Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN20G2876 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 2319.3 1240 100.0
FAN24G1132 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 2216.0 1244 95.3
FvH4_2g11160 Fragaria vesca HOM05D004672 ORTHO05D005732 0.0e+00 2213.7 1258 94.6
FAN27G2619 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 2190.6 1240 95.2
FAN15G2368 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 2158.6 1224 93.5
RcHm_v2.0_Chr6g0269481 Rosa chinensis HOM05D004672 ORTHO05D005732 0.0e+00 2058.9 1264 88.3
MD10G1056900 Malus domestica HOM05D004672 ORTHO05D005732 0.0e+00 1820.1 1211 79.7
Prupe.8G075100 Prunus persica HOM05D004672 ORTHO05D005732 0.0e+00 1786.9 1205 79.9
MD05G1049800 Malus domestica HOM05D004672 ORTHO05D005732 0.0e+00 1776.5 1211 78.9
CiPaw.06G160900 Carya illinoinensis HOM05D004672 ORTHO05D005732 0.0e+00 1596.3 1240 68.9
Cfa004803 Carpinus fangiana HOM05D004672 ORTHO05D005732 0.0e+00 1586.6 1245 69.5
CSS0013617 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 0.0e+00 1571.2 1203 70.7
Manes.10G094200 Manihot esculenta HOM05D004672 ORTHO05D005732 0.0e+00 1567.7 1253 67.8
QL11p026607 Quercus lobata HOM05D004672 ORTHO05D005732 0.0e+00 1565.8 1320 66.1
Ciclev10027696m.g Citrus clementina HOM05D004672 ORTHO05D005732 0.0e+00 1562.7 1219 68.3
CSS0000676 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 0.0e+00 1560.4 1204 69.6
Duzib132G0551 Durio zibethinus HOM05D004672 ORTHO05D005732 0.0e+00 1553.5 1205 69.0
Actinidia02411 Actinidia chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1546.6 1205 69.1
Potri.009G079900 Populus trichocarpa HOM05D004672 ORTHO05D005732 0.0e+00 1543.1 1226 68.3
Haze_10395 Corylus avellana HOM05D004672 ORTHO05D005732 0.0e+00 1535.0 1269 67.1
CANSAT54G0310 Cannabis sativa HOM05D004672 ORTHO05D005732 0.0e+00 1534.2 1173 70.4
Thecc.02G125000 Theobroma cacao HOM05D004672 ORTHO05D005732 0.0e+00 1531.5 1215 67.7
Lj9C342T12 Lonicera japonica HOM05D004672 ORTHO05D005732 0.0e+00 1528.5 1206 68.2
Sed0014665 Sechium edule HOM05D004672 ORTHO05D005732 0.0e+00 1528.5 1204 67.1
Glyma.13G254600 Glycine max HOM05D004672 ORTHO05D005732 0.0e+00 1527.3 1210 67.0
Hma1.2p1_0908F.1_g235670 Hydrangea macrophylla HOM05D004672 ORTHO05D005732 0.0e+00 1523.8 1193 68.8
ClCG09G016480 Citrullus lanatus HOM05D004672 ORTHO05D005732 0.0e+00 1516.9 1214 67.5
TWI59G0488 Tripterygium wilfordii HOM05D004672 ORTHO05D005732 0.0e+00 1513.0 1197 66.7
arahy.Tifrunner.gnm1.ann1.BVLY6P Arachis hypogaea HOM05D004672 ORTHO05D005732 0.0e+00 1510.7 1197 67.3
vmacro19391 Vaccinium macrocarpon HOM05D004672 ORTHO05D005732 0.0e+00 1503.4 1227 66.8
Sed0001753 Sechium edule HOM05D004672 ORTHO05D005732 0.0e+00 1502.3 1203 65.9
