Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN20G2913 Fragaria x ananassa HOM05D004041 ORTHO05D004564 3.3e-222 775.8 814 100.0
FAN15G2764 Fragaria x ananassa HOM05D004041 ORTHO05D004564 1.2e-179 634.4 819 87.9
FAN24G0669 Fragaria x ananassa HOM05D004041 ORTHO05D004564 7.7e-179 631.7 815 88.5
FvH4_2g30620 Fragaria vesca HOM05D004041 ORTHO05D004564 6.5e-178 628.6 815 81.6
FAN27G0182 Fragaria x ananassa HOM05D004041 ORTHO05D004564 8.8e-175 618.2 819 87.3
RcHm_v2.0_Chr6g0312381 Rosa chinensis HOM05D004041 ORTHO05D004564 2.1e-112 411.0 833 68.7
Prupe.1G463200 Prunus persica HOM05D004041 ORTHO05D004564 2.7e-67 261.2 201 72.6
MD15G1111100 Malus domestica HOM05D004041 ORTHO05D004564 6.1e-67 260.0 240 70.4
Eucgr.H02470 Eucalyptus grandis HOM05D004041 ORTHO05D004564 1.7e-61 241.9 204 68.6
MD08G1133100 Malus domestica HOM05D004041 ORTHO05D004564 1.7e-61 241.9 203 68.5
PGR119G2538 Punica granatum HOM05D004041 ORTHO05D004564 4.7e-59 233.8 201 67.2
Sed0021561 Sechium edule HOM05D004041 ORTHO05D004564 8.8e-58 229.6 240 57.5
Manes.03G046500 Manihot esculenta HOM05D004041 ORTHO05D004564 3.4e-57 227.6 208 63.0
ClCG08G012810 Citrullus lanatus HOM05D004041 ORTHO05D004564 4.4e-57 227.3 206 65.5
Atru.chr4.1391 Acer truncatum HOM05D004041 ORTHO05D004564 9.8e-57 226.1 210 61.4
CsaV3_2G031560 Cucumis sativus L. HOM05D004041 ORTHO05D004564 1.3e-56 225.7 212 60.8
TWI15G0012 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 6.3e-56 223.4 208 61.5
arahy.Tifrunner.gnm1.ann1.1H4CIU Arachis hypogaea HOM05D004041 ORTHO05D004564 2.7e-54 218.0 211 58.8
Lj1g0018267 Lotus japonicus HOM05D004041 ORTHO05D004564 7.7e-54 216.5 212 59.4
Sabra06G0181500 Salix brachista HOM05D004041 ORTHO05D004564 1.0e-53 216.1 253 56.1
Ciclev10007432m.g Citrus clementina HOM05D004041 ORTHO05D004564 2.3e-53 214.9 208 58.2
Glyma.17G200600 Glycine max HOM05D004041 ORTHO05D004564 2.3e-53 214.9 238 55.5
Glyma.14G131900 Glycine max HOM05D004041 ORTHO05D004564 2.9e-53 214.5 238 55.9
Potri.006G233000 Populus trichocarpa HOM05D004041 ORTHO05D004564 2.9e-53 214.5 206 60.7
CiPaw.07G050600 Carya illinoinensis HOM05D004041 ORTHO05D004564 1.1e-52 212.6 246 57.3
GSVIVG01035595001 Vitis vinifera HOM05D004041 ORTHO05D004564 1.5e-52 212.2 202 62.4
Aa31LG4G18100 Aethionema arabicum HOM05D004041 ORTHO05D004564 1.9e-52 211.8 207 60.9
CiPaw.07G215400 Carya illinoinensis HOM05D004041 ORTHO05D004564 4.2e-52 210.7 239 59.0
Lalb_Chr11g0064071 Lupinus albus HOM05D004041 ORTHO05D004564 7.2e-52 209.9 208 57.2
QL12p024601 Quercus lobata HOM05D004041 ORTHO05D004564 2.1e-51 208.4 249 56.2
HanXRQChr10g0299041 Helianthus annuus HOM05D004041 ORTHO05D004564 8.0e-51 206.5 173 64.2
CARHR158630 Cardamine hirsuta HOM05D004041 ORTHO05D004564 4.0e-50 204.1 210 59.5
