Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN20G2816 Fragaria x ananassa HOM05D004288 ORTHO05D004997 3.0e-57 224.9 114 100.0
FAN27G1232 Fragaria x ananassa HOM05D004288 ORTHO05D004997 9.8e-56 219.9 114 97.4
FAN15G0972 Fragaria x ananassa HOM05D004288 ORTHO05D004997 3.7e-55 218.0 114 97.4
FvH4_2g33280 Fragaria vesca HOM05D004288 ORTHO05D004997 4.9e-55 217.6 114 96.5
FAN24G2538 Fragaria x ananassa HOM05D004288 ORTHO05D004997 4.9e-55 217.6 114 96.5
RcHm_v2.0_Chr6g0309361 Rosa chinensis HOM05D004288 ORTHO05D004997 8.6e-44 180.3 118 81.4
MD15G1071700 Malus domestica HOM05D004288 ORTHO05D004997 1.1e-25 120.2 117 59.8
Prupe.1G424700 Prunus persica HOM05D004288 ORTHO05D004997 1.4e-22 109.8 122 54.9
MD08G1087000 Malus domestica HOM05D004288 ORTHO05D004997 5.4e-22 107.8 122 56.6
Cfa013675 Carpinus fangiana HOM05D004288 ORTHO05D004997 4.3e-19 98.2 115 52.2
GSVIVG01009362001 Vitis vinifera HOM05D004288 ORTHO05D004997 7.3e-19 97.4 120 52.5
CiPaw.07G176600 Carya illinoinensis HOM05D004288 ORTHO05D004997 1.6e-18 96.3 113 53.1
Haze_22316 Corylus avellana HOM05D004288 ORTHO05D004997 3.6e-18 95.1 114 52.6
Dinv44970 Davidia involucrata HOM05D004288 ORTHO05D004997 8.1e-18 94.0 111 51.4
Ciclev10002881m.g Citrus clementina HOM05D004288 ORTHO05D004997 1.8e-17 92.8 115 51.3
Atru.chr13.813 Acer truncatum HOM05D004288 ORTHO05D004997 9.0e-17 90.5 117 50.4
TWI12G0116 Tripterygium wilfordii HOM05D004288 ORTHO05D004997 9.9e-16 87.0 111 51.4
Duzib116G0008 Durio zibethinus HOM05D004288 ORTHO05D004997 1.7e-15 86.3 107 48.6
QL12p037641 Quercus lobata HOM05D004288 ORTHO05D004997 1.7e-15 86.3 139 42.4
Cc10_g05620 Coffea canephora HOM05D004288 ORTHO05D004997 3.8e-15 85.1 109 45.9
Gohir.A05G208400 Gossypium hirsutum HOM05D004288 ORTHO05D004997 3.8e-15 85.1 106 49.1
Potri.014G017600 Populus trichocarpa HOM05D004288 ORTHO05D004997 6.4e-15 84.3 116 47.4
Rhsim06G0060800 Rhododendron simsii HOM05D004288 ORTHO05D004997 6.4e-15 84.3 105 45.7
TWI56G0562 Tripterygium wilfordii HOM05D004288 ORTHO05D004997 8.4e-15 84.0 111 46.8
Duzib041G0778 Durio zibethinus HOM05D004288 ORTHO05D004997 1.1e-14 83.6 109 50.5
Thecc.08G091000 Theobroma cacao HOM05D004288 ORTHO05D004997 1.1e-14 83.6 109 48.6
Gohir.D05G211900 Gossypium hirsutum HOM05D004288 ORTHO05D004997 4.2e-14 81.6 106 49.1
Gorai.009G218500 Gossypium raimondii HOM05D004288 ORTHO05D004997 4.2e-14 81.6 106 49.1
CSS0041913 Camellia sinensis var. sinensis HOM05D004288 ORTHO05D004997 5.4e-14 81.3 106 44.3
Actinidia10187 Actinidia chinensis HOM05D004288 ORTHO05D004997 7.1e-14 80.9 78 53.8
Phvul.001G026400 Phaseolus vulgaris HOM05D004288 ORTHO05D004997 1.2e-13 80.1 114 44.7
Manes.18G045000 Manihot esculenta HOM05D004288 ORTHO05D004997 1.6e-13 79.7 112 45.5
vmacro21447 Vaccinium macrocarpon HOM05D004288 ORTHO05D004997 1.6e-13 79.7 105 46.7
Dinv39247 Davidia involucrata HOM05D004288 ORTHO05D004997 2.1e-13 79.3 109 45.9
