Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN20G2771 Fragaria x ananassa HOM05D005386 ORTHO05D006981 2.4e-176 622.1 319 100.0
FvH4_2g14080 Fragaria vesca HOM05D005386 ORTHO05D006981 6.6e-150 534.3 319 88.4
RcHm_v2.0_Chr5g0045261 Rosa chinensis HOM05D005386 ORTHO05D006981 4.4e-130 468.4 325 79.1
Prupe.6G135900 Prunus persica HOM05D005386 ORTHO05D006981 1.8e-107 393.3 315 69.2
MD03G1149900 Malus domestica HOM05D005386 ORTHO05D006981 7.6e-106 387.9 323 66.6
QL01p011847 Quercus lobata HOM05D005386 ORTHO05D006981 1.1e-96 357.5 318 61.3
Cfa009987 Carpinus fangiana HOM05D005386 ORTHO05D006981 1.6e-95 353.6 315 61.6
Haze_23346 Corylus avellana HOM05D005386 ORTHO05D006981 5.1e-94 348.6 316 60.1
CiPaw.14G098000 Carya illinoinensis HOM05D005386 ORTHO05D006981 1.3e-92 344.0 315 60.0
COL.COLO4_34005 Corchorus olitorius HOM05D005386 ORTHO05D006981 2.8e-92 342.8 317 57.4
GSVIVG01036080001 Vitis vinifera HOM05D005386 ORTHO05D006981 1.1e-91 340.9 312 60.3
CANSAT54G1533 Cannabis sativa HOM05D005386 ORTHO05D006981 1.5e-90 337.0 314 59.2
Gohir.A05G079500 Gossypium hirsutum HOM05D005386 ORTHO05D006981 4.5e-90 335.5 307 57.7
Gorai.009G084000 Gossypium raimondii HOM05D005386 ORTHO05D006981 5.8e-90 335.1 307 57.7
Gohir.D05G082400 Gossypium hirsutum HOM05D005386 ORTHO05D006981 7.6e-90 334.7 307 57.7
Eucgr.J00523 Eucalyptus grandis HOM05D005386 ORTHO05D006981 2.9e-89 332.8 303 59.7
arahy.Tifrunner.gnm1.ann1.E6G7P2 Arachis hypogaea HOM05D005386 ORTHO05D006981 6.5e-89 331.6 324 57.4
Manes.04G001400 Manihot esculenta HOM05D005386 ORTHO05D006981 6.5e-89 331.6 298 60.1
Atru.chr3.3168 Acer truncatum HOM05D005386 ORTHO05D006981 2.5e-88 329.7 312 57.1
Ciclev10028837m.g Citrus clementina HOM05D005386 ORTHO05D006981 2.1e-87 326.6 328 55.2
Dinv08924 Davidia involucrata HOM05D005386 ORTHO05D006981 6.7e-86 321.6 319 54.5
Lj3g0020097 Lotus japonicus HOM05D005386 ORTHO05D006981 8.7e-86 321.2 332 53.9
Ca_19443_v3 Cicer arietinum L. HOM05D005386 ORTHO05D006981 5.7e-85 318.5 324 56.2
THA.LOC104810925 Tarenaya hassleriana HOM05D005386 ORTHO05D006981 9.7e-85 317.8 307 56.0
TAR633G0448 Trochodendron aralioides HOM05D005386 ORTHO05D006981 1.3e-84 317.4 310 56.5
Carub.0006s2008 Capsella rubella HOM05D005386 ORTHO05D006981 2.8e-84 316.2 315 54.6
AT5G22340 Arabidopsis thaliana HOM05D005386 ORTHO05D006981 4.8e-84 315.5 313 55.0
Thhalv10014124m.g Eutrema salsugineum HOM05D005386 ORTHO05D006981 6.3e-84 315.1 316 54.4
Glyma.11G181300 Glycine max HOM05D005386 ORTHO05D006981 6.3e-84 315.1 305 54.8
Duzib168G0172 Durio zibethinus HOM05D005386 ORTHO05D006981 1.1e-83 314.3 319 54.5
Hma1.2p1_0319F.1_g123920 Hydrangea macrophylla HOM05D005386 ORTHO05D006981 2.4e-83 313.2 299 54.8
Lalb_Chr03g0028241 Lupinus albus HOM05D005386 ORTHO05D006981 2.4e-83 313.2 303 56.1
Sp6g22900 Schrenkiella parvula HOM05D005386 ORTHO05D006981 2.4e-83 313.2 317 55.2
TWI31G0673 Tripterygium wilfordii HOM05D005386 ORTHO05D006981 2.4e-83 313.2 316 55.4