Glyma.15G060100 Glycine max HOM05D004672 ORTHO05D005732 0.0e+00 1501.9 1210 66.3
Potri.001G285600 Populus trichocarpa HOM05D004672 ORTHO05D005732 0.0e+00 1500.7 1219 67.4
Lalb_Chr18g0060301 Lupinus albus HOM05D004672 ORTHO05D005732 0.0e+00 1499.2 1203 67.0
Gohir.D13G048000 Gossypium hirsutum HOM05D004672 ORTHO05D005732 0.0e+00 1497.3 1196 67.2
MSTRG.16633 Avicennia marina HOM05D004672 ORTHO05D005732 0.0e+00 1493.4 1213 66.4
Cc02_g20590 Coffea canephora HOM05D004672 ORTHO05D005732 0.0e+00 1491.9 1184 67.4
Gorai.013G053600 Gossypium raimondii HOM05D004672 ORTHO05D005732 0.0e+00 1487.6 1201 66.9
arahy.Tifrunner.gnm1.ann1.GE1IDC Arachis hypogaea HOM05D004672 ORTHO05D005732 0.0e+00 1487.2 1213 66.2
GSVIVG01038520001 Vitis vinifera HOM05D004672 ORTHO05D005732 0.0e+00 1485.7 1205 68.1
TAR628G0793 Trochodendron aralioides HOM05D004672 ORTHO05D005732 0.0e+00 1483.4 1203 65.9
Psat1g212840 Pisum sativum HOM05D004672 ORTHO05D005732 0.0e+00 1482.2 1207 65.8
Phvul.006G199700 Phaseolus vulgaris HOM05D004672 ORTHO05D005732 0.0e+00 1480.3 1200 65.8
Gohir.A13G049500 Gossypium hirsutum HOM05D004672 ORTHO05D005732 0.0e+00 1477.2 1210 66.7
CsaV3_7G007430 Cucumis sativus L. HOM05D004672 ORTHO05D005732 0.0e+00 1472.2 1188 66.5
Eucgr.I02582 Eucalyptus grandis HOM05D004672 ORTHO05D005732 0.0e+00 1470.3 1189 67.0
Sabra09G0061900 Salix brachista HOM05D004672 ORTHO05D005732 0.0e+00 1469.1 1224 65.7
Ca_00181_v3 Cicer arietinum L. HOM05D004672 ORTHO05D005732 0.0e+00 1466.8 1208 64.7
Sabra16G0178000 Salix brachista HOM05D004672 ORTHO05D005732 0.0e+00 1464.9 1263 64.4
VMungo0540G1852 Vigna mungo HOM05D004672 ORTHO05D005732 0.0e+00 1464.5 1203 64.6
MELO3C018559.2 Cucumis melo HOM05D004672 ORTHO05D005732 0.0e+00 1463.7 1187 66.6
Medtr2g010110 Medicago truncatula HOM05D004672 ORTHO05D005732 0.0e+00 1456.4 1206 64.5
Lj6g0005540 Lotus japonicus HOM05D004672 ORTHO05D005732 0.0e+00 1455.3 1265 63.9
Nn1g07286 Nelumbo nucifera HOM05D004672 ORTHO05D005732 0.0e+00 1438.3 1185 64.2
Hund06479 Selenicereus undatus HOM05D004672 ORTHO05D005732 0.0e+00 1437.9 1221 62.1
SalBow6G5524 Salvia bowleyana HOM05D004672 ORTHO05D005732 0.0e+00 1434.1 1170 65.6
EL10Ac9g22127 Beta vulgaris HOM05D004672 ORTHO05D005732 0.0e+00 1430.6 1207 62.8
Migut.B00522 Erythranthe guttata HOM05D004672 ORTHO05D005732 0.0e+00 1418.3 1184 64.7
DCAR_021895 Daucus carota HOM05D004672 ORTHO05D005732 0.0e+00 1412.5 1252 60.9
Lsat_1_v5_gn_9_113661 Lactuca sativa HOM05D004672 ORTHO05D005732 0.0e+00 1397.1 1203 63.4
Aqoxy6G00637 Aquilegia oxysepala HOM05D004672 ORTHO05D005732 0.0e+00 1394.8 1183 63.0
Lsat_1_v5_gn_9_113760 Lactuca sativa HOM05D004672 ORTHO05D005732 0.0e+00 1394.8 1200 63.4
CAN.G504.43 Capsicum annuum HOM05D004672 ORTHO05D005732 0.0e+00 1385.9 1208 62.5