Phvul.001G088700 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 4.0e-50 204.1 205 58.0
Ca_12887_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 5.2e-50 203.8 207 57.5
Lj8C419G2 Lonicera japonica HOM05D004041 ORTHO05D004564 5.2e-50 203.8 151 74.8
Phvul.006G038688 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 5.2e-50 203.8 238 52.9
VMungo1383G3608 Vigna mungo HOM05D004041 ORTHO05D004564 5.2e-50 203.8 210 57.1
Lsat_1_v5_gn_4_74560 Lactuca sativa HOM05D004041 ORTHO05D004564 1.5e-49 202.2 210 56.2
Actinidia12476 Actinidia chinensis HOM05D004041 ORTHO05D004564 5.7e-49 200.3 288 45.5
TWI60G0712 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 1.3e-48 199.1 167 65.3
Thhalv10010217m.g Eutrema salsugineum HOM05D004041 ORTHO05D004564 3.7e-48 197.6 209 58.4
Psat6g031640 Pisum sativum HOM05D004041 ORTHO05D004564 6.3e-48 196.8 202 59.9
Sp5g12500 Schrenkiella parvula HOM05D004041 ORTHO05D004564 2.4e-47 194.9 209 57.4
AL5G29450 Arabidopsis lyrata HOM05D004041 ORTHO05D004564 5.4e-47 193.7 211 57.3
BcaB01g00690 Brassica carinata HOM05D004041 ORTHO05D004564 5.4e-47 193.7 208 59.1
BcaC07g39425 Brassica carinata HOM05D004041 ORTHO05D004564 9.2e-47 193.0 206 58.7
C08p24610 Brassica napus HOM05D004041 ORTHO05D004564 9.2e-47 193.0 206 58.7
BolC8t50077H Brassica oleracea HOM05D004041 ORTHO05D004564 9.2e-47 193.0 206 58.7
Hund03240 Selenicereus undatus HOM05D004041 ORTHO05D004564 9.2e-47 193.0 212 55.7
EL10Ac2g03659 Beta vulgaris HOM05D004041 ORTHO05D004564 2.7e-46 191.4 206 58.3
Nitab4.5_0000288g0130 Nicotiana tabacum HOM05D004041 ORTHO05D004564 4.5e-46 190.7 239 53.1
Lalb_Chr23g0268921 Lupinus albus HOM05D004041 ORTHO05D004564 7.8e-46 189.9 205 57.1
DCAR_004521 Daucus carota HOM05D004041 ORTHO05D004564 1.3e-45 189.1 211 53.6
CSS0017741 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 2.3e-45 188.3 205 54.6
AT3G49601 Arabidopsis thaliana HOM05D004041 ORTHO05D004564 2.9e-45 188.0 211 56.9
Nitab4.5_0008752g0030 Nicotiana tabacum HOM05D004041 ORTHO05D004564 2.9e-45 188.0 190 60.5
Peaxi162Scf00213g01515 Petunia axillaris HOM05D004041 ORTHO05D004564 3.8e-45 187.6 149 67.1
THA.LOC104799001 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 5.0e-45 187.2 195 58.5
TAR383G1094 Trochodendron aralioides HOM05D004041 ORTHO05D004564 6.6e-45 186.8 222 53.2
A06p18110 Brassica napus HOM05D004041 ORTHO05D004564 8.6e-45 186.4 203 56.7
Solyc08g074440.4 Solanum lycopersicum HOM05D004041 ORTHO05D004564 8.6e-45 186.4 241 52.3
PGSC0003DMG401029567 Solanum tuberosum HOM05D004041 ORTHO05D004564 8.6e-45 186.4 186 60.2
COL.COLO4_09287 Corchorus olitorius HOM05D004041 ORTHO05D004564 1.1e-44 186.0 204 53.9
BraA06t24900Z Brassica rapa HOM05D004041 ORTHO05D004564 1.5e-44 185.7 204 56.4
Sc06g0000040 Simmondsia chinensis HOM05D004041 ORTHO05D004564 1.5e-44 185.7 226 52.2