Potri.009G160500 Populus trichocarpa HOM05D005386 ORTHO05D006981 1.2e-82 310.8 322 54.0
AL6G33360 Arabidopsis lyrata HOM05D005386 ORTHO05D006981 4.5e-82 308.9 323 53.9
CSS0011344 Camellia sinensis var. sinensis HOM05D005386 ORTHO05D006981 7.7e-82 308.1 295 55.9
CSS0028109 Camellia sinensis var. sinensis HOM05D005386 ORTHO05D006981 7.7e-82 308.1 295 55.9
BraA03t10382Z Brassica rapa HOM05D005386 ORTHO05D006981 5.0e-81 305.4 316 54.4
A03p10700 Brassica napus HOM05D005386 ORTHO05D006981 1.1e-80 304.3 309 55.0
FAN24G0713 Fragaria x ananassa HOM05D005386 ORTHO05D006981 1.1e-80 304.3 319 60.5
Lj1A257T31 Lonicera japonica HOM05D005386 ORTHO05D006981 2.5e-80 303.1 284 56.7
BolC3t13704H Brassica oleracea HOM05D005386 ORTHO05D006981 4.2e-80 302.4 308 54.9
Sed0024067 Sechium edule HOM05D005386 ORTHO05D006981 1.2e-79 300.8 320 51.6
CsaV3_1G015030 Cucumis sativus L. HOM05D005386 ORTHO05D006981 2.1e-79 300.1 282 54.6
C03p12310 Brassica napus HOM05D005386 ORTHO05D006981 4.6e-79 298.9 308 54.2
Psat7g187240 Pisum sativum HOM05D005386 ORTHO05D006981 4.6e-79 298.9 279 56.6
Nn7g37254 Nelumbo nucifera HOM05D005386 ORTHO05D006981 1.4e-78 297.4 310 53.5
ClCG01G011810 Citrullus lanatus HOM05D005386 ORTHO05D006981 3.9e-78 295.8 282 54.3
EL10Ac9g22916 Beta vulgaris HOM05D005386 ORTHO05D006981 8.8e-78 294.7 315 48.9
DCAR_022894 Daucus carota HOM05D005386 ORTHO05D006981 8.8e-78 294.7 325 51.1
TPR.G17201 Trifolium pratense HOM05D005386 ORTHO05D006981 1.1e-77 294.3 312 52.2
Duzib170G0830 Durio zibethinus HOM05D005386 ORTHO05D006981 1.5e-77 293.9 279 56.6
ATR0307G012 Amborella trichopoda HOM05D005386 ORTHO05D006981 9.7e-77 291.2 294 53.4
Lsat_1_v5_gn_2_3840 Lactuca sativa HOM05D005386 ORTHO05D006981 1.3e-76 290.8 280 55.7
Solyc11g068680.2 Solanum lycopersicum HOM05D005386 ORTHO05D006981 3.7e-76 289.3 313 51.4
Sopen11g027400 Solanum pennellii HOM05D005386 ORTHO05D006981 4.8e-76 288.9 313 51.1
arahy.Tifrunner.gnm1.ann1.PADK5G Arachis hypogaea HOM05D005386 ORTHO05D006981 1.4e-75 287.3 325 52.3
PSO339G6531 Papaver somniferum HOM05D005386 ORTHO05D006981 1.4e-75 287.3 325 51.4
ECA238G0234 Erigeron canadensis HOM05D005386 ORTHO05D006981 2.6e-74 283.1 331 49.2
HanXRQChr06g0183931 Helianthus annuus HOM05D005386 ORTHO05D006981 1.0e-73 281.2 275 56.0
Medtr4g052500 Medicago truncatula HOM05D005386 ORTHO05D006981 5.0e-73 278.9 293 53.2
PSO384G1357 Papaver somniferum HOM05D005386 ORTHO05D006981 6.5e-73 278.5 334 49.7
Sc06g0008690 Simmondsia chinensis HOM05D005386 ORTHO05D006981 6.5e-73 278.5 311 50.5
Cc01_g08820 Coffea canephora HOM05D005386 ORTHO05D006981 8.5e-73 278.1 297 51.9
Glyma.12G091900 Glycine max HOM05D005386 ORTHO05D006981 4.2e-72 275.8 305 51.5
Nitab4.5_0008177g0060 Nicotiana tabacum HOM05D005386 ORTHO05D006981 7.2e-72 275.0 311 49.5
Nitab4.5_0000731g0080 Nicotiana tabacum HOM05D005386 ORTHO05D006981 1.6e-71 273.9 310 49.0
PGR119G1266 Punica granatum HOM05D005386 ORTHO05D006981 6.1e-71 271.9 301 52.2