Nitab4.5_0005163g0020 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1380.5 1183 63.1
AUR62027080 Chenopodium quinoa HOM05D004672 ORTHO05D005732 0.0e+00 1380.2 1213 60.6
HanXRQChr03g0071051 Helianthus annuus HOM05D004672 ORTHO05D005732 0.0e+00 1364.7 1213 61.2
AUR62030919 Chenopodium quinoa HOM05D004672 ORTHO05D005732 0.0e+00 1364.0 1213 60.2
ECA240G2418 Erigeron canadensis HOM05D004672 ORTHO05D005732 0.0e+00 1355.5 1179 62.4
SGA_v2.0_scaffold83G26394 Striga asiatica HOM05D004672 ORTHO05D005732 0.0e+00 1355.1 1199 61.1
Oeu033795.2 Olea europaea HOM05D004672 ORTHO05D005732 0.0e+00 1347.8 1224 61.2
PGR142G1680 Punica granatum HOM05D004672 ORTHO05D005732 0.0e+00 1347.4 1218 60.6
Nitab4.5_0002335g0010 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1345.9 1187 62.4
Sopen01g048630 Solanum pennellii HOM05D004672 ORTHO05D005732 0.0e+00 1340.9 1190 61.8
Oeu042393.4 Olea europaea HOM05D004672 ORTHO05D005732 0.0e+00 1339.3 1205 61.7
Carub.0008s2522 Capsella rubella HOM05D004672 ORTHO05D005732 0.0e+00 1337.8 1211 59.5
THA.LOC104799703 Tarenaya hassleriana HOM05D004672 ORTHO05D005732 0.0e+00 1332.8 1177 61.6
Aa31LG1G17480 Aethionema arabicum HOM05D004672 ORTHO05D005732 0.0e+00 1328.5 1226 59.8
Sp2g27510 Schrenkiella parvula HOM05D004672 ORTHO05D005732 0.0e+00 1328.2 1225 60.5
Solyc01g106220.4 Solanum lycopersicum HOM05D004672 ORTHO05D005732 0.0e+00 1328.2 1198 61.0
Thhalv10003522m.g Eutrema salsugineum HOM05D004672 ORTHO05D005732 0.0e+00 1322.0 1193 60.5
CARHR278390 Cardamine hirsuta HOM05D004672 ORTHO05D005732 0.0e+00 1318.9 1195 60.1
PGSC0003DMG400010676 Solanum tuberosum HOM05D004672 ORTHO05D005732 0.0e+00 1316.2 1176 62.2
MBI16_g10454_MAGBIO Magnolia biondii HOM05D004672 ORTHO05D005732 0.0e+00 1305.0 1222 59.2
AL8G41790 Arabidopsis lyrata HOM05D004672 ORTHO05D005732 0.0e+00 1298.5 1234 58.1
BraA06t26051Z Brassica rapa HOM05D004672 ORTHO05D005732 0.0e+00 1298.5 1227 59.2
C03p61860 Brassica napus HOM05D004672 ORTHO05D005732 0.0e+00 1296.2 1194 60.2
BolC3t18446H Brassica oleracea HOM05D004672 ORTHO05D005732 0.0e+00 1296.2 1194 60.2
AT5G64420 Arabidopsis thaliana HOM05D004672 ORTHO05D005732 0.0e+00 1294.3 1208 58.9
A06p31080 Brassica napus HOM05D004672 ORTHO05D005732 0.0e+00 1292.7 1194 59.9
TPR.G32637 Trifolium pratense HOM05D004672 ORTHO05D005732 0.0e+00 1282.3 1218 58.1
Sc06g0005830 Simmondsia chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1271.5 1079 63.0
PSO478G3191 Papaver somniferum HOM05D004672 ORTHO05D005732 0.0e+00 1255.4 1212 57.4
THA.LOC104818461 Tarenaya hassleriana HOM05D004672 ORTHO05D005732 0.0e+00 1251.9 1220 57.0
PSO017G1610 Papaver somniferum HOM05D004672 ORTHO05D005732 0.0e+00 1237.2 1168 58.2