Sc06g0001360 Simmondsia chinensis HOM05D004041 ORTHO05D004564 1.5e-44 185.7 226 52.2
Thecc.10G127600 Theobroma cacao HOM05D004041 ORTHO05D004564 1.9e-44 185.3 205 55.1
CANSAT21G2467 Cannabis sativa HOM05D004041 ORTHO05D004564 2.5e-44 184.9 191 63.4
Sopen08g023080 Solanum pennellii HOM05D004041 ORTHO05D004564 2.5e-44 184.9 151 68.9
AUR62020692 Chenopodium quinoa HOM05D004041 ORTHO05D004564 3.3e-44 184.5 208 55.8
AUR62028033 Chenopodium quinoa HOM05D004041 ORTHO05D004564 3.3e-44 184.5 208 55.3
CAN.G195.14 Capsicum annuum HOM05D004041 ORTHO05D004564 2.1e-43 181.8 151 66.9
Duzib106G1246 Durio zibethinus HOM05D004041 ORTHO05D004564 8.0e-43 179.9 205 52.2
ECA234G4028 Erigeron canadensis HOM05D004041 ORTHO05D004564 1.0e-42 179.5 201 53.2
SalBow8G3032 Salvia bowleyana HOM05D004041 ORTHO05D004564 1.4e-42 179.1 180 58.3
Aqoxy7G02570 Aquilegia oxysepala HOM05D004041 ORTHO05D004564 1.8e-42 178.7 178 56.2
Migut.E01401 Erythranthe guttata HOM05D004041 ORTHO05D004564 3.0e-42 177.9 205 52.2
Gorai.010G210300 Gossypium raimondii HOM05D004041 ORTHO05D004564 1.5e-41 175.6 206 51.5
Gohir.A06G171600 Gossypium hirsutum HOM05D004041 ORTHO05D004564 2.0e-41 175.3 206 51.9
Cc03_g09420 Coffea canephora HOM05D004041 ORTHO05D004564 2.6e-41 174.9 241 47.3
Gohir.D06G179700 Gossypium hirsutum HOM05D004041 ORTHO05D004564 2.6e-41 174.9 206 51.0
Duzib128G1534 Durio zibethinus HOM05D004041 ORTHO05D004564 9.8e-41 172.9 205 52.2
MBI11_g09070_MAGBIO Magnolia biondii HOM05D004041 ORTHO05D004564 2.9e-40 171.4 207 51.2
PSO210G2134 Papaver somniferum HOM05D004041 ORTHO05D004564 4.9e-40 170.6 144 63.9
PSO541G4756 Papaver somniferum HOM05D004041 ORTHO05D004564 4.9e-40 170.6 172 57.6
Thecc.10G128300 Theobroma cacao HOM05D004041 ORTHO05D004564 4.9e-40 170.6 156 59.6
Lj8C415T2 Lonicera japonica HOM05D004041 ORTHO05D004564 1.1e-39 169.5 120 75.8
CDE07G1163 Ceratophyllum demersum HOM05D004041 ORTHO05D004564 3.2e-39 167.9 191 50.3
Glyma.11G174282 Glycine max HOM05D004041 ORTHO05D004564 9.2e-39 166.4 128 64.8
Thecc.10G128100 Theobroma cacao HOM05D004041 ORTHO05D004564 9.2e-39 166.4 156 60.3
Ah.10g033610 Amaranthus hybridus HOM05D004041 ORTHO05D004564 2.0e-38 165.2 208 53.4
PSO832G4585 Papaver somniferum HOM05D004041 ORTHO05D004564 6.0e-38 163.7 144 61.8
Gohir.D06G179400 Gossypium hirsutum HOM05D004041 ORTHO05D004564 2.3e-37 161.8 148 59.5
Gorai.010G210000 Gossypium raimondii HOM05D004041 ORTHO05D004564 3.0e-37 161.4 148 58.8
Nitab4.5_0000648g0040 Nicotiana tabacum HOM05D004041 ORTHO05D004564 3.0e-37 161.4 160 61.9
Pp3c3_10000 Physcomitrium patens HOM05D004041 ORTHO05D004564 3.9e-37 161.0 155 58.1
Cpa.g.sc117.15 Carica papaya HOM05D004041 ORTHO05D004564 5.0e-37 160.6 120 69.2