MSTRG.18771 Avicennia marina HOM05D005386 ORTHO05D006981 7.9e-71 271.6 325 48.3
Migut.D02364 Erythranthe guttata HOM05D005386 ORTHO05D006981 7.9e-71 271.6 329 47.4
Peaxi162Scf00224g00218 Petunia axillaris HOM05D005386 ORTHO05D006981 6.7e-70 268.5 294 50.3
BcaB01g04714 Brassica carinata HOM05D005386 ORTHO05D006981 8.8e-70 268.1 309 50.5
vmacro14339 Vaccinium macrocarpon HOM05D005386 ORTHO05D006981 5.7e-69 265.4 353 44.5
Rhsim01G0203700 Rhododendron simsii HOM05D005386 ORTHO05D006981 2.2e-68 263.5 291 50.5
MBI19_g34002_MAGBIO Magnolia biondii HOM05D005386 ORTHO05D006981 6.3e-68 261.9 307 47.9
Ah.01g001670 Amaranthus hybridus HOM05D005386 ORTHO05D006981 8.2e-68 261.5 308 46.4
FAN24G3375 Fragaria x ananassa HOM05D005386 ORTHO05D006981 8.2e-68 261.5 148 92.6
BcaC01g06587 Brassica carinata HOM05D005386 ORTHO05D006981 1.1e-67 261.2 318 48.7
SGA_v2.0_scaffold7G04001 Striga asiatica HOM05D005386 ORTHO05D006981 3.0e-62 243.0 327 45.3
Zm00001eb395560 Zea mays HOM05D005386 ORTHO05D006981 4.0e-62 242.7 293 46.4
MELO3C025590.2 Cucumis melo HOM05D005386 ORTHO05D006981 2.0e-61 240.4 256 50.8
SEGI_27763 Sequoiadendron giganteum HOM05D005386 ORTHO05D006981 2.6e-61 240.0 289 46.4
CDE08G0019 Ceratophyllum demersum HOM05D005386 ORTHO05D006981 2.2e-60 236.9 299 44.8
Aqoxy1G00008 Aquilegia oxysepala HOM05D005386 ORTHO05D006981 4.1e-59 232.6 322 43.8
Hund18776 Selenicereus undatus HOM05D005386 ORTHO05D006981 5.3e-59 232.3 420 34.5
Os03g0322600 Oryza sativa ssp. japonica HOM05D005386 ORTHO05D006981 2.0e-58 230.3 303 43.2
HPP92_001703 Vanilla planifolia HOM05D005386 ORTHO05D006981 2.7e-58 229.9 318 43.7
Actinidia37072 Actinidia chinensis HOM05D005386 ORTHO05D006981 3.5e-58 229.6 295 46.4
FAN15G3687 Fragaria x ananassa HOM05D005386 ORTHO05D006981 6.1e-55 218.8 148 79.1
AUR62017661 Chenopodium quinoa HOM05D005386 ORTHO05D006981 1.4e-54 217.6 278 44.2
AUR62015198 Chenopodium quinoa HOM05D005386 ORTHO05D006981 8.8e-54 214.9 287 44.6
unitig_736.g22394 Utricularia gibba HOM05D005386 ORTHO05D006981 3.7e-52 209.5 280 44.6
Mapoly0094s0013 Marchantia polymorpha HOM05D005386 ORTHO05D006981 2.0e-50 203.8 301 40.2
Phvul.011G096200 Phaseolus vulgaris HOM05D005386 ORTHO05D006981 6.5e-49 198.7 190 55.3
Zm00001eb015340 Zea mays HOM05D005386 ORTHO05D006981 4.2e-48 196.1 214 50.0
Hma1.2p1_0319F.1_g123910 Hydrangea macrophylla HOM05D005386 ORTHO05D006981 7.2e-48 195.3 165 61.2
Oeu014472.1 Olea europaea HOM05D005386 ORTHO05D006981 2.7e-47 193.4 170 60.6
Cpa.g.sc195.24 Carica papaya HOM05D005386 ORTHO05D006981 1.8e-46 190.7 166 60.2
Zm00001eb285540 Zea mays HOM05D005386 ORTHO05D006981 2.6e-45 186.8 317 40.4
Aa31LG1G13200 Aethionema arabicum HOM05D005386 ORTHO05D006981 5.4e-43 179.1 201 49.3
BcaC01g06590 Brassica carinata HOM05D005386 ORTHO05D006981 2.0e-42 177.2 238 45.4
FvH4_2g10370 Fragaria vesca HOM05D005386 ORTHO05D006981 9.5e-40 168.3 148 64.2
AagrBONN_evm.TU.Sc2ySwM_228.4159 Anthoceros agrestis HOM05D005386 ORTHO05D006981 1.4e-38 164.5 279 35.8