Glyma.17G236500 Glycine max HOM05D004288 ORTHO05D004997 2.7e-13 79.0 125 47.2
Gorai.010G024900 Gossypium raimondii HOM05D004288 ORTHO05D004997 2.7e-13 79.0 112 50.0
Phvul.001G026500 Phaseolus vulgaris HOM05D004288 ORTHO05D004997 2.7e-13 79.0 122 45.1
TAR628G0045 Trochodendron aralioides HOM05D004288 ORTHO05D004997 7.9e-13 77.4 118 44.9
Actinidia22683 Actinidia chinensis HOM05D004288 ORTHO05D004997 1.0e-12 77.0 106 45.3
THA.LOC104801605 Tarenaya hassleriana HOM05D004288 ORTHO05D004997 1.3e-12 76.6 98 42.9
CiPaw.13G085100 Carya illinoinensis HOM05D004288 ORTHO05D004997 1.8e-12 76.3 76 56.6
Gohir.D06G020400 Gossypium hirsutum HOM05D004288 ORTHO05D004997 3.0e-12 75.5 112 48.2
CANSAT25G2350 Cannabis sativa HOM05D004288 ORTHO05D004997 3.9e-12 75.1 113 43.4
Glyma.14G087800 Glycine max HOM05D004288 ORTHO05D004997 3.9e-12 75.1 125 46.4
Actinidia38098 Actinidia chinensis HOM05D004288 ORTHO05D004997 5.1e-12 74.7 119 42.0
CiPaw.08G049000 Carya illinoinensis HOM05D004288 ORTHO05D004997 5.1e-12 74.7 116 46.6
THA.LOC104825767 Tarenaya hassleriana HOM05D004288 ORTHO05D004997 5.1e-12 74.7 102 44.1
TAR376G0993 Trochodendron aralioides HOM05D004288 ORTHO05D004997 6.7e-12 74.3 119 42.9
CiPaw.08G113500 Carya illinoinensis HOM05D004288 ORTHO05D004997 8.7e-12 73.9 73 56.2
Gohir.A06G023200 Gossypium hirsutum HOM05D004288 ORTHO05D004997 8.7e-12 73.9 112 47.3
Cpa.g.sc21.102 Carica papaya HOM05D004288 ORTHO05D004997 1.1e-11 73.6 116 40.5
Peaxi162Scf00081g01322 Petunia axillaris HOM05D004288 ORTHO05D004997 1.1e-11 73.6 44 70.5
EL10As7g23804 Beta vulgaris HOM05D004288 ORTHO05D004997 1.5e-11 73.2 118 44.1
PSO541G1266 Papaver somniferum HOM05D004288 ORTHO05D004997 1.9e-11 72.8 120 40.0
Migut.C00495 Erythranthe guttata HOM05D004288 ORTHO05D004997 2.5e-11 72.4 114 43.0
PSO675G1665 Papaver somniferum HOM05D004288 ORTHO05D004997 2.5e-11 72.4 112 41.1
SalBow6G1935 Salvia bowleyana HOM05D004288 ORTHO05D004997 2.5e-11 72.4 89 41.6
SalBow8G0960 Salvia bowleyana HOM05D004288 ORTHO05D004997 2.5e-11 72.4 89 41.6
CSS0005181 Camellia sinensis var. sinensis HOM05D004288 ORTHO05D004997 3.3e-11 72.0 118 41.5
COL.COLO4_28524 Corchorus olitorius HOM05D004288 ORTHO05D004997 3.3e-11 72.0 81 56.8
MSTRG.22227 Avicennia marina HOM05D004288 ORTHO05D004997 4.3e-11 71.6 106 44.3
Hund14391 Selenicereus undatus HOM05D004288 ORTHO05D004997 7.4e-11 70.9 56 64.3
Hma1.2p1_0210F.1_g089620 Hydrangea macrophylla HOM05D004288 ORTHO05D004997 1.3e-10 70.1 82 53.7
SalBow7G4748 Salvia bowleyana HOM05D004288 ORTHO05D004997 1.6e-10 69.7 50 64.0
Hma1.2p1_0819F.1_g223820 Hydrangea macrophylla HOM05D004288 ORTHO05D004997 2.1e-10 69.3 99 45.5
Nitab4.5_0000569g0070 Nicotiana tabacum HOM05D004288 ORTHO05D004997 2.8e-10 68.9 101 44.6
DCAR_012811 Daucus carota HOM05D004288 ORTHO05D004997 3.6e-10 68.6 58 56.9
Peaxi162Scf00160g00120 Petunia axillaris HOM05D004288 ORTHO05D004997 3.6e-10 68.6 71 54.9
