Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN20G2844 Fragaria x ananassa HOM05D000556 ORTHO05D000404 3.2e-53 211.5 104 100.0
RcHm_v2.0_Chr6g0273491 Rosa chinensis HOM05D000556 ORTHO05D000404 2.4e-24 115.5 100 64.0
TAR624G0898 Trochodendron aralioides HOM05D000556 ORTHO05D000404 3.2e-21 105.1 103 57.3
Eucgr.F02637 Eucalyptus grandis HOM05D000556 ORTHO05D000404 1.2e-20 103.2 109 52.3
Prupe.8G050700 Prunus persica HOM05D000556 ORTHO05D000404 1.6e-20 102.8 100 57.0
Potri.013G116300 Populus trichocarpa HOM05D000556 ORTHO05D000404 3.5e-20 101.7 100 55.0
MD10G1044200 Malus domestica HOM05D000556 ORTHO05D000404 6.1e-20 100.9 109 54.1
QL02p034781 Quercus lobata HOM05D000556 ORTHO05D000404 6.1e-20 100.9 103 52.4
Atru.chr13.1871 Acer truncatum HOM05D000556 ORTHO05D000404 7.9e-20 100.5 100 55.0
RcHm_v2.0_Chr6g0272721 Rosa chinensis HOM05D000556 ORTHO05D000404 7.9e-20 100.5 101 58.4
Haze_17878 Corylus avellana HOM05D000556 ORTHO05D000404 1.0e-19 100.1 103 54.4
Cfa018224 Carpinus fangiana HOM05D000556 ORTHO05D000404 2.3e-19 99.0 103 53.4
FAN24G1528 Fragaria x ananassa HOM05D000556 ORTHO05D000404 2.3e-19 99.0 52 88.5
Sabra13G0098500 Salix brachista HOM05D000556 ORTHO05D000404 2.3e-19 99.0 100 54.0
Manes.02G188500 Manihot esculenta HOM05D000556 ORTHO05D000404 6.7e-19 97.4 103 52.4
CiPaw.16G005600 Carya illinoinensis HOM05D000556 ORTHO05D000404 2.5e-18 95.5 103 53.4
Duzib116G0884 Durio zibethinus HOM05D000556 ORTHO05D000404 2.5e-18 95.5 100 51.0
Nn5g27891 Nelumbo nucifera HOM05D000556 ORTHO05D000404 2.5e-18 95.5 100 51.0
GSVIVG01036851001 Vitis vinifera HOM05D000556 ORTHO05D000404 4.3e-18 94.7 100 51.0
Thecc.08G199000 Theobroma cacao HOM05D000556 ORTHO05D000404 9.7e-18 93.6 100 49.0
arahy.Tifrunner.gnm1.ann1.P9DCQH Arachis hypogaea HOM05D000903 ORTHO05D000731 1.6e-17 92.8 103 50.5
arahy.Tifrunner.gnm1.ann1.TQNH9K Arachis hypogaea HOM05D000556 ORTHO05D000404 1.6e-17 92.8 103 50.5
Oeu030019.1 Olea europaea HOM05D000556 ORTHO05D000404 1.6e-17 92.8 82 57.3
Dinv27400 Davidia involucrata HOM05D000556 ORTHO05D000404 2.8e-17 92.0 103 50.5
Solyc10g050200.1 Solanum lycopersicum HOM05D000556 ORTHO05D000404 4.8e-17 91.3 100 47.0
Sopen10g021350 Solanum pennellii HOM05D000556 ORTHO05D000404 4.8e-17 91.3 100 47.0
Cc00_g04240 Coffea canephora HOM05D000556 ORTHO05D000404 6.3e-17 90.9 100 49.0
Gorai.005G076000 Gossypium raimondii HOM05D000556 ORTHO05D000404 6.3e-17 90.9 100 49.0
Ciclev10003661m.g Citrus clementina HOM05D000556 ORTHO05D000404 1.1e-16 90.1 98 51.0
Gohir.D02G067100 Gossypium hirsutum HOM05D000556 ORTHO05D000404 1.1e-16 90.1 100 49.0
Lj2g0008213 Lotus japonicus HOM05D000556 ORTHO05D000404 1.1e-16 90.1 83 51.8