Duzib132G1253 Durio zibethinus HOM05D004672 ORTHO05D005732 0.0e+00 1228.4 1185 59.2
Peaxi162Scf00016g03257 Petunia axillaris HOM05D004672 ORTHO05D005732 0.0e+00 1171.4 1184 55.1
unitig_744.g24197 Utricularia gibba HOM05D004672 ORTHO05D005732 0.0e+00 1151.3 1172 55.0
Peaxi162Scf00016g03462 Petunia axillaris HOM05D004672 ORTHO05D005732 0.0e+00 1131.7 1176 54.8
Nitab4.5_0005163g0030 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1130.9 1188 54.3
SHI04921 Sapria himalayana HOM05D004672 ORTHO05D005732 0.0e+00 1117.8 1196 52.5
Actinidia00323 Actinidia chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1114.4 946 65.2
HPP92_024099 Vanilla planifolia HOM05D004672 ORTHO05D005732 0.0e+00 1104.0 1246 50.2
CDE05G2025 Ceratophyllum demersum HOM05D004672 ORTHO05D005732 0.0e+00 1089.3 1189 50.9
Ah.01g024170 Amaranthus hybridus HOM05D004672 ORTHO05D005732 0.0e+00 1075.8 1040 57.5
ATR0800G038 Amborella trichopoda HOM05D004672 ORTHO05D005732 3.8e-302 1042.0 1211 50.5
Os02g0135700 Oryza sativa ssp. japonica HOM05D004672 ORTHO05D005732 1.9e-290 1003.0 1241 46.8
Dinv08968 Davidia involucrata HOM05D004672 ORTHO05D005732 4.0e-288 995.3 710 72.3
Zm00001eb231630 Zea mays HOM05D004672 ORTHO05D005732 3.0e-283 979.2 1227 46.6
Atru.chr6.1353 Acer truncatum HOM05D004672 ORTHO05D005732 5.0e-254 882.1 622 73.0
Cpa.g.sc20.40 Carica papaya HOM05D004672 ORTHO05D005732 2.4e-248 863.2 1206 45.9
SEGI_31749 Sequoiadendron giganteum HOM05D004672 ORTHO05D005732 2.4e-216 756.9 1107 42.6
Atru.chr6.1354 Acer truncatum HOM05D004672 ORTHO05D005732 4.2e-176 623.2 538 66.4
Dinv16031 Davidia involucrata HOM05D004672 ORTHO05D005732 1.2e-175 621.7 429 72.7
vmacro06228 Vaccinium macrocarpon HOM05D004672 ORTHO05D005732 6.7e-158 562.8 867 45.3
Dinv16032 Davidia involucrata HOM05D004672 ORTHO05D005732 3.8e-153 547.0 539 59.6
Dinv08967 Davidia involucrata HOM05D004672 ORTHO05D005732 5.0e-153 546.6 452 65.5
BcaB07g29742 Brassica carinata HOM05D004672 ORTHO05D005732 3.2e-144 517.3 670 50.1
AagrBONN_evm.TU.Sc2ySwM_228.3115__3116 Anthoceros agrestis HOM05D004672 ORTHO05D005732 1.5e-141 508.4 1207 32.4
AagrBONN_evm.TU.Sc2ySwM_368.3324__3325 Anthoceros agrestis HOM05D004672 ORTHO05D005732 5.7e-141 506.5 1194 31.9
BcaC03g18261 Brassica carinata HOM05D004672 ORTHO05D005732 1.3e-140 505.4 609 47.8
Pp3c13_11570 Physcomitrium patens HOM05D004672 ORTHO05D005732 2.0e-138 498.0 1228 32.9
Pp3c3_9940 Physcomitrium patens HOM05D004672 ORTHO05D005732 6.5e-137 493.0 1237 33.1
SMO358G0564 Selaginella moellendorffii HOM05D004672 ORTHO05D005732 3.1e-123 447.6 1132 31.6
Mapoly0136s0021 Marchantia polymorpha HOM05D004672 ORTHO05D005732 1.6e-122 445.3 1209 31.8
C02p63340 Brassica napus HOM05D004672 ORTHO05D005732 2.8e-95 354.8 1044 30.9
