays HOM05D000776 ORTHO05D001624 3.2e-07 60.8 153 29.4
Mapoly0065s0029 Marchantia polymorpha HOM05D000776 ORTHO05D001624 4.2e-07 60.5 149 28.2
Nn2g15146 Nelumbo nucifera HOM05D000776 ORTHO05D001624 1.6e-06 58.5 152 28.9
PSO170G4404 Papaver somniferum HOM05D000776 ORTHO05D001624 1.6e-06 58.5 152 28.3
SEGI_37678 Sequoiadendron giganteum HOM05D000776 ORTHO05D001624 1.6e-06 58.5 129 29.5
PSO063G2869 Papaver somniferum HOM05D000776 ORTHO05D001624 2.1e-06 58.2 152 28.3
Ciclev10020907m.g Citrus clementina HOM05D000776 ORTHO05D001624 3.6e-06 57.4 158 27.2
SGA_v2.0_scaffold126G33852 Striga asiatica HOM05D000739 ORTHO05D001171 3.6e-06 57.4 309 22.3


User provided reference genes

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