TPR.G10377 Trifolium pratense HOM05D004041 ORTHO05D004564 8.6e-37 159.8 102 77.5
SGA_v2.0_scaffold121G33039 Striga asiatica HOM05D003985 ORTHO05D005253 1.9e-36 158.7 211 47.9
Medtr1g010100 Medicago truncatula HOM05D004041 ORTHO05D004564 3.3e-36 157.9 102 76.5
ATR0665G601 Amborella trichopoda HOM05D004041 ORTHO05D004564 4.3e-36 157.5 203 48.3
TPR.G20436 Trifolium pratense HOM05D004041 ORTHO05D004564 9.5e-36 156.4 102 75.5
vmacro00640 Vaccinium macrocarpon HOM05D004041 ORTHO05D004564 2.1e-35 155.2 114 68.4
CSS0020148 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 2.8e-35 154.8 103 76.7
Mapoly0057s0059 Marchantia polymorpha HOM05D004041 ORTHO05D004564 3.6e-35 154.5 176 50.6
RcHm_v2.0_Chr4g0410401 Rosa chinensis HOM05D004041 ORTHO05D004564 6.2e-35 153.7 90 85.6
SEGI_30814 Sequoiadendron giganteum HOM05D004041 ORTHO05D004564 1.4e-34 152.5 176 52.8
Nn5g27656 Nelumbo nucifera HOM05D004041 ORTHO05D004564 1.8e-34 152.1 106 73.6
THA.LOC109116738 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 2.3e-34 151.8 134 63.4
Oeu026036.1 Olea europaea HOM05D004041 ORTHO05D004564 4.0e-34 151.0 116 69.0
Carub.0005s1594 Capsella rubella HOM05D004041 ORTHO05D004564 2.9e-32 144.8 206 50.5
Zm00001eb344480 Zea mays HOM05D004041 ORTHO05D004564 4.1e-31 141.0 218 46.3
AagrBONN_evm.TU.Sc2ySwM_344.5195 Anthoceros agrestis HOM05D004041 ORTHO05D004564 1.2e-30 139.4 188 45.2
CBR_g88579 Chara braunii HOM05D004041 ORTHO05D004564 3.5e-30 137.9 178 45.5
BcaC09g49964 Brassica carinata HOM05D004041 ORTHO05D004564 1.3e-29 136.0 185 49.2
TPR.G211 Trifolium pratense HOM05D004041 ORTHO05D004564 7.3e-28 130.2 89 73.0
TAR626G0117 Trochodendron aralioides HOM05D002987 ORTHO05D003359 9.5e-28 129.8 95 69.5
Ah.11g044190 Amaranthus hybridus HOM05D004041 ORTHO05D004564 6.2e-27 127.1 117 61.5
C01p30700 Brassica napus HOM05D004041 ORTHO05D004564 8.1e-27 126.7 144 54.9
Zm00001eb204710 Zea mays HOM05D004041 ORTHO05D004564 1.8e-26 125.6 191 44.0
Mapoly0057s0051 Marchantia polymorpha HOM05D004041 ORTHO05D004564 1.2e-25 122.9 111 59.5
Gohir.A06G171302 Gossypium hirsutum HOM05D004041 ORTHO05D004564 1.5e-25 122.5 126 55.6
Nn8g41252 Nelumbo nucifera HOM05D004041 ORTHO05D004564 2.0e-25 122.1 142 50.7
ATR0665G238 Amborella trichopoda HOM05D004041 ORTHO05D004564 4.4e-25 120.9 109 56.9
Cpa.g.c48129 Carica papaya HOM05D004041 ORTHO05D004564 9.9e-25 119.8 80 75.0
Dinv37476 Davidia involucrata HOM05D000079 ORTHO05D000211 4.1e-23 114.4 209 42.6
Dinv09449 Davidia involucrata HOM05D003985 ORTHO05D005253 9.2e-23 113.2 198 42.9
Migut.A00845 Erythranthe guttata HOM05D004041 ORTHO05D004564 2.1e-22 112.1 144 47.2
Migut.A00847 Erythranthe guttata HOM05D004041 ORTHO05D004564 2.1e-22 112.1 144 47.2
Zm00001eb204730 Zea mays HOM05D004041 ORTHO05D004564 2.1e-22 112.1 105 58.1