SalBow6G0611 Salvia bowleyana HOM05D005386 ORTHO05D006981 5.2e-38 162.5 297 38.0
TAR633G2192 Trochodendron aralioides HOM05D005386 ORTHO05D006981 9.8e-37 158.3 139 56.8
AUR62014970 Chenopodium quinoa HOM05D005386 ORTHO05D006981 4.9e-36 156.0 288 38.2
VMungo1127G0965 Vigna mungo HOM05D005386 ORTHO05D006981 2.0e-34 150.6 146 53.4
Thecc.09G278700 Theobroma cacao HOM05D005386 ORTHO05D006981 7.3e-32 142.1 221 44.3
SMO338G0026 Selaginella moellendorffii HOM05D005386 ORTHO05D006981 1.6e-31 141.0 225 40.0
SMO140G0002 Selaginella moellendorffii HOM05D005386 ORTHO05D006981 4.7e-31 139.4 282 33.3
Aa31LG1G13190 Aethionema arabicum HOM05D005386 ORTHO05D006981 8.0e-31 138.7 88 76.1
Ciclev10029637m.g Citrus clementina HOM05D005386 ORTHO05D006981 8.0e-31 138.7 86 73.3
Pp3c20_23100 Physcomitrium patens HOM05D005386 ORTHO05D006981 1.8e-30 137.5 203 39.9
AUR62043809 Chenopodium quinoa HOM05D004271 ORTHO05D006011 2.9e-28 130.2 193 41.5
VMungo1127G1152 Vigna mungo HOM05D005386 ORTHO05D006981 1.9e-27 127.5 85 72.9
Ciclev10029895m.g Citrus clementina HOM05D005386 ORTHO05D006981 3.5e-26 123.2 86 66.3
arahy.Tifrunner.gnm1.ann1.M18R9V Arachis hypogaea HOM05D005386 ORTHO05D006981 6.6e-25 119.0 115 56.5
CARHR191200 Cardamine hirsuta HOM05D005386 ORTHO05D006981 6.2e-23 112.5 148 43.9
arahy.Tifrunner.gnm1.ann1.J76LRM Arachis hypogaea HOM05D005386 ORTHO05D006981 1.9e-19 100.9 81 66.7
arahy.Tifrunner.gnm1.ann1.TQJ2IB Arachis hypogaea HOM05D005386 ORTHO05D006981 1.3e-17 94.7 82 63.4
arahy.Tifrunner.gnm1.ann1.XDN0DP Arachis hypogaea HOM05D005386 ORTHO05D006981 3.1e-14 83.6 87 51.7
FvH4_2g10341 Fragaria vesca HOM05D005386 ORTHO05D006981 5.2e-14 82.8 72 69.4
arahy.Tifrunner.gnm1.ann1.CXSI0G Arachis hypogaea HOM05D000290 ORTHO05D002418 2.0e-13 80.9 53 69.8
FvH4_2g10360 Fragaria vesca HOM05D005386 ORTHO05D006981 6.4e-12 75.9 46 84.8
arahy.Tifrunner.gnm1.ann1.QCQ2D8 Arachis hypogaea HOM05D005386 ORTHO05D006981 9.2e-11 72.0 49 67.3
Cpa.g.sc195.25 Carica papaya HOM05D005386 ORTHO05D006981 2.1e-10 70.9 51 68.6
arahy.Tifrunner.gnm1.ann1.9EB2HI Arachis hypogaea HOM05D005386 ORTHO05D006981 1.7e-09 67.8 61 60.7
arahy.Tifrunner.gnm1.ann1.M13D0Y Arachis hypogaea HOM05D005386 ORTHO05D006981 2.3e-09 67.4 42 78.6
arahy.Tifrunner.gnm1.ann1.XD28JK Arachis hypogaea HOM05D005386 ORTHO05D006981 2.3e-09 67.4 61 60.7
MD09G1069600 Malus domestica HOM05D005386 ORTHO05D006981 2.3e-09 67.4 78 56.4
AagrBONN_evm.TU.Sc2ySwM_228.3020 Anthoceros agrestis HOM05D006699 ORTHO05D008399 6.6e-09 65.9 177 29.9
CBR_g22416 Chara braunii HOM05D005386 ORTHO05D006981 3.3e-08 63.5 86 38.4
arahy.Tifrunner.gnm1.ann1.V0D9HX Arachis hypogaea HOM05D005386 ORTHO05D084459 2.8e-07 60.5 63 54.0
Hma1.2p1_0319F.1_g123930 Hydrangea macrophylla HOM05D005386 ORTHO05D006981 4.7e-07 59.7 73 41.1
Cpa.g.sc195.26 Carica papaya HOM05D005386 ORTHO05D006981 1.4e-06 58.2 73 45.2


User provided reference genes

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