Gohir.A02G061500 Gossypium hirsutum HOM05D000556 ORTHO05D000404 1.4e-16 89.7 100 49.0
Rhsim06G0110500 Rhododendron simsii HOM05D000556 ORTHO05D000404 1.4e-16 89.7 103 47.6
vmacro12518 Vaccinium macrocarpon HOM05D000556 ORTHO05D000404 2.4e-16 89.0 103 46.6
TWI34G1880 Tripterygium wilfordii HOM05D000556 ORTHO05D000404 5.3e-16 87.8 100 49.0
Dinv09569 Davidia involucrata HOM05D000556 ORTHO05D000404 6.9e-16 87.4 102 50.0
Lj7P305T40 Lonicera japonica HOM05D000556 ORTHO05D000404 6.9e-16 87.4 100 48.0
PGSC0003DMG400006225 Solanum tuberosum HOM05D000556 ORTHO05D000404 1.5e-15 86.3 100 46.0
TPR.G30583 Trifolium pratense HOM05D000556 ORTHO05D000404 1.5e-15 86.3 81 54.3
Glyma.16G157800 Glycine max HOM05D000556 ORTHO05D000404 2.0e-15 85.9 104 45.2
Migut.C01204 Erythranthe guttata HOM05D000556 ORTHO05D000404 2.6e-15 85.5 101 48.5
VMungo0464G1270 Vigna mungo HOM05D000556 ORTHO05D000404 3.4e-15 85.1 104 44.2
Glyma.02G075800 Glycine max HOM05D000556 ORTHO05D000404 7.7e-15 84.0 104 47.1
EL10Ac1g00053 Beta vulgaris HOM05D000556 ORTHO05D000404 1.0e-14 83.6 102 45.1
CANSAT25G2849 Cannabis sativa HOM05D000556 ORTHO05D000404 1.7e-14 82.8 100 47.0
Psat6g188440 Pisum sativum HOM05D000556 ORTHO05D000404 1.7e-14 82.8 81 51.9
MBI17_g15292_MAGBIO Magnolia biondii HOM05D000556 ORTHO05D000404 2.9e-14 82.0 100 45.0
Peaxi162Scf00003g00239 Petunia axillaris HOM05D000556 ORTHO05D000404 2.9e-14 82.0 100 44.0
Phvul.004G086000 Phaseolus vulgaris HOM05D000556 ORTHO05D000404 3.8e-14 81.6 104 45.2
SalBow7G1485 Salvia bowleyana HOM05D000556 ORTHO05D000404 1.9e-13 79.3 100 44.0
Ca_10633_v3 Cicer arietinum L. HOM05D000556 ORTHO05D000404 3.2e-13 78.6 102 44.1
DCAR_031385 Daucus carota HOM05D000556 ORTHO05D000404 5.5e-13 77.8 106 40.6
Sc23g0001040 Simmondsia chinensis HOM05D000556 ORTHO05D000404 5.5e-13 77.8 99 43.4
AUR62023596 Chenopodium quinoa HOM05D000556 ORTHO05D000404 1.6e-12 76.3 102 42.2
Cpa.g.sc66.114 Carica papaya HOM05D000556 ORTHO05D000404 3.6e-12 75.1 109 41.3
Hma1.2p1_0138F.1_g062870 Hydrangea macrophylla HOM05D000556 ORTHO05D000404 6.1e-12 74.3 100 42.0
AUR62004678 Chenopodium quinoa HOM05D000556 ORTHO05D000404 1.0e-11 73.6 102 42.2
RcHm_v2.0_Chr6g0272661 Rosa chinensis HOM05D000556 ORTHO05D000404 6.7e-11 70.9 83 54.2
SGA_v2.0_scaffold118G32449 Striga asiatica HOM05D000556 ORTHO05D000404 4.8e-09 64.7 109 36.7
RcHm_v2.0_Chr6g0272601 Rosa chinensis HOM05D000556 ORTHO05D000404 8.2e-09 63.9 47 63.8
CSS0024567 Camellia sinensis var. sinensis HOM05D000556 ORTHO05D000404 1.1e-08 63.5 102 38.2
Zm00001eb366150 Zea mays HOM05D000556 ORTHO05D000404 2.4e-08 62.4 105 39.0
Os01g0882400 Oryza sativa ssp. japonica HOM05D000556 ORTHO05D000404 5.9e-07 57.8 109 35.8


User provided reference genes

Program Settings