TAR636G2516 Trochodendron aralioides HOM05D004288 ORTHO05D004997 3.6e-10 68.6 87 46.0
Oeu057368.1 Olea europaea HOM05D004288 ORTHO05D004997 4.8e-10 68.2 118 39.8
Sc02g0007800 Simmondsia chinensis HOM05D003189 ORTHO05D003449 4.8e-10 68.2 95 48.4
PGSC0003DMG400021529 Solanum tuberosum HOM05D004288 ORTHO05D004997 4.8e-10 68.2 112 43.8
Os03g0206201 Oryza sativa ssp. japonica HOM05D004288 ORTHO05D004997 8.1e-10 67.4 66 47.0
Eucgr.F00116 Eucalyptus grandis HOM05D004288 ORTHO05D004997 1.1e-09 67.0 117 41.0
SGA_v2.0_scaffold14G06935 Striga asiatica HOM05D004288 ORTHO05D004997 1.1e-09 67.0 73 47.9
Ah.05g167180 Amaranthus hybridus HOM05D004288 ORTHO05D004997 1.4e-09 66.6 122 42.6
MBI16_g22811_MAGBIO Magnolia biondii HOM05D004288 ORTHO05D004997 1.4e-09 66.6 114 40.4
Sed0012219 Sechium edule HOM05D004288 ORTHO05D004997 1.4e-09 66.6 52 59.6
Solyc04g078010.4 Solanum lycopersicum HOM05D004288 ORTHO05D004997 1.4e-09 66.6 53 60.4
Sopen04g031610 Solanum pennellii HOM05D004288 ORTHO05D004997 1.4e-09 66.6 53 60.4
Sopen12g030390 Solanum pennellii HOM05D004288 ORTHO05D004997 1.8e-09 66.2 66 53.0
Rhsim07G0221200 Rhododendron simsii HOM05D004288 ORTHO05D004997 2.4e-09 65.9 47 61.7
Solyc12g088410.3 Solanum lycopersicum HOM05D004288 ORTHO05D004997 2.4e-09 65.9 66 53.0
HanXRQChr01g0027971 Helianthus annuus HOM05D004288 ORTHO05D004997 3.1e-09 65.5 100 46.0
PGSC0003DMG401011559 Solanum tuberosum HOM05D004288 ORTHO05D004997 3.1e-09 65.5 66 51.5
Sed0026714 Sechium edule HOM05D004288 ORTHO05D004997 4.0e-09 65.1 116 38.8
TPR.G11815 Trifolium pratense HOM05D004288 ORTHO05D004997 4.0e-09 65.1 116 37.9
ECA232G2356 Erigeron canadensis HOM05D004288 ORTHO05D004997 5.3e-09 64.7 118 42.4
Nn1g04602 Nelumbo nucifera HOM05D004288 ORTHO05D004997 5.3e-09 64.7 120 40.0
Nitab4.5_0014410g0020 Nicotiana tabacum HOM05D004288 ORTHO05D004997 5.3e-09 64.7 106 39.6
Zm00001eb007460 Zea mays HOM05D004288 ORTHO05D004997 5.3e-09 64.7 47 63.8
CAN.G107.3 Capsicum annuum HOM05D004288 ORTHO05D004997 6.9e-09 64.3 48 62.5
GSVIVG01037855001 Vitis vinifera HOM05D004288 ORTHO05D004997 6.9e-09 64.3 112 38.4
CDE04G1463 Ceratophyllum demersum HOM05D004288 ORTHO05D004997 9.0e-09 63.9 57 56.1
Lsat_1_v5_gn_4_130821 Lactuca sativa HOM05D004288 ORTHO05D004997 9.0e-09 63.9 112 42.0
CiPaw.04G152800 Carya illinoinensis HOM05D004288 ORTHO05D004997 1.2e-08 63.5 71 53.5
MELO3C032376.2 Cucumis melo HOM05D004288 ORTHO05D004997 1.2e-08 63.5 52 57.7
CsaV3_4G034910 Cucumis sativus L. HOM05D004288 ORTHO05D003449 1.2e-08 63.5 89 42.7
Sed0005367 Sechium edule HOM05D004288 ORTHO05D004997 1.2e-08 63.5 115 39.1
PGR031G3267 Punica granatum HOM05D004288 ORTHO05D004997 1.5e-08 63.2 104 43.3
Sabra14G0011500 Salix brachista HOM05D004288 ORTHO05D004997 1.5e-08 63.2 78 50.0
VMungo0647G1919 Vigna mungo HOM05D004288 ORTHO05D004997 1.5e-08 63.2 122 40.2
CDE06G1799 Ceratophyllum demersum HOM05D004288 ORTHO05D004997 2.0e-08 62.8 53 58.5