CBR_g52045 Chara braunii HOM05D004672 ORTHO05D005732 1.3e-89 335.9 1291 26.3
BolC2t12404H Brassica oleracea HOM05D004672 ORTHO05D005732 2.0e-85 322.0 1040 29.2
AL8G35270 Arabidopsis lyrata HOM05D004672 ORTHO05D005732 1.7e-76 292.4 247 62.3
BcaC03g18262 Brassica carinata HOM05D004672 ORTHO05D005732 3.8e-76 291.2 330 50.6
Gorai.005G227500 Gossypium raimondii HOM05D004672 ORTHO05D005732 7.9e-74 283.5 478 37.9
Gohir.D02G202550 Gossypium hirsutum HOM05D004672 ORTHO05D005732 3.9e-73 281.2 478 37.9
Nitab4.5_0001405g0010 Nicotiana tabacum HOM05D004672 ORTHO05D005732 9.0e-46 190.3 217 51.6
RcHm_v2.0_Chr1g0357401 Rosa chinensis HOM05D004672 ORTHO05D346782 3.8e-36 158.3 186 49.5
MCO10G087 Micromonas commoda HOM05D004672 ORTHO05D005732 2.5e-35 155.6 1242 23.2
Manes.10G093300 Manihot esculenta HOM05D004672 ORTHO05D005732 1.7e-31 142.9 147 56.5
Nitab4.5_0003026g0050 Nicotiana tabacum HOM05D004672 ORTHO05D005732 7.0e-30 137.5 347 30.5
Nitab4.5_0001405g0020 Nicotiana tabacum HOM05D004672 ORTHO05D005732 1.7e-28 132.9 129 54.3
Psat5g050320 Pisum sativum HOM05D004672 ORTHO05D005732 2.9e-28 132.1 92 70.7
C02p63360 Brassica napus HOM05D004672 ORTHO05D005732 4.2e-27 128.3 159 48.4
Cre01.g012350 Chlamydomonas reinhardtii HOM05D004672 ORTHO05D005732 1.0e-25 123.6 1245 22.3
Nitab4.5_0001405g0040 Nicotiana tabacum HOM05D004672 ORTHO05D005732 1.0e-17 97.1 122 45.1
Medtr2g086320 Medicago truncatula HOM05D004672 ORTHO05D005732 2.0e-16 92.8 112 54.5
C02p63350 Brassica napus HOM05D004672 ORTHO05D005732 3.4e-16 92.0 73 56.2
BraA02t09256Z Brassica rapa HOM05D004672 ORTHO05D005732 3.7e-15 88.6 72 55.6
Lsat_1_v5_gn_8_42860 Lactuca sativa HOM05D004672 ORTHO05D005732 4.1e-14 85.1 69 63.8
Nn8g41203 Nelumbo nucifera HOM05D004672 ORTHO05D005732 7.0e-14 84.3 71 57.7
Nn2g13574 Nelumbo nucifera HOM05D004672 ORTHO05D005732 1.6e-13 83.2 61 70.5
Psat0s7528g0040 Pisum sativum HOM05D003881 ORTHO05D004343 5.9e-13 81.3 53 73.6
Psat1g034120 Pisum sativum HOM05D003881 ORTHO05D004343 5.9e-13 81.3 53 73.6
Solyc01g106270.1 Solanum lycopersicum HOM05D004672 ORTHO05D005732 1.0e-12 80.5 190 32.6
Zm00001eb156660 Zea mays HOM05D004672 ORTHO05D005732 8.5e-12 77.4 95 37.9
VMungo0540G1591 Vigna mungo HOM05D003578 ORTHO05D004021 4.7e-10 71.6 60 58.3
Ah.01g011940 Amaranthus hybridus HOM05D004672 ORTHO05D005732 4.9e-07 61.6 41 65.9
SGA_v2.0_scaffold32G12947 Striga asiatica HOM05D004672 ORTHO05D005732 6.3e-07 61.2 76 43.4
arahy.Tifrunner.gnm1.ann1.F8N9WK Arachis hypogaea HOM05D000158 ORTHO05D000197 8.3e-07 60.8 91 44.0
RcHm_v2.0_Chr6g0274801 Rosa chinensis HOM05D004235 ORTHO05D026109 8.3e-07 60.8 52 63.5
SalBow1G8382 Salvia bowleyana HOM05D004672 ORTHO05D005732 7.0e-06 57.8 41 70.7


User provided reference genes

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