Zm00001eb204800 Zea mays HOM05D004041 ORTHO05D004564 3.5e-22 111.3 108 53.7
Zm00001eb204790 Zea mays HOM05D004041 ORTHO05D004564 2.3e-21 108.6 109 56.0
Ca_11409_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 3.0e-21 108.2 104 59.6
Zm00001eb204810 Zea mays HOM05D004041 ORTHO05D004564 3.0e-21 108.2 104 56.7
Haze_21676 Corylus avellana HOM05D063909 ORTHO05D004564 5.1e-21 107.5 126 57.1
Gohir.D06G179300 Gossypium hirsutum HOM05D004041 ORTHO05D004564 8.6e-21 106.7 150 44.7
Zm00001eb204750 Zea mays HOM05D004041 ORTHO05D004564 8.6e-21 106.7 101 57.4
Ca_11411_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 1.5e-20 105.9 104 58.7
Zm00001eb204820 Zea mays HOM05D004041 ORTHO05D004564 4.3e-20 104.4 105 54.3
Zm00001eb204830 Zea mays HOM05D004041 ORTHO05D004564 9.5e-20 103.2 104 54.8
Zm00001eb204770 Zea mays HOM05D004041 ORTHO05D004564 1.6e-19 102.4 107 55.1
Rhsim07G0241300 Rhododendron simsii HOM05D004041 ORTHO05D004564 1.1e-18 99.8 100 57.0
SalBow7G2142 Salvia bowleyana HOM05D004041 ORTHO05D004564 1.8e-18 99.0 102 52.0
Mapoly0018s0007 Marchantia polymorpha HOM05D004041 ORTHO05D004564 3.1e-18 98.2 162 42.0
MCO09G628 Micromonas commoda HOM05D004041 ORTHO05D004564 3.1e-18 98.2 158 43.7
Gorai.010G209300 Gossypium raimondii HOM05D004041 ORTHO05D004564 4.0e-18 97.8 151 44.4
RhsimUnG0236200 Rhododendron simsii HOM05D004041 ORTHO05D004564 2.0e-17 95.5 100 54.0
BolC3t18797H Brassica oleracea HOM05D004041 ORTHO05D004564 4.9e-16 90.9 114 50.9
PRCOL_00006922 Prasinoderma coloniale HOM05D004041 ORTHO05D004564 8.4e-16 90.1 112 47.3
Manes.07G111004 Manihot esculenta HOM05D004041 ORTHO05D004564 2.4e-15 88.6 105 42.9
Gorai.010G209900 Gossypium raimondii HOM05D004041 ORTHO05D004564 4.2e-15 87.8 138 43.5
Zm00001eb204760 Zea mays HOM05D004041 ORTHO05D004564 1.6e-14 85.9 108 50.0
TPR.G14045 Trifolium pratense HOM05D004041 ORTHO05D004564 6.0e-14 84.0 52 75.0
Cre09.g409200 Chlamydomonas reinhardtii HOM05D004041 ORTHO05D004564 2.5e-12 78.6 167 36.5
Dinv19111 Davidia involucrata HOM05D004041 ORTHO05D004564 2.5e-12 78.6 63 69.8
Zm00001eb357810 Zea mays HOM05D004041 ORTHO05D004564 1.6e-11 75.9 97 43.3
TPR.G10966 Trifolium pratense HOM05D004041 ORTHO05D004564 4.7e-11 74.3 50 74.0
Cfa024514 Carpinus fangiana HOM05D004041 ORTHO05D004564 8.1e-11 73.6 173 31.8
BcaC01g02423 Brassica carinata HOM05D004041 ORTHO05D004564 3.1e-10 71.6 84 53.6
Gorai.010G211700 Gossypium raimondii HOM05D004041 ORTHO05D004564 4.4e-09 67.8 151 35.1
CARHR261000 Cardamine hirsuta HOM05D004041 ORTHO05D004564 2.9e-08 65.1 68 54.4
SGA_v2.0_scaffold7G03771 Striga asiatica HOM05D004041 ORTHO05D004564 6.4e-08 63.9 67 49.3
MD15G1110900 Malus domestica HOM05D004041 ORTHO05D004564 1.6e-06 59.3 95 44.2


User provided reference genes

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