Medtr1g018470 Medicago truncatula HOM05D004288 ORTHO05D004997 2.0e-08 62.8 111 40.5
Medtr1g418505 Medicago truncatula HOM05D004288 ORTHO05D004997 2.0e-08 62.8 111 40.5
Nitab4.5_0011511g0010 Nicotiana tabacum HOM05D004288 ORTHO05D004997 2.0e-08 62.8 50 62.0
HanXRQChr09g0266571 Helianthus annuus HOM05D004288 ORTHO05D004997 2.6e-08 62.4 111 42.3
Nitab4.5_0000934g0110 Nicotiana tabacum HOM05D004288 ORTHO05D004997 2.6e-08 62.4 78 47.4
Aqoxy6G02704 Aquilegia oxysepala HOM05D004288 ORTHO05D004997 5.8e-08 61.2 58 55.2
CANSAT54G1812 Cannabis sativa HOM05D004288 ORTHO05D004997 5.8e-08 61.2 37 70.3
ClCG05G020460 Citrullus lanatus HOM05D004288 ORTHO05D004997 5.8e-08 61.2 92 43.5
TAR381G1169 Trochodendron aralioides HOM05D004288 ORTHO05D004997 5.8e-08 61.2 80 46.2
AUR62024064 Chenopodium quinoa HOM05D004288 ORTHO05D004997 7.6e-08 60.8 62 54.8
Thhalv10015166m.g Eutrema salsugineum HOM05D004288 ORTHO05D004997 9.9e-08 60.5 49 63.3
ClCG05G020480 Citrullus lanatus HOM05D004288 ORTHO05D004997 1.3e-07 60.1 47 59.6
AUR62041737 Chenopodium quinoa HOM05D004288 ORTHO05D004997 2.2e-07 59.3 98 45.9
MELO3C016806.2 Cucumis melo HOM05D004288 ORTHO05D004997 2.2e-07 59.3 116 37.1
DCAR_008852 Daucus carota HOM05D004288 ORTHO05D004997 2.2e-07 59.3 83 43.4
AT5G01075 Arabidopsis thaliana HOM05D004288 ORTHO05D004997 2.9e-07 58.9 52 61.5
MSTRG.1030 Avicennia marina HOM05D004288 ORTHO05D004997 2.9e-07 58.9 51 58.8
AUR62029595 Chenopodium quinoa HOM05D004288 ORTHO05D004997 2.9e-07 58.9 65 52.3
Carub.0006s0080 Capsella rubella HOM05D004288 ORTHO05D004997 3.8e-07 58.5 48 64.6
Migut.N02769 Erythranthe guttata HOM05D004288 ORTHO05D004997 3.8e-07 58.5 48 54.2
HanXRQChr11g0341661 Helianthus annuus HOM05D004288 ORTHO05D004997 3.8e-07 58.5 106 41.5
SGA_v2.0_scaffold238G43969 Striga asiatica HOM05D004288 ORTHO05D004997 6.4e-07 57.8 39 66.7
Psat6g015560 Pisum sativum HOM05D004288 ORTHO05D004997 1.4e-06 56.6 115 38.3
Lsat_1_v5_gn_6_112441 Lactuca sativa HOM05D004288 ORTHO05D004997 2.4e-06 55.8 45 60.0
Sp6g40470 Schrenkiella parvula HOM05D004288 ORTHO05D004997 2.4e-06 55.8 38 68.4
Lj3g0011225 Lotus japonicus HOM05D004288 ORTHO05D004997 3.2e-06 55.5 117 40.2
TPR.G3776 Trifolium pratense HOM05D004288 ORTHO05D004997 3.2e-06 55.5 80 41.2
unitig_8.g4880 Utricularia gibba HOM05D004288 ORTHO05D004997 5.5e-06 54.7 118 37.3
AL6G11150 Arabidopsis lyrata HOM05D004288 ORTHO05D004997 7.1e-06 54.3 38 63.2
BraA02t04704Z Brassica rapa HOM05D004288 ORTHO05D004997 7.1e-06 54.3 46 60.9
ECA246G3669 Erigeron canadensis HOM05D002841 ORTHO05D003158 7.1e-06 54.3 40 55.0
BcaC03g13064 Brassica carinata HOM05D004288 ORTHO05D004997 9.3e-06 53.9 46 58.7
C02p00310 Brassica napus HOM05D004288 ORTHO05D004997 9.3e-06 53.9 46 58.7
Ciclev10029597m.g Citrus clementina HOM05D004288 ORTHO05D004997 9.3e-06 53.9 125 36.0


User provided reference genes

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